View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12857_low_4 (Length: 353)

Name: NF12857_low_4
Description: NF12857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12857_low_4
NF12857_low_4
[»] chr5 (5 HSPs)
chr5 (1-332)||(41722877-41723209)
chr5 (1-329)||(41718154-41718483)
chr5 (4-95)||(34352226-34352318)
chr5 (4-95)||(34359934-34360026)
chr5 (1-95)||(29585544-29585640)
[»] chr4 (11 HSPs)
chr4 (1-163)||(48702065-48702228)
chr4 (1-163)||(48697376-48697539)
chr4 (1-94)||(24520269-24520363)
chr4 (1-93)||(42265883-42265976)
chr4 (1-93)||(42270602-42270695)
chr4 (65-163)||(30945803-30945901)
chr4 (73-163)||(30950517-30950607)
chr4 (1-40)||(10427323-10427362)
chr4 (1-40)||(30945722-30945761)
chr4 (1-40)||(30950428-30950467)
chr4 (186-279)||(48781266-48781360)
[»] chr2 (4 HSPs)
chr2 (1-163)||(5198899-5199062)
chr2 (1-49)||(830209-830258)
chr2 (1-49)||(825553-825602)
chr2 (4-36)||(30397147-30397179)
[»] chr3 (6 HSPs)
chr3 (9-163)||(2817502-2817658)
chr3 (1-95)||(5818757-5818852)
chr3 (1-94)||(5823519-5823613)
chr3 (1-40)||(4579134-4579173)
chr3 (1-40)||(24671254-24671293)
chr3 (1-49)||(54545906-54545955)
[»] chr6 (6 HSPs)
chr6 (1-95)||(26976375-26976470)
chr6 (1-94)||(1234680-1234774)
chr6 (1-93)||(27874234-27874327)
chr6 (65-163)||(27879036-27879134)
chr6 (9-50)||(6174292-6174333)
chr6 (1-40)||(27878955-27878994)
[»] chr8 (2 HSPs)
chr8 (1-94)||(9439616-9439710)
chr8 (1-94)||(9444336-9444430)
[»] scaffold0074 (1 HSPs)
scaffold0074 (1-40)||(27461-27500)
[»] chr7 (1 HSPs)
chr7 (1-40)||(16183866-16183905)
[»] chr1 (1 HSPs)
chr1 (1-40)||(46191274-46191313)


Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 41723209 - 41722877
Alignment:
Q  1 aacctcacaggagaaactatttttcctctctatattttt-ctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatgagtag 99  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723209 aacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatgagtag 41723110  T
Q  100 aatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttattaccatagataatagccaaactgccaaccaatttat 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723109 aatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttattaccatagataatagccaaactgccaaccaatttat 41723010  T
Q  200 gttgacaatgttggcaccgaaaatctgaatggtaaattgcaaagcccttttgtcaaacatgtattactgccatgtgaaaacatatcaacaaaaggtgact 299  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723009 gttgacaatgttggcaccgaaaatctgaatggtaaattgcaaaacccttttgtcaaacatgtattactgccatgtgaaaacatatcaacaaaaggtgact 41722910  T
Q  300 ttatggcttatgtgttcacacatgttcacaatc 332  Q
    |||||||||||||||||||||||||||||||||    
T  41722909 ttatggcttatgtgttcacacatgttcacaatc 41722877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 41718483 - 41718154
Alignment:
Q  1 aacctcacaggagaaactatttttcctctctatattttt-ctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatgagtag 99  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718483 aacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatgagtag 41718384  T
Q  100 aatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttattaccatagataatagccaaactgccaaccaatttat 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718383 aatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttattaccatagataatagccaaactgccaaccaatttat 41718284  T
Q  200 gttgacaatgttggcaccgaaaatctgaatggtaaattgcaaagcccttttgtcaaacatgtattactgccatgtgaaaacatatcaacaaaaggtgact 299  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718283 gttgacaatgttggcaccgaaaatctgaatggtaaattgcaaaacccttttgtcaaacatgtattactgccatgtgaaaacatatcaacaaaaggtgact 41718184  T
Q  300 ttatggcttatgtgttcacacatgttcaca 329  Q
    ||||||||||||||||||||||||||||||    
T  41718183 ttatggcttatgtgttcacacatgttcaca 41718154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 34352318 - 34352226
Alignment:
Q  4 ctcacaggagaaactatttttcctctctatattttt-ctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatga 95  Q
    |||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34352318 ctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatga 34352226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 34360026 - 34359934
Alignment:
Q  4 ctcacaggagaaactatttttcctctctatattttt-ctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatga 95  Q
    |||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34360026 ctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatga 34359934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 29585544 - 29585640
Alignment:
Q  1 aacctcacaggagaaactatttttcctctctatatttttc-tctcacta-tctaaacaagctttacttgttcttgtgttgttactgatttgggatga 95  Q
    ||||||||||||||||||| |||| ||||||||||||||| |||||||| |||| |||||||||||||||| |||||||||||||||||||||||||    
T  29585544 aacctcacaggagaaactaatttttctctctatatttttcctctcactactctagacaagctttacttgttgttgtgttgttactgatttgggatga 29585640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 48702065 - 48702228
Alignment:
Q  1 aacctcacaggagaaactatttttcctctctatatttt-tctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatgagtag 99  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48702065 aacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatgagtag 48702164  T
Q  100 aatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttat 163  Q
    |||||||||||||||||||||||||||  |  | || ||||||||| |||||| || |||||||    
T  48702165 aatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttat 48702228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 48697376 - 48697539
Alignment:
Q  1 aacctcacaggagaaactatttttcctctctatatttt-tctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatgagtag 99  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48697376 aacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatgagtag 48697475  T
Q  100 aatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttat 163  Q
    |||  ||||||||||||||||||||||  |  | || ||||||||| |||||| || |||||||    
T  48697476 aataatgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttat 48697539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 24520269 - 24520363
Alignment:
Q  1 aacctcacaggagaaactatttttcctctctatatttt-tctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatg 94  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24520269 aacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatg 24520363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 42265976 - 42265883
Alignment:
Q  1 aacctcacaggagaaactatttttcctctctatattttt-ctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggat 93  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42265976 aacctcacaggagaagctatttttcctctctatattttttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggat 42265883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 42270695 - 42270602
Alignment:
Q  1 aacctcacaggagaaactatttttcctctctatattttt-ctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggat 93  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270695 aacctcacaggagaagctatttttcctctctatattttttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggat 42270602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 163
Target Start/End: Original strand, 30945803 - 30945901
Alignment:
Q  65 ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttat 163  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |  | || ||||||||| |||||| || |||||||    
T  30945803 ttgttctggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttat 30945901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 73 - 163
Target Start/End: Original strand, 30950517 - 30950607
Alignment:
Q  73 gtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttat 163  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |  | || ||||||||| |||||| || |||||||    
T  30950517 gtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttat 30950607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 10427362 - 10427323
Alignment:
Q  1 aacctcacaggagaaactatttttcctctctatatttttc 40  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  10427362 aacctcacaggagaaactatatttcctctctatatttttc 10427323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 30945722 - 30945761
Alignment:
Q  1 aacctcacaggagaaactatttttcctctctatatttttc 40  Q
    ||||||||||||||||||| |||| |||||||||||||||    
T  30945722 aacctcacaggagaaactaatttttctctctatatttttc 30945761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 30950428 - 30950467
Alignment:
Q  1 aacctcacaggagaaactatttttcctctctatatttttc 40  Q
    ||||||||||||||||||| |||| |||||||||||||||    
T  30950428 aacctcacaggagaaactaatttttctctctatatttttc 30950467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 279
Target Start/End: Complemental strand, 48781360 - 48781266
Alignment:
Q  186 gccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaa--gcccttttgtcaaacatgtattactgccatgtgaaaa 279  Q
    ||||||||||||||||||| ||| |  ||||| ||||| | |||| ||||| |||||  ||||||| ||||||||  | |||||||||||||||||    
T  48781360 gccaaccaatttatgttgaaaatatatgcaccaaaaatataaatgttaaat-gcaaaaagccctttcgtcaaacaccttttactgccatgtgaaaa 48781266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 5198899 - 5199062
Alignment:
Q  1 aacctcacaggagaaactatttttcctctctatatttt-tctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatgagtag 99  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5198899 aacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatgagtag 5198998  T
Q  100 aatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttat 163  Q
    |||||||||||||||||||||||||||  |  | || ||||||||| |||||| || |||||||    
T  5198999 aatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttat 5199062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 830258 - 830209
Alignment:
Q  1 aacctcacaggagaaactatttttcctctctatattttt-ctctcactat 49  Q
    ||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  830258 aacctcacaggagaaactaatttttctctctatatttttcctctcactat 830209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 825602 - 825553
Alignment:
Q  1 aacctcacaggagaaactatttttcctctctatattttt-ctctcactat 49  Q
    |||||| |||||||||||| |||| |||||||||||||| ||||||||||    
T  825602 aacctcgcaggagaaactaatttttctctctatatttttcctctcactat 825553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 30397147 - 30397179
Alignment:
Q  4 ctcacaggagaaactatttttcctctctatatt 36  Q
    ||||||||||||||||| |||||||||||||||    
T  30397147 ctcacaggagaaactatatttcctctctatatt 30397179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 8e-43; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 2817502 - 2817658
Alignment:
Q  9 aggagaaactatttttcctctctatattttt-ctctcactatc-taaacaagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtg 106  Q
    ||||||||||||||||||||||||||||||| |||||| || | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2817502 aggagaaactatttttcctctctatattttttctctcattaccctaaacaagttttacttgttcttgtgttgttactgatttgggatgagtagaatggtg 2817601  T
Q  107 caagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttat 163  Q
    ||||||||||||||| ||||  |  | || ||||||||| |||||| || |||||||    
T  2817602 caagggacatgctatgtatactagtgaaagagccatgccccaaccaattgcatttat 2817658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 5818757 - 5818852
Alignment:
Q  1 aacctcacaggagaaactatttttcctctctatatttt-tctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatga 95  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5818757 aacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatga 5818852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 5823519 - 5823613
Alignment:
Q  1 aacctcacaggagaaactatttttcctctctatatttt-tctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatg 94  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5823519 aacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatg 5823613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 4579173 - 4579134
Alignment:
Q  1 aacctcacaggagaaactatttttcctctctatatttttc 40  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  4579173 aacctcacaggagaaactatatttcctctctatatttttc 4579134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 24671254 - 24671293
Alignment:
Q  1 aacctcacaggagaaactatttttcctctctatatttttc 40  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  24671254 aacctcacaggagaaactatatttcctctctatatttttc 24671293  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 54545955 - 54545906
Alignment:
Q  1 aacctcacaggagaaactatttttcctctctatattttt-ctctcactat 49  Q
    ||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  54545955 aacctcacaggagaaactaatttttctctctatatttttcctctcactat 54545906  T

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Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 26976375 - 26976470
Alignment:
Q  1 aacctcacaggagaaactatttttcctctctatatttt-tctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatga 95  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26976375 aacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatga 26976470  T

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Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 1234774 - 1234680
Alignment:
Q  1 aacctcacaggagaaactatttttcctctctatattttt-ctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatg 94  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1234774 aacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatg 1234680  T

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Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 27874234 - 27874327
Alignment:
Q  1 aacctcacaggagaaactatttttcctctctatatttt-tctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggat 93  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27874234 aacctcacaggagaagctatttttcctctctatattttttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggat 27874327  T

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Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 163
Target Start/End: Original strand, 27879036 - 27879134
Alignment:
Q  65 ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttat 163  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |  | || ||||||||| |||||| || |||||||    
T  27879036 ttgttctggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttat 27879134  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 6174292 - 6174333
Alignment:
Q  9 aggagaaactatttttcctctctatatttttctctcactatc 50  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  6174292 aggagaaactatatttcctttctatatttttctctcactatc 6174333  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 27878955 - 27878994
Alignment:
Q  1 aacctcacaggagaaactatttttcctctctatatttttc 40  Q
    ||||||||||||||||||| |||| |||||||||||||||    
T  27878955 aacctcacaggagaaactaatttttctctctatatttttc 27878994  T

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Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 9439616 - 9439710
Alignment:
Q  1 aacctcacaggagaaactatttttcctctctatatttt-tctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatg 94  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9439616 aacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatg 9439710  T

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Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 9444336 - 9444430
Alignment:
Q  1 aacctcacaggagaaactatttttcctctctatatttt-tctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatg 94  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9444336 aacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatg 9444430  T

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Target: scaffold0074 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 27461 - 27500
Alignment:
Q  1 aacctcacaggagaaactatttttcctctctatatttttc 40  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  27461 aacctcacaggagaaactatatttcctctctatatttttc 27500  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 16183866 - 16183905
Alignment:
Q  1 aacctcacaggagaaactatttttcctctctatatttttc 40  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  16183866 aacctcacaggagaaactatatttcctctctatatttttc 16183905  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 46191313 - 46191274
Alignment:
Q  1 aacctcacaggagaaactatttttcctctctatatttttc 40  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  46191313 aacctcacaggagaaactatatttcctctctatatttttc 46191274  T

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