View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12856_low_3 (Length: 263)
Name: NF12856_low_3
Description: NF12856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12856_low_3 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 27 - 263
Target Start/End: Original strand, 10680026 - 10680262
Alignment:
| Q |
27 |
aaaaaagtgacatcgtaatcatcatcctaacacacacacgcaaagcaggaagaaaataaagataactgagaaaagactaaagataattgaaagaattatc |
126 |
Q |
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| T |
10680026 |
aaaaaagtgacatcgtaatcatcatcctaacacacacacgcaaagcaggaagaaaataaagataactgggaaaagactagagataattgaaagaattatc |
10680125 |
T |
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| Q |
127 |
tgaagagattaaacgacaaagataaaagtatttctcatttatttaagagaataaaggaaaaaactttgtcccccgctatggtgcggtacaaaagaagggt |
226 |
Q |
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| T |
10680126 |
tgaagagattaaacgacaaagataaaagtatttctcatttatttaagagaataaaggaaaaaactttgtcccccgctatggtgcggtacaaaagaagggt |
10680225 |
T |
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| Q |
227 |
ggttgtccagtccattgcttcttcaaaatgttgactg |
263 |
Q |
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| T |
10680226 |
ggttgtccagtccattgcttcttcaaaatgttgactg |
10680262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 10680263 - 10680297
Alignment:
| Q |
190 |
ctttgtcccccgctatggtgcggtacaaaagaagg |
224 |
Q |
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| T |
10680263 |
ctttgtcccccgctatggtgcggtacaaaagaagg |
10680297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 249
Target Start/End: Original strand, 4268974 - 4269037
Alignment:
| Q |
186 |
aaaactttgtcccccgctatggtgcggtacaaaagaagggtggttgtccagtccattgcttctt |
249 |
Q |
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| T |
4268974 |
aaaactttgtccactgctttggtgcggtacaataaaacggtggttgtccagtccctcgcttctt |
4269037 |
T |
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