View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12856_low_4 (Length: 251)
Name: NF12856_low_4
Description: NF12856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12856_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 38249633 - 38249860
Alignment:
| Q |
9 |
agcatagggattgaaggagaaagatcctaatgttagagggtttatggttatgaacggtgatcttttaatttttgctacagaagaaaaggtttacagttgc |
108 |
Q |
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| T |
38249633 |
agcattgggattgaaggagaaagatcctaatgttagagggtttatggttatgaacggtgatcttttaatttttgctacagaagaaaaggtttacagttgc |
38249732 |
T |
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| Q |
109 |
ggtttggactgtgaacgatatatgatggtggaggaaatttgccaacatagttgtggtttttaccctcgctttatctcctactcagatactcttcgtctgt |
208 |
Q |
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| T |
38249733 |
ggtttggactgtgaacgatatatgatggtggaggaaatttgccaacatagttgtggtttttaccctcgctttatctcctactcagatactcttcgtttgt |
38249832 |
T |
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| Q |
209 |
gtcggactaatgctgaagttatgccttg |
236 |
Q |
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| T |
38249833 |
gtcggactaatgctgaagttatgccttg |
38249860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 146
Target Start/End: Complemental strand, 20655841 - 20655704
Alignment:
| Q |
9 |
agcatagggattgaaggagaaagatcctaatgttagagggtttatggttatgaacggtgatcttttaatttttgctacagaagaaaaggtttacagttgc |
108 |
Q |
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| T |
20655841 |
agcattgggattgaatgagacaaatcctaatgttagagggtttatggttatgaatggtaatctattagtttttcctacgaaagagaaactttacggttat |
20655742 |
T |
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| Q |
109 |
ggtttggactgtgaacgatatatgatggtggaggaaat |
146 |
Q |
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| T |
20655741 |
ggtttggagggtgaaagttatatgatggtcgaagaaat |
20655704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 20657286 - 20657354
Alignment:
| Q |
17 |
gattgaaggagaaagatcctaatgttagagggtttatggttatgaacggtgatcttttaatttttgcta |
85 |
Q |
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| T |
20657286 |
gattgaatgagacaaatcctaatgttagagggtttatgtttatgaatggtaatctcttagtttttgcta |
20657354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 155
Target Start/End: Complemental strand, 12035742 - 12035623
Alignment:
| Q |
36 |
taatgttagagggtttatggttatgaacggtgatcttttaatttttgctacagaagaaaaggtttacagttgcggtttggactgtgaacgatatatgatg |
135 |
Q |
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| T |
12035742 |
taatgttagagggtttatggttatgaatcgtaatctcttcgtttttgctacggaagagaaactttacagctatggtttggagggtgaaagttatatgatg |
12035643 |
T |
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| Q |
136 |
gtggaggaaatttgccaaca |
155 |
Q |
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| T |
12035642 |
gtcgaagaaatgtgtcaaca |
12035623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 146
Target Start/End: Original strand, 12037137 - 12037251
Alignment:
| Q |
32 |
atcctaatgttagagggtttatggttatgaacggtgatcttttaatttttgctacagaagaaaaggtttacagttgcggtttggactgtgaacgatatat |
131 |
Q |
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||||| ||||||||||||||||||||||||| ||| |||| ||| ||||||||| |||| || ||||||||| |||||| | ||||| | ||||| |
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| T |
12037137 |
atcctcatgttagagggtttatggttatgaatggtaatctattagtttttgctatgaaagagaaactttacagttatggtttgaagggtgaaagttatat |
12037236 |
T |
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| Q |
132 |
gatggtggaggaaat |
146 |
Q |
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| T |
12037237 |
gatggtcgaagaaat |
12037251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 22177705 - 22177834
Alignment:
| Q |
17 |
gattgaaggagaaagatcctaatgttagagggtttatggttatgaacggtgatcttttaatttttgctacagaagaaaaggtttacagttgcggtttgga |
116 |
Q |
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||||||| |||| | |||| ||||||||||||||||| |||||||| ||| |||| ||| | |||||||| ||||| || |||| |||| |||||||| |
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| T |
22177705 |
gattgaatgagacaaatcccaatgttagagggtttattgttatgaatggtaatctcttagtctttgctacggaagagaaactttatagttatggtttgga |
22177804 |
T |
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| Q |
117 |
ctgtgaacgatatatgatggtggaggaaat |
146 |
Q |
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| T |
22177805 |
gggtgaaagttatatgatggtcgaagaaat |
22177834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 22169431 - 22169499
Alignment:
| Q |
18 |
attgaaggagaaagatcctaatgttagagggtttatggttatgaacggtgatcttttaatttttgctac |
86 |
Q |
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|||||| |||| | |||| |||||||||||||||||||||||||| ||| |||| ||| | |||||||| |
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| T |
22169431 |
attgaatgagacaaatcccaatgttagagggtttatggttatgaatggtaatctcttagtctttgctac |
22169499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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