View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12857_low_3 (Length: 366)

Name: NF12857_low_3
Description: NF12857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12857_low_3
NF12857_low_3
[»] chr5 (15 HSPs)
chr5 (26-345)||(37399060-37399376)
chr5 (27-345)||(37380584-37380896)
chr5 (165-345)||(37825500-37825686)
chr5 (27-345)||(37441531-37441854)
chr5 (248-345)||(37534687-37534781)
chr5 (248-345)||(37713211-37713305)
chr5 (248-345)||(37595917-37596014)
chr5 (248-345)||(37641468-37641562)
chr5 (27-252)||(37391180-37391406)
chr5 (242-345)||(37411779-37411879)
chr5 (248-345)||(37704255-37704349)
chr5 (267-345)||(37437288-37437366)
chr5 (267-345)||(37698380-37698458)
chr5 (248-341)||(37391420-37391510)
chr5 (161-252)||(37534795-37534889)
[»] chr3 (1 HSPs)
chr3 (276-345)||(14554646-14554715)
[»] chr4 (1 HSPs)
chr4 (252-345)||(24216220-24216310)


Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 26 - 345
Target Start/End: Original strand, 37399060 - 37399376
Alignment:
Q  26 gaaaattgcaaccacaaaaattctttttatcggagtgcctcatacggtttgaagaaagcacccctaactacaaaacaagagcatgccaagacttattcag 125  Q
    |||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37399060 gaaaattgcaaccacaaaaaatcttcttatcggagtgcctcgtacggtttgaagaaagcacccctaactagaaaacaagagcatgccaagacttattcag 37399159  T
Q  126 ttatgtttcacatataaataactagagtgtaatggattggtacatacaaaatcatcataaagtaaaaaagaaataatattggtaagagagtattagtcta 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37399160 ttatgtttcacatataaataactagagtgtaatggattggtacatacaaaatcatcataaagtaaaaaagaaataatattggtaagagagtattagtcta 37399259  T
Q  226 agtcgctctaaatggggtccttttttacctttcacttgttcttcttgttgttgttgattactcattttacttcccacactttctcactgtgcaacaaaca 325  Q
    |||||||| ||||||||||||||||||  |||||||||   ||||||||||||||||||||||||||||||||  ||||||||||||| |||||| | ||    
T  37399260 agtcgctcgaaatggggtccttttttaaatttcacttg---ttcttgttgttgttgattactcattttacttcatacactttctcactatgcaaccatca 37399356  T
Q  326 tgacaactctgccttgttac 345  Q
    ||||| ||||||||||||||    
T  37399357 tgacacctctgccttgttac 37399376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 27 - 345
Target Start/End: Original strand, 37380584 - 37380896
Alignment:
Q  27 aaaattgcaaccacaaaaattctttttatcggagtgcctcatacggtttgaag-aaagcacccctaactacaaaacaagagcatgccaagacttattcag 125  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||| |||||| ||||||||||| |||| ||||||| |||||||||||||||| || |    
T  37380584 aaaattgcaaccacaaaaattcttcttagcggagtgcctcatacgg-ttgaagaaaagcaccccttactataaaacaatagcatgccaagacttactcgg 37380682  T
Q  126 ttatgtttcacatataaataactagagtgtaatggattggtacatacaaaatcatcataaagtaaaaaagaaataatattggtaagagagtattagtcta 225  Q
    |||||||||  ||||||||| ||||||||||||||||||||||||||||   |||||| || ||||||||||| ||||||| ||| ||||||| ||||||    
T  37380683 ttatgtttcctatataaatacctagagtgtaatggattggtacatacaa---catcatcaactaaaaaagaaagaatattgataatagagtataagtcta 37380779  T
Q  226 agtcgctctaaatggggtccttttttacctttcacttgttcttcttgttgttgttgattactcattttacttcccacactttctcactgtgcaacaaaca 325  Q
    ||||| ||||||||||||||||||||||||||||||||   ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||    
T  37380780 agtcgttctaaatggggtccttttttacctttcacttg---ttcttgttgttgttgcttactcattttacttcccacactttctcattgtgcaaccaaca 37380876  T
Q  326 tgacaactctgccttgttac 345  Q
    ||| |  |||||||||||||    
T  37380877 tgatacatctgccttgttac 37380896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 165 - 345
Target Start/End: Complemental strand, 37825686 - 37825500
Alignment:
Q  165 gtacatacaaaatcat--cataaagtaaaaaagaaataatattggtaagagagtatta-gtctaagtcgctctaaatggggtccttttttacctttcact 261  Q
    |||||| |||||||||  ||||||| ||||| |||| |||| ||  |||||||||||| || |||||  ||||||||||| |||||||||||||||||||    
T  37825686 gtacatccaaaatcatatcataaaggaaaaaggaaagaatactgagaagagagtattaagtgtaagtttctctaaatgggatccttttttacctttcact 37825587  T
Q  262 tgttctt---cttgttgttgttgattactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttgttac 345  Q
    | |||||   ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  37825586 ttttcttgttcttgttgttgttgattactcattttacttcctacactttctcactgtgcaacaaacatgacaactctgccttgttac 37825500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 27 - 345
Target Start/End: Complemental strand, 37441854 - 37441531
Alignment:
Q  27 aaaattgcaaccacaaaaattctttttatcggagtgcctcatacggtttgaagaaa-gcacccctaactacaaaacaagagcatgccaagacttattcag 125  Q
    |||||||||||||||||||||||| |||  |||||||||||||||||| ||||||| ||  |||| |||||||||||||||||||||||||||| ||| |    
T  37441854 aaaattgcaaccacaaaaattcttcttaatggagtgcctcatacggtt-gaagaaaagcgtcccttactacaaaacaagagcatgccaagacttgttcgg 37441756  T
Q  126 ttatgtttcacatataaataactagagtgtaatggattggtacatacaaaatcatcataaagtaaaaaagaaataatattggtaagagagtattagtcta 225  Q
     | |||||| |||||||||||||| ||| ||||||||||||||||||| |||| ||   |||||||||||||| |||||||  ||||       ||| ||    
T  37441755 ctgtgtttcccatataaataactacagtttaatggattggtacatacataatcctc---aagtaaaaaagaaagaatattgagaaga------aagtgta 37441665  T
Q  226 agtcgctctaaatggggtcctttttta------------------cctttcacttgttcttcttgttgttgttgattactcattttacttcccacacttt 307  Q
    |||  |||||||| |||||||||||||                  |||||||| ||||||||   |||||| || ||||||||||||||||| | |||||    
T  37441664 agtatctctaaat-gggtccttttttattttattgccttattttacctttcacatgttcttc---ttgttgctgcttactcattttacttcctatacttt 37441569  T
Q  308 ctcactgtgcaacaaacatgacaactctgccttgttac 345  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  37441568 ctcactgtgaaacaaacatgacacctctgccttgttac 37441531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 248 - 345
Target Start/End: Complemental strand, 37534781 - 37534687
Alignment:
Q  248 ttttacctttcacttgttcttcttgttgttgttgattactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttgttac 345  Q
    ||||||||||||||| |||||   |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  37534781 ttttacctttcactttttctt---gttgttgttgattactcattttacttcctacactttctcactgtgcaacaaacatgacaactctgccttgttac 37534687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 248 - 345
Target Start/End: Complemental strand, 37713305 - 37713211
Alignment:
Q  248 ttttacctttcacttgttcttcttgttgttgttgattactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttgttac 345  Q
    |||||||||||||||   ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37713305 ttttacctttcactt---cttctcgttgttgttgcttactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttgttac 37713211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 248 - 345
Target Start/End: Complemental strand, 37596014 - 37595917
Alignment:
Q  248 ttttacctttcacttgttcttcttgttgttgttgattactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttgttac 345  Q
    ||||||||||||||| ||||| ||||||||| || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  37596014 ttttacctttcactttttcttgttgttgttgctgcttactcattttacttcctacactttctcattgtgcaacaaacatgacaactctgccttgttac 37595917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 248 - 345
Target Start/End: Complemental strand, 37641562 - 37641468
Alignment:
Q  248 ttttacctttcacttgttcttcttgttgttgttgattactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttgttac 345  Q
    |||||||||||||||   ||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||    
T  37641562 ttttacctttcactt---cttgttgttgttgttgattactcattttacttcctacactttctcactgtgcaaccaacatgacacctctgccttgttac 37641468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 252
Target Start/End: Original strand, 37391180 - 37391406
Alignment:
Q  27 aaaattgcaaccacaaaaattc----tttttatcggagtgcctcatacggtttgaag-aaagcacccctaactacaaaacaagagcatgccaagacttat 121  Q
    ||||||||||||||||||| ||    || |||| |||||||||||||||| |||||| ||||||||||| |||||| ||||||||||||||||||||| |    
T  37391180 aaaattgcaaccacaaaaaatcaatcttcttat-ggagtgcctcatacgg-ttgaagaaaagcaccccttactacataacaagagcatgccaagacttgt 37391277  T
Q  122 tcagttatgtttcacatataaataactagagtgtaatggattggtacatacaaaatcatcataaagtaaaaaagaaataatattggtaagagagtatt-a 220  Q
    || ||||||||||  ||||| |||  | |||  ||||  |||||||||| ||||||||||   || |||||| |||| | ||| |  |||||| | || |    
T  37391278 tcggttatgtttcctatatatatagattgaggctaatcaattggtacattcaaaatcatc---aactaaaaacgaaagactatcgagaagagatttttaa 37391374  T
Q  221 gtctaagtcgctctaaatggggtcctttttta 252  Q
    || ||||| |||||||||||||||||| ||||    
T  37391375 gtgtaagttgctctaaatggggtccttgttta 37391406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 242 - 345
Target Start/End: Original strand, 37411779 - 37411879
Alignment:
Q  242 gtccttttttacctttcacttgttcttcttgttgttgttgattactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttg 341  Q
    ||||| ||||||||||||||||||||| ||| || ||||   |||||||||||||||| |||| |||||| | |||||| | ||||||| || |||||||    
T  37411779 gtcctattttacctttcacttgttcttgttgctgctgtt---tactcattttacttcctacaccttctcattatgcaactatcatgacagctttgccttg 37411875  T
Q  342 ttac 345  Q
    ||||    
T  37411876 ttac 37411879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 345
Target Start/End: Complemental strand, 37704349 - 37704255
Alignment:
Q  248 ttttacctttcacttgttcttcttgttgttgttgattactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttgttac 345  Q
    |||||| ||||||||||||||   ||| ||| || ||||||||||||||||| ||||||||||| |||||| | ||||||| | ||| ||||||||||    
T  37704349 ttttacttttcacttgttctt---gttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgccttgttac 37704255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 345
Target Start/End: Complemental strand, 37437366 - 37437288
Alignment:
Q  267 ttcttgttgttgttgattactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttgttac 345  Q
    |||| |||||||||| ||||||| |||||| |||||||||||||| | |||||| | ||||||| ||||||||| ||||    
T  37437366 ttctcgttgttgttgcttactcactttactacccacactttctcattatgcaaccatcatgacacctctgccttattac 37437288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 345
Target Start/End: Complemental strand, 37698458 - 37698380
Alignment:
Q  267 ttcttgttgttgttgattactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttgttac 345  Q
    ||||||||||||||| ||||||||||||||||| ||||  ||||| | |||||| | |||||||  |||||||||||||    
T  37698458 ttcttgttgttgttgcttactcattttacttcctacacactctcattatgcaaccatcatgacagttctgccttgttac 37698380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 341
Target Start/End: Original strand, 37391420 - 37391510
Alignment:
Q  248 ttttacctttcacttgttcttcttgttgttgttgattactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttg 341  Q
    ||||||||||||||||||| |   |||||||||| ||||||||||||||||| | ||| ||||| ||||||||   ||||| | ||||||||||    
T  37391420 ttttacctttcacttgttcat---gttgttgttgcttactcattttacttcctatactctctcattgtgcaaccttcatgatagctctgccttg 37391510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 37534889 - 37534795
Alignment:
Q  161 attggtacatacaaaatcat--cataaagtaaaaaagaaataatattggtaagagagtatt-agtctaagtcgctctaaatggggtcctttttta 252  Q
    |||||||||| |||||||||  ||||||| ||||| ||||||||| ||  ||||||||||| ||| |||||  ||||||||||| ||||||||||    
T  37534889 attggtacatccaaaatcatatcataaaggaaaaaggaaataatactgagaagagagtattaagtgtaagtttctctaaatgggatcctttttta 37534795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 276 - 345
Target Start/End: Complemental strand, 14554715 - 14554646
Alignment:
Q  276 ttgttgattactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttgttac 345  Q
    |||||| ||||||||||||||||| | ||||||||| |||||||| ||||||||| ||||||||||||||    
T  14554715 ttgttgcttactcattttacttcctatactttctcattgtgcaaccaacatgacacctctgccttgttac 14554646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 24216220 - 24216310
Alignment:
Q  252 acctttcacttgttcttcttgttgttgttgattactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttgttac 345  Q
    ||||||||||||||| |   |||||||||| ||||||||||||||||  |||||| |||| | |||||| | |||||||  ||||| |||||||    
T  24216220 acctttcacttgttcat---gttgttgttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttac 24216310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University