View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12856_low_2 (Length: 340)
Name: NF12856_low_2
Description: NF12856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12856_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 16 - 333
Target Start/End: Complemental strand, 1855729 - 1855412
Alignment:
| Q |
16 |
cagtttcttgatatgttctacagaaaaattataggatccttgttttgcaataaaggaatagctacaagaattttccatagatagtgtagaaggtgagaat |
115 |
Q |
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| T |
1855729 |
cagtttcttaatatgttctacagaaaaattataggatccttgttttgcaataaaggaatagctacaagaattttccatagatagtgtagaaggtgagaat |
1855630 |
T |
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| Q |
116 |
ttaaatgcttctatggtgatatttttcataagtggaggaatatcaacttcacaacaacctaaacctgtgcactttccagtgttatttccaattaccattt |
215 |
Q |
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| T |
1855629 |
ttaaatgcttgtatggtgatatttttcataagtggaggaatatcaacttcacaacaacctaaacctgtgcactttccagtgttatttccaattaccattt |
1855530 |
T |
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| Q |
216 |
tagtatcaaaatcataacatcttgttaagcatcctgtagaataagtggcacccttgaaattactgttgagatatccgtaactgtcacaaccaactgttat |
315 |
Q |
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| T |
1855529 |
tagtatcaaaatcataacatcttgttaagcatcctgtagaataagtggcacccttgaaattactgttgagatatccgaaactgtcacaaccaactgttat |
1855430 |
T |
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| Q |
316 |
gaatttgttgtctgtgct |
333 |
Q |
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| T |
1855429 |
gaatttgttgtctgtgct |
1855412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 26 - 324
Target Start/End: Original strand, 1817472 - 1817770
Alignment:
| Q |
26 |
atatgttctacagaaaaattataggatccttgttttgcaataaaggaatagctacaagaattttccatagatagtgtagaaggtgagaatttaaatgctt |
125 |
Q |
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| T |
1817472 |
atatggtctacagaaaatttataggatccttgttttgcaataaaggaatagctacaagaattttccttagatagggtagaagttgggaatttaaatgctt |
1817571 |
T |
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| Q |
126 |
ctatggtgatatttttcataagtggaggaatatcaacttcacaacaacctaaacctgtgcactttccagtgttatttccaattaccattttagtatcaaa |
225 |
Q |
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| T |
1817572 |
caattgtgatatttttcatactagaaggaatatccacttggcaacaccctaaacctgtgcattttccagtgttattcccaattactattttaggtttaaa |
1817671 |
T |
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| Q |
226 |
atcataacatcttgttaagcatcctgtagaataagtggcacccttgaaattactgttgagatatccgtaactgtcacaaccaactgttatgaatttgtt |
324 |
Q |
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| T |
1817672 |
atcataacatcttgttaagcaccctgttgaataagtgccacctgtgaaattactgttgagatatccgtaactgtcgcaaccaacggttatgaatttgtt |
1817770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 228 - 333
Target Start/End: Original strand, 9220511 - 9220616
Alignment:
| Q |
228 |
cataacatcttgttaagcatcctgtagaataagtggcacccttgaaattactgttgagatatccgtaactgtcacaaccaactgttatgaatttgttgtc |
327 |
Q |
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| T |
9220511 |
cataacatcttgttaagcaaccggttgaatatgtttcttcgttgtaaatactgttgagataaccgtaactgtcacaaccaaccgttatgaacttgttttc |
9220610 |
T |
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| Q |
328 |
tgtgct |
333 |
Q |
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||||| |
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| T |
9220611 |
agtgct |
9220616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 9158110 - 9158157
Alignment:
| Q |
277 |
actgttgagatatccgtaactgtcacaaccaactgttatgaatttgtt |
324 |
Q |
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| T |
9158110 |
actgttgagataaccgtaactgtcacaaccaaccgttacgaacttgtt |
9158157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 55 - 333
Target Start/End: Complemental strand, 37567171 - 37566880
Alignment:
| Q |
55 |
ttgttttgcaataaaggaatagctacaagaattttccatagatagtgtagaaggtgagaatttaaatgcttctatggtgatatttttcataagtggagga |
154 |
Q |
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| T |
37567171 |
ttgttttgcaataaaggaatagctacaagaattttccatagacagtgtagaagttgggaatttaaatgtttcaattgtgatatttttcatactagaagga |
37567072 |
T |
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| Q |
155 |
atatcaacttcacaacaacctaaacct------gtgcactttccagtgttatttccaattaccattttagtatcaaaatcataacatcttgttaa----- |
243 |
Q |
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| T |
37567071 |
atatccacttggcaacaccctaaacctaggcctgtgcattttccagtgttattcccagttaccattttaggatcaaaatcataacatcttgttaactgtt |
37566972 |
T |
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| Q |
244 |
--gcatcctgtagaataagtggcacccttgaaattactgttgagatatccgtaactgtcacaaccaactgttatgaatttgttgtctgtgct |
333 |
Q |
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| T |
37566971 |
aagcatcctgtagaataagtggcacccttgaaattactgttgagatatccgtaactgtcgcaaccaacggttatgaatttgttttccgtgct |
37566880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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