View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12856_high_1 (Length: 394)

Name: NF12856_high_1
Description: NF12856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12856_high_1
NF12856_high_1
[»] chr8 (5 HSPs)
chr8 (27-224)||(10680026-10680223)
chr8 (190-384)||(10680263-10680467)
chr8 (328-380)||(10681926-10681978)
chr8 (336-384)||(17963460-17963508)
chr8 (326-371)||(4390754-4390799)
[»] chr1 (9 HSPs)
chr1 (310-384)||(46683595-46683670)
chr1 (325-384)||(2228097-2228156)
chr1 (325-384)||(46683379-46683438)
chr1 (325-384)||(47477311-47477370)
chr1 (337-373)||(680662-680698)
chr1 (325-381)||(5153319-5153375)
chr1 (325-384)||(47478620-47478679)
chr1 (337-375)||(49617161-49617199)
chr1 (325-375)||(51745846-51745896)
[»] chr5 (6 HSPs)
chr5 (325-383)||(34002964-34003022)
chr5 (325-375)||(13828928-13828978)
chr5 (336-383)||(37987514-37987561)
chr5 (337-372)||(13614818-13614853)
chr5 (337-375)||(13827617-13827655)
chr5 (325-375)||(19685674-19685724)
[»] chr4 (13 HSPs)
chr4 (325-384)||(4349932-4349991)
chr4 (325-381)||(3334690-3334746)
chr4 (325-384)||(55515551-55515611)
chr4 (337-384)||(3087944-3087991)
chr4 (325-383)||(3086437-3086495)
chr4 (325-375)||(10224431-10224481)
chr4 (325-375)||(23356630-23356680)
chr4 (325-374)||(55514755-55514804)
chr4 (339-375)||(33953071-33953107)
chr4 (325-375)||(19137819-19137869)
chr4 (325-375)||(23357942-23357992)
chr4 (339-384)||(25728727-25728772)
chr4 (326-374)||(10231220-10231268)
[»] chr2 (6 HSPs)
chr2 (325-384)||(14146956-14147015)
chr2 (325-382)||(14145593-14145650)
chr2 (337-373)||(34880445-34880481)
chr2 (325-371)||(36626423-36626469)
chr2 (325-370)||(33373168-33373213)
chr2 (325-370)||(34506375-34506420)
[»] chr7 (4 HSPs)
chr7 (328-381)||(43962768-43962821)
chr7 (339-384)||(18655135-18655180)
chr7 (325-372)||(46484321-46484368)
chr7 (339-375)||(46419362-46419398)
[»] scaffold0586 (2 HSPs)
scaffold0586 (326-375)||(7638-7687)
scaffold0586 (326-375)||(8684-8733)
[»] scaffold1234 (1 HSPs)
scaffold1234 (325-375)||(1801-1851)
[»] chr3 (7 HSPs)
chr3 (325-374)||(24742776-24742825)
chr3 (336-375)||(23211332-23211371)
chr3 (325-370)||(13102402-13102447)
chr3 (339-384)||(33854406-33854451)
chr3 (337-373)||(39195609-39195645)
chr3 (337-373)||(39197830-39197866)
chr3 (337-373)||(51970057-51970093)
[»] scaffold0012 (1 HSPs)
scaffold0012 (337-373)||(191199-191235)


Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 27 - 224
Target Start/End: Original strand, 10680026 - 10680223
Alignment:
Q  27 aaaaaagtgacatcgtaatcatcatcctaacacacacacgcaaagcaggaagaaaataaagataactgagaaaagactaaagataattgaaagaattatc 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  10680026 aaaaaagtgacatcgtaatcatcatcctaacacacacacgcaaagcaggaagaaaataaagataactgggaaaagactagagataattgaaagaattatc 10680125  T
Q  127 tgaagagattaaacgacaaagataaaagtatttctcatttatttaagagaataaaggaaaaaactttgtcccccgctatggtgcggtacaaaagaagg 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10680126 tgaagagattaaacgacaaagataaaagtatttctcatttatttaagagaataaaggaaaaaactttgtcccccgctatggtgcggtacaaaagaagg 10680223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 190 - 384
Target Start/End: Original strand, 10680263 - 10680467
Alignment:
Q  190 ctttgtcccccgctatggtgcggtacaaaagaaggacatattttcaatatttgtactgctttgtgtttcatatttaaacaaatcaaacataccaaaagag 289  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10680263 ctttgtcccccgctatggtgcggtacaaaagaaggacatatttccaatatttgtactgctttgtgtttcatatttaaacaaatcaaacacaccaaaagag 10680362  T
Q  290 gaattaaagaannnnnnnnctgccctagtttttgcc----------aaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggt 379  Q
    |||||||||||        ||| |||||||||||||          |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10680363 gaattaaagaattttttttctgtcctagtttttgccaaaaaaacataaaaatacctcactttttcgaaaaattgcataaatgttctactttttcaggggt 10680462  T
Q  380 ctctg 384  Q
    |||||    
T  10680463 ctctg 10680467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 380
Target Start/End: Complemental strand, 10681978 - 10681926
Alignment:
Q  328 aaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtc 380  Q
    ||||||| |||||||||||||||||||| |||||| |||||||||||||||||    
T  10681978 aaataccccactttttcgaaaaattgcagaaatgccctactttttcaggggtc 10681926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 384
Target Start/End: Complemental strand, 17963508 - 17963460
Alignment:
Q  336 cactttttcgaaaaattgcataaatgctctactttttcaggggtctctg 384  Q
    |||||||||||||||||||| |||||| ||||||||||||  |||||||    
T  17963508 cactttttcgaaaaattgcacaaatgccctactttttcagatgtctctg 17963460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 371
Target Start/End: Original strand, 4390754 - 4390799
Alignment:
Q  326 aaaaatacctcactttttcgaaaaattgcataaatgctctactttt 371  Q
    |||||| |||||||||| | ||||||||||||||||| ||||||||    
T  4390754 aaaaatgcctcacttttgcaaaaaattgcataaatgccctactttt 4390799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 46683670 - 46683595
Alignment:
Q  310 tgccctagtttttgccaaaaa-tacctcactttttcgaaaaattgcataaatgctctactttttcaggggtctctg 384  Q
    |||||||||||||| |||||| |||| |||||||||||||||||||| |||||| |||||||||||||||||||||    
T  46683670 tgccctagtttttgtcaaaaaataccccactttttcgaaaaattgcagaaatgccctactttttcaggggtctctg 46683595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 325 - 384
Target Start/End: Complemental strand, 2228156 - 2228097
Alignment:
Q  325 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtctctg 384  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||    
T  2228156 caaaaatacctcactttttcgaaaaattgcagaaatgccctactttttaaggggtctctg 2228097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 325 - 384
Target Start/End: Original strand, 46683379 - 46683438
Alignment:
Q  325 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtctctg 384  Q
    |||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||    
T  46683379 caaaaataccccactttttcgaaaaattgcagaaatgccctactttttcaggggtctctg 46683438  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 325 - 384
Target Start/End: Original strand, 47477311 - 47477370
Alignment:
Q  325 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtctctg 384  Q
    |||||||||| |||||||||||||||||||  |||||| |||||||||||||||||||||    
T  47477311 caaaaataccccactttttcgaaaaattgctgaaatgccctactttttcaggggtctctg 47477370  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 373
Target Start/End: Original strand, 680662 - 680698
Alignment:
Q  337 actttttcgaaaaattgcataaatgctctactttttc 373  Q
    |||||||||||||||||||||||||| ||||||||||    
T  680662 actttttcgaaaaattgcataaatgccctactttttc 680698  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 381
Target Start/End: Complemental strand, 5153375 - 5153319
Alignment:
Q  325 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtct 381  Q
    ||||||||||| ||||||| ||||||||||||||||   ||||||||||||| ||||    
T  5153375 caaaaataccttacttttttgaaaaattgcataaatatcctactttttcaggtgtct 5153319  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 384
Target Start/End: Complemental strand, 47478679 - 47478620
Alignment:
Q  325 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtctctg 384  Q
    |||||||| | | |||||||||||||||||| |||||  ||||||||| |||||||||||    
T  47478679 caaaaatatcccgctttttcgaaaaattgcagaaatgtcctacttttttaggggtctctg 47478620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 337 - 375
Target Start/End: Original strand, 49617161 - 49617199
Alignment:
Q  337 actttttcgaaaaattgcataaatgctctactttttcag 375  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  49617161 actttttcgaaaaattgcacaaatgccctactttttcag 49617199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 325 - 375
Target Start/End: Original strand, 51745846 - 51745896
Alignment:
Q  325 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcag 375  Q
    ||||||| || |||||||||||||||||||  |||||| ||||||||||||    
T  51745846 caaaaatgccccactttttcgaaaaattgcgcaaatgccctactttttcag 51745896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 34002964 - 34003022
Alignment:
Q  325 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtctct 383  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  34002964 caaaaatacctcactttttcgaaaaattgcagaaatgccctactttttcaggggtctct 34003022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 325 - 375
Target Start/End: Complemental strand, 13828978 - 13828928
Alignment:
Q  325 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcag 375  Q
    ||||||| || |||||||||||||||||||| |||||||||||||||||||    
T  13828978 caaaaatgccccactttttcgaaaaattgcaaaaatgctctactttttcag 13828928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 383
Target Start/End: Original strand, 37987514 - 37987561
Alignment:
Q  336 cactttttcgaaaaattgcataaatgctctactttttcaggggtctct 383  Q
    |||||||||||||||||||| |||||| ||||||||||||| ||||||    
T  37987514 cactttttcgaaaaattgcagaaatgccctactttttcaggagtctct 37987561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 372
Target Start/End: Original strand, 13614818 - 13614853
Alignment:
Q  337 actttttcgaaaaattgcataaatgctctacttttt 372  Q
    |||||||||||||||||||||||||| |||||||||    
T  13614818 actttttcgaaaaattgcataaatgccctacttttt 13614853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 337 - 375
Target Start/End: Original strand, 13827617 - 13827655
Alignment:
Q  337 actttttcgaaaaattgcataaatgctctactttttcag 375  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  13827617 actttttcgaaaaattgcaaaaatgccctactttttcag 13827655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 325 - 375
Target Start/End: Complemental strand, 19685724 - 19685674
Alignment:
Q  325 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcag 375  Q
    ||||||| || ||||||| | ||||||||||||||||| ||||||||||||    
T  19685724 caaaaatgccccacttttgcaaaaaattgcataaatgccctactttttcag 19685674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 325 - 384
Target Start/End: Original strand, 4349932 - 4349991
Alignment:
Q  325 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtctctg 384  Q
    |||||||| |||||||||||||||||||||| |||||  |||||||||||||||||||||    
T  4349932 caaaaatatctcactttttcgaaaaattgcagaaatgtcctactttttcaggggtctctg 4349991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 325 - 381
Target Start/End: Complemental strand, 3334746 - 3334690
Alignment:
Q  325 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtct 381  Q
    |||||||||| |||||||||||||||||||| |||||| ||||||||||| ||||||    
T  3334746 caaaaataccccactttttcgaaaaattgcagaaatgccctactttttcatgggtct 3334690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 325 - 384
Target Start/End: Complemental strand, 55515611 - 55515551
Alignment:
Q  325 caaaaatacctcactttttc-gaaaaattgcataaatgctctactttttcaggggtctctg 384  Q
    |||||||||| ||||||||  ||||||||||| |||||| |||||||||||||||||||||    
T  55515611 caaaaataccccactttttttgaaaaattgcaaaaatgccctactttttcaggggtctctg 55515551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 384
Target Start/End: Complemental strand, 3087991 - 3087944
Alignment:
Q  337 actttttcgaaaaattgcataaatgctctactttttcaggggtctctg 384  Q
    ||||||||||||||||||| ||||||  ||||||||||||||||||||    
T  3087991 actttttcgaaaaattgcagaaatgccatactttttcaggggtctctg 3087944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 3086437 - 3086495
Alignment:
Q  325 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtctct 383  Q
    ||||||||||  | ||||||||||||||||| |||||| ||| ||||||||||||||||    
T  3086437 caaaaataccctattttttcgaaaaattgcagaaatgccctattttttcaggggtctct 3086495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 325 - 375
Target Start/End: Original strand, 10224431 - 10224481
Alignment:
Q  325 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcag 375  Q
    ||||||| || ||||||||||||||||||| ||||||| ||||||||||||    
T  10224431 caaaaatgccccactttttcgaaaaattgcgtaaatgccctactttttcag 10224481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 325 - 375
Target Start/End: Original strand, 23356630 - 23356680
Alignment:
Q  325 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcag 375  Q
    ||||||| || |||||||||||||||||||| |||||| ||||||||||||    
T  23356630 caaaaatgccccactttttcgaaaaattgcaaaaatgccctactttttcag 23356680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 374
Target Start/End: Original strand, 55514755 - 55514804
Alignment:
Q  325 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttca 374  Q
    |||||||||| |||||||||||||||||||  |||||| |||||||||||    
T  55514755 caaaaataccccactttttcgaaaaattgctgaaatgccctactttttca 55514804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 375
Target Start/End: Complemental strand, 33953107 - 33953071
Alignment:
Q  339 tttttcgaaaaattgcataaatgctctactttttcag 375  Q
    |||||||||||||||||||||||| ||||||||||||    
T  33953107 tttttcgaaaaattgcataaatgccctactttttcag 33953071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 325 - 375
Target Start/End: Complemental strand, 19137869 - 19137819
Alignment:
Q  325 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcag 375  Q
    ||||||| || |||||||||||||||||||  |||||| ||||||||||||    
T  19137869 caaaaatgccccactttttcgaaaaattgcgcaaatgccctactttttcag 19137819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 325 - 375
Target Start/End: Complemental strand, 23357992 - 23357942
Alignment:
Q  325 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcag 375  Q
    ||||||| || || ||||||||||||||||| |||||| ||||||||||||    
T  23357992 caaaaatgccccattttttcgaaaaattgcaaaaatgccctactttttcag 23357942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 384
Target Start/End: Original strand, 25728727 - 25728772
Alignment:
Q  339 tttttcgaaaaattgcataaatgctctactttttcaggggtctctg 384  Q
    ||||||||||||||||| ||||   |||||||||||||||||||||    
T  25728727 tttttcgaaaaattgcagaaatatcctactttttcaggggtctctg 25728772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 374
Target Start/End: Complemental strand, 10231268 - 10231220
Alignment:
Q  326 aaaaatacctcactttttcgaaaaattgcataaatgctctactttttca 374  Q
    |||||| || |||||||||||||||||||  |||||| |||||||||||    
T  10231268 aaaaatgccccactttttcgaaaaattgcgcaaatgccctactttttca 10231220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 325 - 384
Target Start/End: Complemental strand, 14147015 - 14146956
Alignment:
Q  325 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtctctg 384  Q
    |||||||||| |||||||||||||||| ||| |||||| |||||||||||||||||||||    
T  14147015 caaaaataccccactttttcgaaaaatggcagaaatgccctactttttcaggggtctctg 14146956  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 325 - 382
Target Start/End: Original strand, 14145593 - 14145650
Alignment:
Q  325 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtctc 382  Q
    |||||||||| |||||||||||||||||||| |||||  |||||||||||||||||||    
T  14145593 caaaaataccccactttttcgaaaaattgcagaaatggcctactttttcaggggtctc 14145650  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 373
Target Start/End: Complemental strand, 34880481 - 34880445
Alignment:
Q  337 actttttcgaaaaattgcataaatgctctactttttc 373  Q
    |||||||||||||||||||||||||| ||||||||||    
T  34880481 actttttcgaaaaattgcataaatgccctactttttc 34880445  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 325 - 371
Target Start/End: Original strand, 36626423 - 36626469
Alignment:
Q  325 caaaaatacctcactttttcgaaaaattgcataaatgctctactttt 371  Q
    ||||||| |||||||||| | ||||||||||||||||| ||||||||    
T  36626423 caaaaatgcctcacttttgcaaaaaattgcataaatgccctactttt 36626469  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 370
Target Start/End: Complemental strand, 33373213 - 33373168
Alignment:
Q  325 caaaaatacctcactttttcgaaaaattgcataaatgctctacttt 370  Q
    ||||||| || ||||||||||||||||||| ||||||| |||||||    
T  33373213 caaaaatgccccactttttcgaaaaattgcgtaaatgccctacttt 33373168  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 370
Target Start/End: Original strand, 34506375 - 34506420
Alignment:
Q  325 caaaaatacctcactttttcgaaaaattgcataaatgctctacttt 370  Q
    ||||||||||| ||||||||||||||||||  |||||| |||||||    
T  34506375 caaaaataccttactttttcgaaaaattgcccaaatgccctacttt 34506420  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 328 - 381
Target Start/End: Original strand, 43962768 - 43962821
Alignment:
Q  328 aaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtct 381  Q
    ||||||| |||||||||||||||||||| ||||||| |||||||||||||||||    
T  43962768 aaataccccactttttcgaaaaattgcagaaatgctttactttttcaggggtct 43962821  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 339 - 384
Target Start/End: Original strand, 18655135 - 18655180
Alignment:
Q  339 tttttcgaaaaattgcataaatgctctactttttcaggggtctctg 384  Q
    |||||||||||||||||||||||||||||||||||||  |||||||    
T  18655135 tttttcgaaaaattgcataaatgctctactttttcagaagtctctg 18655180  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 372
Target Start/End: Original strand, 46484321 - 46484368
Alignment:
Q  325 caaaaatacctcactttttcgaaaaattgcataaatgctctacttttt 372  Q
    ||||||||||||| |||| | ||||||||||||||||| |||||||||    
T  46484321 caaaaatacctcatttttgcaaaaaattgcataaatgccctacttttt 46484368  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 339 - 375
Target Start/End: Original strand, 46419362 - 46419398
Alignment:
Q  339 tttttcgaaaaattgcataaatgctctactttttcag 375  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  46419362 tttttcaaaaaattgcataaatgccctactttttcag 46419398  T

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Target: scaffold0586 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 326 - 375
Target Start/End: Original strand, 7638 - 7687
Alignment:
Q  326 aaaaatacctcactttttcgaaaaattgcataaatgctctactttttcag 375  Q
    |||||| | |||||||||||||||||||||||||||| ||||||||||||    
T  7638 aaaaatgcttcactttttcgaaaaattgcataaatgccctactttttcag 7687  T

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Target: scaffold0586; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 326 - 375
Target Start/End: Complemental strand, 8733 - 8684
Alignment:
Q  326 aaaaatacctcactttttcgaaaaattgcataaatgctctactttttcag 375  Q
    |||||| ||||||||||||||||||||||| |||||| ||||||||||||    
T  8733 aaaaatgcctcactttttcgaaaaattgcacaaatgccctactttttcag 8684  T

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Target: scaffold1234 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1234
Description:

Target: scaffold1234; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 325 - 375
Target Start/End: Original strand, 1801 - 1851
Alignment:
Q  325 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcag 375  Q
    ||||||| || |||||||||||||||||||| |||||| ||||||||||||    
T  1801 caaaaatgccccactttttcgaaaaattgcaaaaatgccctactttttcag 1851  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 374
Target Start/End: Original strand, 24742776 - 24742825
Alignment:
Q  325 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttca 374  Q
    |||||||||| ||||||||||||||||| || |||||| |||||||||||    
T  24742776 caaaaataccccactttttcgaaaaattacacaaatgccctactttttca 24742825  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 336 - 375
Target Start/End: Original strand, 23211332 - 23211371
Alignment:
Q  336 cactttttcgaaaaattgcataaatgctctactttttcag 375  Q
    |||||||||||||||||||| |||||| ||||||||||||    
T  23211332 cactttttcgaaaaattgcaaaaatgccctactttttcag 23211371  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 370
Target Start/End: Original strand, 13102402 - 13102447
Alignment:
Q  325 caaaaatacctcactttttcgaaaaattgcataaatgctctacttt 370  Q
    ||||||| |||||||||||| |||||||||| |||||| |||||||    
T  13102402 caaaaatgcctcactttttcaaaaaattgcacaaatgccctacttt 13102447  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 384
Target Start/End: Original strand, 33854406 - 33854451
Alignment:
Q  339 tttttcgaaaaattgcataaatgctctactttttcaggggtctctg 384  Q
    |||||||||||||||||||||| | ||||||||||||  |||||||    
T  33854406 tttttcgaaaaattgcataaataccctactttttcagaagtctctg 33854451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 373
Target Start/End: Original strand, 39195609 - 39195645
Alignment:
Q  337 actttttcgaaaaattgcataaatgctctactttttc 373  Q
    |||||||||||||||||||||||| | ||||||||||    
T  39195609 actttttcgaaaaattgcataaataccctactttttc 39195645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 373
Target Start/End: Complemental strand, 39197866 - 39197830
Alignment:
Q  337 actttttcgaaaaattgcataaatgctctactttttc 373  Q
    |||||||||||||||||||||||| | ||||||||||    
T  39197866 actttttcgaaaaattgcataaataccctactttttc 39197830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 373
Target Start/End: Complemental strand, 51970093 - 51970057
Alignment:
Q  337 actttttcgaaaaattgcataaatgctctactttttc 373  Q
    |||||||||||||||||||||||| | ||||||||||    
T  51970093 actttttcgaaaaattgcataaataccctactttttc 51970057  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 373
Target Start/End: Original strand, 191199 - 191235
Alignment:
Q  337 actttttcgaaaaattgcataaatgctctactttttc 373  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  191199 acttttttgaaaaattgcataaatgccctactttttc 191235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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