View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12857_low_5 (Length: 341)
Name: NF12857_low_5
Description: NF12857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12857_low_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 187 - 341
Target Start/End: Original strand, 6703672 - 6703830
Alignment:
| Q |
187 |
aaatctatggtagcatcagctaaatgaaaatgatatgttagcatctaatcattgttnnnnnnn-cttagaaattttatcctaggtcagatctagctatag |
285 |
Q |
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| T |
6703672 |
aaatctatggtagcatcatctaaataaaaatgataagttatcatctaatcattgttaaaaaaaacgtagatattttatcctaggtcagatctagctatag |
6703771 |
T |
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| Q |
286 |
atatct---taagagcatgcatgattatttaaagatccaatgtatatgctaccccgttt |
341 |
Q |
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| T |
6703772 |
atatctaattaagagcatgcatgattatttaaagatccaatgtatatgctaccccgttt |
6703830 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 34262033 - 34262084
Alignment:
| Q |
28 |
gatggtagggagagaggtgctatgggagaaggaagaatgagagtttgtacgc |
79 |
Q |
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| T |
34262033 |
gatgggagggagagatgtgctatctgagaaggaagaaggagagtttgtacgc |
34262084 |
T |
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