View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12857_low_6 (Length: 318)

Name: NF12857_low_6
Description: NF12857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12857_low_6
NF12857_low_6
[»] chr6 (17 HSPs)
chr6 (10-252)||(16461569-16461811)
chr6 (38-197)||(6689160-6689316)
chr6 (22-119)||(2919958-2920053)
chr6 (30-184)||(1975260-1975415)
chr6 (87-160)||(14607794-14607867)
chr6 (89-176)||(33704117-33704205)
chr6 (36-191)||(30702648-30702801)
chr6 (89-197)||(21883260-21883368)
chr6 (80-150)||(8150818-8150889)
chr6 (41-107)||(30705248-30705314)
chr6 (34-67)||(14607865-14607898)
chr6 (56-105)||(19267059-19267108)
chr6 (107-191)||(18816933-18817017)
chr6 (95-139)||(35188058-35188102)
chr6 (268-303)||(16461118-16461153)
chr6 (113-191)||(24901708-24901786)
chr6 (22-67)||(17848977-17849022)
[»] chr3 (23 HSPs)
chr3 (37-194)||(24309827-24309984)
chr3 (16-197)||(36475397-36475578)
chr3 (25-193)||(26285820-26285991)
chr3 (37-197)||(7856448-7856610)
chr3 (39-197)||(23778208-23778371)
chr3 (22-119)||(25032174-25032271)
chr3 (89-187)||(52308856-52308954)
chr3 (97-197)||(38572987-38573087)
chr3 (38-146)||(30136536-30136644)
chr3 (38-146)||(30142665-30142773)
chr3 (38-146)||(30146087-30146195)
chr3 (56-160)||(36478215-36478319)
chr3 (38-147)||(6714413-6714522)
chr3 (68-160)||(395926-396019)
chr3 (107-191)||(25070719-25070803)
chr3 (133-197)||(36478039-36478103)
chr3 (107-191)||(36617785-36617869)
chr3 (30-88)||(35504209-35504267)
chr3 (107-184)||(35502475-35502552)
chr3 (36-84)||(19832034-19832082)
chr3 (107-191)||(26903171-26903255)
chr3 (113-164)||(23794964-23795015)
chr3 (27-69)||(8034704-8034746)
[»] chr8 (18 HSPs)
chr8 (31-197)||(10381366-10381532)
chr8 (27-194)||(44873226-44873393)
chr8 (30-197)||(7681358-7681525)
chr8 (30-186)||(29866106-29866264)
chr8 (22-195)||(32161390-32161561)
chr8 (22-181)||(24556915-24557074)
chr8 (56-197)||(29841162-29841304)
chr8 (22-113)||(6978410-6978501)
chr8 (40-182)||(2148338-2148481)
chr8 (59-147)||(43421484-43421573)
chr8 (89-186)||(11993677-11993774)
chr8 (38-197)||(7388123-7388283)
chr8 (89-168)||(34696976-34697055)
chr8 (90-139)||(35990865-35990914)
chr8 (107-191)||(45486203-45486287)
chr8 (116-197)||(6802755-6802836)
chr8 (39-107)||(37042536-37042604)
chr8 (38-77)||(6802833-6802872)
[»] chr5 (15 HSPs)
chr5 (28-197)||(34751072-34751241)
chr5 (27-197)||(36744877-36745048)
chr5 (30-197)||(43144505-43144674)
chr5 (30-184)||(5568956-5569111)
chr5 (27-157)||(26459633-26459763)
chr5 (22-164)||(25819011-25819155)
chr5 (22-198)||(5069777-5069957)
chr5 (89-197)||(7607256-7607364)
chr5 (36-170)||(33824755-33824890)
chr5 (56-184)||(39509128-39509257)
chr5 (39-181)||(980159-980302)
chr5 (22-94)||(22536894-22536966)
chr5 (30-119)||(36633907-36633998)
chr5 (108-197)||(29669996-29670085)
chr5 (36-99)||(35676348-35676410)
[»] chr2 (12 HSPs)
chr2 (22-197)||(7700275-7700449)
chr2 (22-197)||(32032910-32033085)
chr2 (22-197)||(27447699-27447874)
chr2 (22-193)||(18703657-18703817)
chr2 (89-197)||(34190029-34190137)
chr2 (33-197)||(34878634-34878799)
chr2 (38-184)||(38417741-38417888)
chr2 (22-119)||(11562101-11562195)
chr2 (122-197)||(3357085-3357159)
chr2 (38-96)||(16639293-16639351)
chr2 (107-191)||(4075463-4075547)
chr2 (27-67)||(6141404-6141444)
[»] chr4 (15 HSPs)
chr4 (56-198)||(2158600-2158742)
chr4 (27-160)||(4377177-4377310)
chr4 (37-195)||(2813940-2814098)
chr4 (27-160)||(36247768-36247902)
chr4 (36-197)||(1111949-1112110)
chr4 (39-160)||(33517982-33518104)
chr4 (59-119)||(50723219-50723279)
chr4 (22-141)||(52849787-52849898)
chr4 (16-72)||(1758199-1758255)
chr4 (122-197)||(33518109-33518184)
chr4 (128-196)||(36247913-36247980)
chr4 (16-66)||(21161523-21161573)
chr4 (36-105)||(35390427-35390496)
chr4 (127-197)||(25023227-25023296)
chr4 (30-84)||(51070340-51070394)
[»] scaffold0002 (1 HSPs)
scaffold0002 (48-197)||(461322-461471)
[»] chr7 (25 HSPs)
chr7 (36-197)||(30074623-30074786)
chr7 (70-197)||(2945390-2945519)
chr7 (56-197)||(25232916-25233058)
chr7 (38-197)||(46090190-46090349)
chr7 (33-197)||(27080365-27080526)
chr7 (33-197)||(27197775-27197936)
chr7 (39-160)||(34346839-34346960)
chr7 (52-197)||(33941631-33941767)
chr7 (89-197)||(38300373-38300481)
chr7 (89-197)||(24658426-24658533)
chr7 (42-148)||(26824481-26824590)
chr7 (27-165)||(32221862-32222003)
chr7 (73-182)||(39785484-39785594)
chr7 (36-139)||(16841044-16841146)
chr7 (102-197)||(1691663-1691758)
chr7 (26-97)||(49143945-49144016)
chr7 (38-197)||(36906214-36906369)
chr7 (67-197)||(26787257-26787388)
chr7 (30-84)||(7899428-7899482)
chr7 (30-84)||(26050108-26050162)
chr7 (30-84)||(26059467-26059521)
chr7 (107-191)||(39781006-39781090)
chr7 (98-197)||(40716908-40717008)
chr7 (107-195)||(43265938-43266026)
chr7 (49-78)||(18942679-18942708)
[»] chr1 (17 HSPs)
chr1 (25-197)||(8064919-8065091)
chr1 (22-197)||(27464253-27464428)
chr1 (59-160)||(10781249-10781350)
chr1 (57-197)||(9539608-9539748)
chr1 (30-125)||(23347800-23347896)
chr1 (34-97)||(34912303-34912366)
chr1 (30-84)||(281144-281198)
chr1 (33-84)||(9516763-9516814)
chr1 (39-73)||(9539762-9539796)
chr1 (30-84)||(43909373-43909427)
chr1 (128-197)||(10781165-10781234)
chr1 (37-73)||(10781365-10781401)
chr1 (133-197)||(23353435-23353499)
chr1 (27-73)||(39299269-39299315)
chr1 (40-70)||(42126356-42126386)
chr1 (34-83)||(35438898-35438947)
chr1 (107-191)||(1017013-1017097)
[»] scaffold0311 (1 HSPs)
scaffold0311 (16-197)||(838-1015)
[»] scaffold0535 (1 HSPs)
scaffold0535 (39-143)||(9625-9730)


Alignment Details
Target: chr6 (Bit Score: 147; Significance: 2e-77; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 10 - 252
Target Start/End: Complemental strand, 16461811 - 16461569
Alignment:
Q  10 ggcgagtagatgtttgatacatgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacatt 109  Q
    ||||| |||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||    
T  16461811 ggcgactagacgtttgatatatatggggctaaaatttcaaagaaacaataatgcaaactatattaaaaataagaaataacattgtttgatacaatatatt 16461712  T
Q  110 acaatgaaaattgtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatatagcatcatgt--- 206  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||| ||||      ||||||||||||||| |||| |||       
T  16461711 acaatgaaaattgtctcctattcatttgttgaaaatgagcttaaatgacatcattgttaattgttaa------atctctttctatataccatcgtgtgag 16461618  T
Q  207 ---gagagagagtataccatcgaatttttattcttttttgggtcaagta 252  Q
       ||||||||||||||||||| ||||||||| ||||||||||||||||    
T  16461617 agagagagagagtataccatcggatttttatttttttttgggtcaagta 16461569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 38 - 197
Target Start/End: Original strand, 6689160 - 6689316
Alignment:
Q  38 ctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaattgtctcctatctatttg 137  Q
    |||||||| |||||||||||||||||||| ||||||||||| ||   ||||||  |||||||||||||||||||||||||||| |||||||||| ||||     
T  6689160 ctaaaattacaaagaaacaataatgcaaattatattaaaaaaaa---ataacaaggtttgatacaatacattacaatgaaaatcgtctcctatccattta 6689256  T
Q  138 ttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    |||||| |||||| ||||||||| |||| ||||| |||||||| ||||||||||||||||    
T  6689257 ttgaaattgagctaaaatgacatcattgctaattgttaaaagatcatctctttctatata 6689316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 2920053 - 2919958
Alignment:
Q  22 tttgatacatgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaa 119  Q
    ||||||||||||||||||||| |||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2920053 tttgatacatgtggggctaaattttcaaagaaa--ataatgcaaactatattaaaaataagaaataacattgtttgatacaatacattacaatgaaaa 2919958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 1975415 - 1975260
Alignment:
Q  30 atgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatac-attacaatgaaaattgtctcct 128  Q
    ||||| || |||||||| ||||||| ||||||| ||||||||||||||| || ||||||||||| ||||| |||||| || ||||||||||||||||| |    
T  1975415 atgtgtggttaaaattttaaagaaaaaataatgtaaactatattaaaaataataaataacattggttgattcaatacaataacaatgaaaattgtctcat 1975316  T
Q  129 atctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacat 184  Q
     |||||||| |||||||||| | |||| | |  |||| ||||||||||||||||||    
T  1975315 gtctatttgatgaaaatgagttaaaataatagcattgctaatttttaaaagaacat 1975260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 14607867 - 14607794
Alignment:
Q  87 aacattgtttgatacaatacattacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaatgacat 160  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||| ||||    
T  14607867 aacattgtttgatacaatacattacaatgaaaattttctcctatccatttgttgaaaatgagctaaaataacat 14607794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 33704117 - 33704205
Alignment:
Q  89 cattgtttgatacaatacattacaatgaaaattgtctcctatctatttgttgaaaatgagct-taaatgacattattgttaatttttaa 176  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||  ||||||||| |||||||||| ||||    
T  33704117 cattgtttgatacaatacattacaataaaaattgtcttctatctatttgttaaaaatgagctaaaaatgacatcattgttaattgttaa 33704205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 191
Target Start/End: Original strand, 30702648 - 30702801
Alignment:
Q  36 ggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatac-attacaatgaaaattgtctcctatctat 134  Q
    |||||||||||||||||||| ||   ||||| |||| |||||| ||||||||||||||||||||||||||| || || || ||||| |||| ||||| |     
T  30702648 ggctaaaatttcaaagaaacgat---gcaaattatactaaaaataagaaataacattgtttgatacaatacaatgacgataaaaatcgtctactatccag 30702744  T
Q  135 ttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttc 191  Q
    |||| ||||||||||| |||| || | | | |||||| | |||||||||||||||||    
T  30702745 ttgtcgaaaatgagctaaaataacttcagttttaattgtaaaaagaacatctctttc 30702801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 89 - 197
Target Start/End: Original strand, 21883260 - 21883368
Alignment:
Q  89 cattgtttgatacaatacattacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctct 188  Q
    |||||||| ||||||| ||||||||||||||| |||| ||||| ||||||||||||||||   ||||||||  |||| ||||| || | |||| ||||||    
T  21883260 cattgtttaatacaatgcattacaatgaaaatcgtcttctatccatttgttgaaaatgagaaaaaatgacagcattgctaattgtttatagaatatctct 21883359  T
Q  189 ttctatata 197  Q
    |||||||||    
T  21883360 ttctatata 21883368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 8150889 - 8150818
Alignment:
Q  80 aagaaataacattgtttgatacaataca-ttacaatgaaaattgtctcctatctatttgttgaaaatgagct 150  Q
    ||||| |||||||||||||| ||||||| ||||||| ||||| |||| ||||| ||||||||||||||||||    
T  8150889 aagaattaacattgtttgatgcaatacaattacaataaaaatcgtctactatccatttgttgaaaatgagct 8150818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 30705248 - 30705314
Alignment:
Q  41 aaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaataca 107  Q
    ||||||||||||||  || || |||| |||| |||||| ||||||||||||||||||||||||||||    
T  30705248 aaatttcaaagaaattatgattcaaattatactaaaaataagaaataacattgtttgatacaataca 30705314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 14607898 - 14607865
Alignment:
Q  34 ggggctaaaatttcaaagaaacaataatgcaaac 67  Q
    ||||||||||||||||||||||||||||||||||    
T  14607898 ggggctaaaatttcaaagaaacaataatgcaaac 14607865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 19267108 - 19267059
Alignment:
Q  56 aataatgcaaactatattaaaaagaagaaataacattgtttgatacaata 105  Q
    ||||||| ||||||||||||||| ||||||||||||| ||||||| ||||    
T  19267108 aataatgtaaactatattaaaaataagaaataacattatttgatataata 19267059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 18816933 - 18817017
Alignment:
Q  107 attacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttc 191  Q
    |||||||||||||| ||||   ||| ||||||||||||||||||  ||| |||| | || ||||| | |||||||||||||||||    
T  18816933 attacaatgaaaatcgtctgtcatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttc 18817017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 35188058 - 35188102
Alignment:
Q  95 ttgatacaatacattacaatgaaaattgtctcctatctatttgtt 139  Q
    |||||||||||||||||||||||||| ||||| |||| |||||||    
T  35188058 ttgatacaatacattacaatgaaaatcgtctcttatccatttgtt 35188102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 303
Target Start/End: Complemental strand, 16461153 - 16461118
Alignment:
Q  268 gggtcaagtataccaccggattttaatgctaaagtt 303  Q
    ||||||||||||||| ||||||||||||||||||||    
T  16461153 gggtcaagtataccatcggattttaatgctaaagtt 16461118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 191
Target Start/End: Original strand, 24901708 - 24901786
Alignment:
Q  113 atgaaaattgtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttc 191  Q
    |||||||| |||| | ||| ||||||||||||||||||  ||| |||| | || ||||| | |||||||||||||||||    
T  24901708 atgaaaatcgtctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttc 24901786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 17849022 - 17848977
Alignment:
Q  22 tttgatacatgtggggctaaaatttcaaagaaacaataatgcaaac 67  Q
    |||| ||||||||| | |||||||| ||||||||||||||||||||    
T  17849022 tttggtacatgtggagttaaaattttaaagaaacaataatgcaaac 17848977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 8e-58; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 37 - 194
Target Start/End: Original strand, 24309827 - 24309984
Alignment:
Q  37 gctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaattgtctcctatctattt 136  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||    
T  24309827 gctaaaatttcaaagaaacaataatgcaaactatattaaaaataagaaataatattgtttgatacaatacattacaatgaaaatcgtctcctatccattt 24309926  T
Q  137 gttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctat 194  Q
    ||||||||| ||   |||| |||| |||||||||| ||||||||||||||||||||||    
T  24309927 gttgaaaataagtcaaaatcacatcattgttaattgttaaaagaacatctctttctat 24309984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 36475397 - 36475578
Alignment:
Q  16 tagatgtttgatacatgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatg 115  Q
    ||||| |||| || |||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  36475397 tagatttttggtatatgtggggttaaaatttcaaagaaacaataacgcaaactatattaaaaataagaaataacattgtttgatacaatacactacaatg 36475496  T
Q  116 aaaattgtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    ||||| |||||| ||  ||||||| |||||||||  ||||||||| |||| ||||| |||||||||||||||||| ||||||    
T  36475497 aaaatcgtctcccattcatttgttaaaaatgagcgaaaatgacatcattgctaattgttaaaagaacatctctttttatata 36475578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 25 - 193
Target Start/End: Complemental strand, 26285991 - 26285820
Alignment:
Q  25 gatacatgtggggctaaaatttcaaagaaa---caataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaatt 121  Q
    |||| |||||||||| |||||||||| |||   |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  26285991 gatatatgtggggcttaaatttcaaaaaaatagcaataatgcaaactatattaaaaataagaaataacattgtttgatacaatacattacaatgaaaatc 26285892  T
Q  122 gtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttcta 193  Q
    || ||||||| |||||||||||||||| | ||| ||||| |||| ||||| |||||||||||| ||||||||    
T  26285891 gtttcctatccatttgttgaaaatgagttaaaaggacatcattgctaattgttaaaagaacatatctttcta 26285820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 37 - 197
Target Start/End: Original strand, 7856448 - 7856610
Alignment:
Q  37 gctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaa--ataacattgtttgatacaatacattacaatgaaaattgtctcctatctat 134  Q
    |||||||||||||||||||||||||||||| ||||||||||| || ||  | || ||||||||||||||||||||| ||| ||||| |||||||||| ||    
T  7856448 gctaaaatttcaaagaaacaataatgcaaattatattaaaaataaaaataaaaatattgtttgatacaatacattataataaaaatcgtctcctatccat 7856547  T
Q  135 ttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    ||||| |||||||||| ||||||| | |||||||||| |||||||||||||||||||||||||    
T  7856548 ttgttaaaaatgagctaaaatgacgtcattgttaattgttaaaagaacatctctttctatata 7856610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 23778208 - 23778371
Alignment:
Q  39 taaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaataca-----ttacaatgaaaattgtctcctatcta 133  Q
    |||| ||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||     ||||||| ||||| ||||| |||| |    
T  23778208 taaattttcaaagaaaaaataatacaaactatattaaaaataagaaataacattgtttgatacaatacattacattacaataaaaatggtctcttatcca 23778307  T
Q  134 tttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    ||||||||||||||||| ||||||||| |||| ||||| |||||||||||||||||||||||||    
T  23778308 tttgttgaaaatgagctaaaatgacatcattgctaattgttaaaagaacatctctttctatata 23778371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 25032271 - 25032174
Alignment:
Q  22 tttgatacatgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaa 119  Q
    ||||||||||||||||||||| |||||||| |||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25032271 tttgatacatgtggggctaaattttcaaaggaacaataatgcaaattacattaaaaataagaaataacattgtttgatacaatacattacaatgaaaa 25032174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 89 - 187
Target Start/End: Complemental strand, 52308954 - 52308856
Alignment:
Q  89 cattgtttgatacaatacattacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctc 187  Q
    |||||||||||||| |||||||||||||||||  ||||||||| |||||||||||||||||| ||||||||| |||||||||| |||| ||||||||||    
T  52308954 cattgtttgatacactacattacaatgaaaatcatctcctatccatttgttgaaaatgagctaaaatgacatcattgttaattgttaatagaacatctc 52308856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 38572987 - 38573087
Alignment:
Q  97 gatacaatacattacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatat 196  Q
    |||||||| ||||||||||||||| |||||||||| |||||||||||||||||| ||||||||  |||| ||||| |||| |||||||||||||||||||    
T  38572987 gatacaatgcattacaatgaaaatcgtctcctatccatttgttgaaaatgagctaaaatgacagcattgctaattgttaatagaacatctctttctatat 38573086  T
Q  197 a 197  Q
    |    
T  38573087 a 38573087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 38 - 146
Target Start/End: Original strand, 30136536 - 30136644
Alignment:
Q  38 ctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatac-attacaatgaaaattgtctcctatctattt 136  Q
    ||||||||| ||| ||| |||||||||||| |||| ||||| ||||||||||||||||||||||||||| ||| |||||||||| |||||||||| ||||    
T  30136536 ctaaaattttaaaaaaa-aataatgcaaacaatatgaaaaataagaaataacattgtttgatacaatacaatttcaatgaaaatggtctcctatccattt 30136634  T
Q  137 gttgaaaatg 146  Q
    ||||||||||    
T  30136635 gttgaaaatg 30136644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 38 - 146
Target Start/End: Original strand, 30142665 - 30142773
Alignment:
Q  38 ctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatac-attacaatgaaaattgtctcctatctattt 136  Q
    ||||||||| ||| ||| |||||||||||| |||| ||||| ||||||||||||||||||||||||||| ||| |||||||||| |||||||||| ||||    
T  30142665 ctaaaattttaaaaaaa-aataatgcaaacaatatgaaaaataagaaataacattgtttgatacaatacaatttcaatgaaaatggtctcctatccattt 30142763  T
Q  137 gttgaaaatg 146  Q
    ||||||||||    
T  30142764 gttgaaaatg 30142773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 38 - 146
Target Start/End: Original strand, 30146087 - 30146195
Alignment:
Q  38 ctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatac-attacaatgaaaattgtctcctatctattt 136  Q
    ||||||||| ||| ||| |||||||||||| |||| ||||| ||||||||||||||||||||||||||| ||| |||||||||| |||||||||| ||||    
T  30146087 ctaaaattttaaaaaaa-aataatgcaaacaatatgaaaaataagaaataacattgtttgatacaatacaatttcaatgaaaatggtctcctatccattt 30146185  T
Q  137 gttgaaaatg 146  Q
    ||||||||||    
T  30146186 gttgaaaatg 30146195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 56 - 160
Target Start/End: Complemental strand, 36478319 - 36478215
Alignment:
Q  56 aataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaat 155  Q
    |||| |||||||||||||||||| ||||||||| ||||||||||||||||| ||||||| ||||||||||   ||| |||||||||||||||| | ||||    
T  36478319 aatattgcaaactatattaaaaataagaaataatattgtttgatacaatacgttacaattaaaattgtctttgatccatttgttgaaaatgagttaaaat 36478220  T
Q  156 gacat 160  Q
    |||||    
T  36478219 gacat 36478215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 6714522 - 6714413
Alignment:
Q  38 ctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaataca-ttacaatgaaaattgtctcctatctattt 136  Q
    ||||||||| ||||||| |||||||  || ||||||||||| ||||||||||||  ||||||  |||||| ||||||||||||||||||| |||||||||    
T  6714522 ctaaaattttaaagaaataataatgttaattatattaaaaataagaaataacata-tttgatgtaatacaattacaatgaaaattgtctcatatctattt 6714424  T
Q  137 gttgaaaatga 147  Q
    |||||||||||    
T  6714423 gttgaaaatga 6714413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 68 - 160
Target Start/End: Complemental strand, 396019 - 395926
Alignment:
Q  68 tatattaaaaagaagaaataacattgtttgatacaataca-ttacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaatgacat 160  Q
    |||| |||||| |||||||||||||||||||||||||||| |||| ||||||||||||| | ||| |||||||||||||||||| |||| ||||    
T  396019 tatactaaaaataagaaataacattgtttgatacaatacatttacgatgaaaattgtctaccatccatttgttgaaaatgagctaaaataacat 395926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 191
Target Start/End: Complemental strand, 25070803 - 25070719
Alignment:
Q  107 attacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttc 191  Q
    |||||||||||||| |||| | ||| ||||||||||||||||||  ||| |||| | || ||||| | |||||||||||||||||    
T  25070803 attacaatgaaaatcgtctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttc 25070719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 36478103 - 36478039
Alignment:
Q  133 atttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    |||| ||||||||||||| ||||||||| |||  ||||| |||||||||||||| ||||||||||    
T  36478103 atttcttgaaaatgagctaaaatgacatcattactaattgttaaaagaacatctttttctatata 36478039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 191
Target Start/End: Complemental strand, 36617869 - 36617785
Alignment:
Q  107 attacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttc 191  Q
    |||||||||||||| |||| | ||| ||||||||||||||||||  ||| |||| | || ||||| | |||||||||||||||||    
T  36617869 attacaatgaaaatcgtctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttc 36617785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 35504267 - 35504209
Alignment:
Q  30 atgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataa 88  Q
    ||||| ||||||||||| ||||||| ||||||||||| ||||||||||| |||| ||||    
T  35504267 atgtgtggctaaaatttaaaagaaaaaataatgcaaattatattaaaaataagacataa 35504209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 35502552 - 35502475
Alignment:
Q  107 attacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacat 184  Q
    |||||||| ||| ||||||| |||| ||||||| |||||||| | |||| |||  |||| ||||||||||||||||||    
T  35502552 attacaattaaatttgtctcgtatccatttgttaaaaatgagttaaaataacagcattgctaatttttaaaagaacat 35502475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 19832082 - 19832034
Alignment:
Q  36 ggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaa 84  Q
    |||||||||||  |||||||||||||||||| ||||||||||| |||||    
T  19832082 ggctaaaattttgaagaaacaataatgcaaattatattaaaaataagaa 19832034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 26903171 - 26903255
Alignment:
Q  107 attacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttc 191  Q
    |||||||||||||| ||||   ||| ||||||||||||||||||  ||| |||| | || ||||| | |||||||||||||||||    
T  26903171 attacaatgaaaatcgtctgtcatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttc 26903255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 164
Target Start/End: Original strand, 23794964 - 23795015
Alignment:
Q  113 atgaaaattgtctcctatctatttgttgaaaatgagcttaaatgacattatt 164  Q
    |||||||| ||||| |||| |||||||||||||||||| ||| |||||||||    
T  23794964 atgaaaatcgtctcttatccatttgttgaaaatgagctaaaaagacattatt 23795015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 8034704 - 8034746
Alignment:
Q  27 tacatgtggggctaaaatttcaaagaaacaataatgcaaacta 69  Q
    ||||||||| |||||||||||||| ||| ||||||||||||||    
T  8034704 tacatgtggagctaaaatttcaaataaataataatgcaaacta 8034746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 5e-56; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 31 - 197
Target Start/End: Original strand, 10381366 - 10381532
Alignment:
Q  31 tgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaattgtctcctat 130  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||| ||||||||||||| ||||||||||| |||    
T  10381366 tgtgaggctaaaatttcaaagaaacaataatgtaaactatattaaaaataagaagtaacattgtttgatataatacattacaatcaaaattgtctcttat 10381465  T
Q  131 ctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    ||||||||||||||||| || ||||||||| |||||||||| |||||| ||||||| ||| ||||||    
T  10381466 ctatttgttgaaaatgaactaaaatgacatcattgttaattgttaaaataacatctgtttatatata 10381532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 27 - 194
Target Start/End: Original strand, 44873226 - 44873393
Alignment:
Q  27 tacatgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaattgtctc 126  Q
    |||||| || |||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||     
T  44873226 tacatgcggagctaaaattttaaagaaacaataatgcaaactatattaaaaataagaaataatattgtttgatacaatacattacaatgaaaatcgtctt 44873325  T
Q  127 ctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctat 194  Q
    ||||| |||||||||||||||| | |||| |||| |||| ||||| |||||||||||||| |||||||    
T  44873326 ctatccatttgttgaaaatgagttaaaataacatgattgctaattgttaaaagaacatctttttctat 44873393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 30 - 197
Target Start/End: Complemental strand, 7681525 - 7681358
Alignment:
Q  30 atgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaattgtctccta 129  Q
    ||||| || |||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || |||||    
T  7681525 atgtgtggttaaaatttcaaagaaataataatacaaactatattaaaaacaagaaataacattgtttgatacaatatattacaatgaaaatcgtttccta 7681426  T
Q  130 tctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    || ||||||||||||||  || ||||||||| |||| ||||| |||||||||||| ||||||||||||    
T  7681425 tccatttgttgaaaatgttctaaaatgacatcattgctaattgttaaaagaacatatctttctatata 7681358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 30 - 186
Target Start/End: Original strand, 29866106 - 29866264
Alignment:
Q  30 atgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaatt--gtctcc 127  Q
    ||||||||||||| ||| ||||||| ||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||   |||||    
T  29866106 atgtggggctaaacttttaaagaaaaaataatgcaaactatattataaataagaaataatattgtttgatacaatacattacaatgaaaatttcatctcc 29866205  T
Q  128 tatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatct 186  Q
     ||| |||||||||||||||||| ||||||||| ||| |||||||||||||||||||||    
T  29866206 gatccatttgttgaaaatgagctaaaatgacatcattattaatttttaaaagaacatct 29866264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 22 - 195
Target Start/End: Complemental strand, 32161561 - 32161390
Alignment:
Q  22 tttgatacatgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaatt 121  Q
    |||||||||||||||||||||||||   ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||  |||||     
T  32161561 tttgatacatgtggggctaaaattttggagaaaaaataatgcaaattatattaaaaataagaaataacattgtttgatacaatacattataactaaaatc 32161462  T
Q  122 gtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctata 195  Q
    ||||| ||||  ||||||||||||||| | |||| |||| | |  ||| | |||||||||||||||||| ||||    
T  32161461 gtctcatatc--tttgttgaaaatgagataaaataacatcaatactaaatgttaaaagaacatctctttttata 32161390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 22 - 181
Target Start/End: Complemental strand, 24557074 - 24556915
Alignment:
Q  22 tttgatacatgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaatt 121  Q
    ||||||| ||||| ||  ||||||||||||||||||||||  ||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||     
T  24557074 tttgatatatgtgtggtaaaaatttcaaagaaacaataatttaaattatattaaaaataataaataacattgtttgatacaatacattacaatgaaaatc 24556975  T
Q  122 gtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaa 181  Q
    |  | ||||| |||||||||||||||  | || || |||||||| ||||| |||||||||    
T  24556974 gatttctatccatttgttgaaaatgaagtaaattgtcattattgctaattgttaaaagaa 24556915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 56 - 197
Target Start/End: Complemental strand, 29841304 - 29841162
Alignment:
Q  56 aataatgcaaactatattaaaaagaagaaataacattgtttgatacaata-cattacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaa 154  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||| ||||  |||| ||||||||||||||| ||||||||||||||||||| | | |||    
T  29841304 aataatgcaaactatataaaaaataagaaataacattgtttgatataatataattataatgaaaattgtctcatatctatttgttgaaaatgggttaaaa 29841205  T
Q  155 tgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    | |||    || |||||||||||||||||| ||||||||||||    
T  29841204 taacaacggtgctaatttttaaaagaacatatctttctatata 29841162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 6978501 - 6978410
Alignment:
Q  22 tttgatacatgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaa 113  Q
    ||||||| ||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||| ||||||||||| ||||||||||||    
T  6978501 tttgatatatgtggggctaaattttcaaagaaacagtaatgtaaactatattaaaaataagaaataatattgtttgatataatacattacaa 6978410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 182
Target Start/End: Original strand, 2148338 - 2148481
Alignment:
Q  40 aaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatac-attacaatgaaaattgtctcctatctatttgt 138  Q
    |||||||||||||||| |||||||||| |||| |||||| |||||||||||||| ||||| |||||| ||||||||||||||  |||  |||  ||||||    
T  2148338 aaaatttcaaagaaactataatgcaaattatactaaaaataagaaataacattgattgatgcaatacaattacaatgaaaataatctattatacatttgt 2148437  T
Q  139 tgaaaatgagcttaaatgacattattgttaatttttaaaagaac 182  Q
    |||||| || || ||||  ||| |||| ||||||||||||||||    
T  2148438 tgaaaacgaactaaaatagcatcattgctaatttttaaaagaac 2148481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 59 - 147
Target Start/End: Original strand, 43421484 - 43421573
Alignment:
Q  59 aatgcaaactatattaaaaagaagaaataacattgtttgatacaatac-attacaatgaaaattgtctcctatctatttgttgaaaatga 147  Q
    |||||||||||||||||||| ||| |||||||||||||||| |||||| |||||||| ||||| |||| |||||||||||||||||||||    
T  43421484 aatgcaaactatattaaaaataagtaataacattgtttgatgcaatacaattacaataaaaatcgtcttctatctatttgttgaaaatga 43421573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 89 - 186
Target Start/End: Complemental strand, 11993774 - 11993677
Alignment:
Q  89 cattgtttgatacaatacattacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatct 186  Q
    |||||||||||||| ||||||||||||||| |  ||||||||  |||||||||||||||||| ||||||||| |||||||||| |||| || ||||||    
T  11993774 cattgtttgatacactacattacaatgaaagtcatctcctatacatttgttgaaaatgagctaaaatgacatcattgttaattgttaataggacatct 11993677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 197
Target Start/End: Complemental strand, 7388283 - 7388123
Alignment:
Q  38 ctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatac-attacaatgaaaattgtctcctatctattt 136  Q
    ||||||| ||| ||||| ||||||||| | ||||||||||| ||||| ||||||||||||||  ||||| |||||||| |||||||||| || || | ||    
T  7388283 ctaaaatatcagagaaaaaataatgcagattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaattgtcttctttccaatt 7388184  T
Q  137 gttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    |||||||| | ||| |||| | |  |||| |||||||||||| ||||| | ||||||||||    
T  7388183 gttgaaaacgtgctaaaataaaaacattgctaatttttaaaaaaacatttatttctatata 7388123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 89 - 168
Target Start/End: Complemental strand, 34697055 - 34696976
Alignment:
Q  89 cattgtttgatacaatacattacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaatgacattattgtta 168  Q
    ||||||||||||||||| |||||||||||||| ||||| |||| |||||||||||||||| | |||||||||| ||||||    
T  34697055 cattgtttgatacaatatattacaatgaaaatcgtctcatatccatttgttgaaaatgagataaaatgacatttttgtta 34696976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 35990914 - 35990865
Alignment:
Q  90 attgtttgatacaatacattacaatgaaaattgtctcctatctatttgtt 139  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  35990914 attgtttgatacaatacataacaatgaaaatcgtctcctatctatttgtt 35990865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 191
Target Start/End: Complemental strand, 45486287 - 45486203
Alignment:
Q  107 attacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttc 191  Q
    |||||||||||||| |||| | ||| ||||||||||||||||||  ||| |||| | || ||||| | |||||||||||||||||    
T  45486287 attacaatgaaaatcgtctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttc 45486203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 6802836 - 6802755
Alignment:
Q  116 aaaattgtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    |||||||||||||||  ||||||| |||||||  | ||||||| | |||| ||||| |||||| ||||||||||| ||||||    
T  6802836 aaaattgtctcctattcatttgttaaaaatgaagtaaaatgacttcattgctaattgttaaaataacatctctttttatata 6802755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 37042604 - 37042536
Alignment:
Q  39 taaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaataca 107  Q
    |||||||||||||||| ||||||| | | ||||||||||| |||||| || ||| ||| ||||||||||    
T  37042604 taaaatttcaaagaaaaaataatgtagattatattaaaaataagaaaaaatattatttaatacaataca 37042536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 6802872 - 6802833
Alignment:
Q  38 ctaaaatttcaaagaaacaataatgcaaactatattaaaa 77  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  6802872 ctaaaattagaaagaaacaataatgcaaactatattaaaa 6802833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 28 - 197
Target Start/End: Complemental strand, 34751241 - 34751072
Alignment:
Q  28 acatgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaattgtctcc 127  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||| |||||||||  ||||     
T  34751241 acatgtggggctaaaatttcaaagaaacaataatgcaaattatattaaaaataagaagtaacattgtttgatacaatacattaaaatgaaaatcatctcg 34751142  T
Q  128 tatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    | ||||||||||||||||||||| ||||||||| |||| ||||| ||||||  |||||||||| ||||||    
T  34751141 tgtctatttgttgaaaatgagctaaaatgacatcattgctaattgttaaaattacatctctttatatata 34751072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 27 - 197
Target Start/End: Original strand, 36744877 - 36745048
Alignment:
Q  27 tacatgtggggctaaaa-tttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaattgtct 125  Q
    ||||||||| ||||||| ||| ||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||| |||||||| ||||| ||||    
T  36744877 tacatgtggagctaaaaattttaaagaaacaataatgcaaactatattaaaagtaagaaataatattgtttgatacaataaattacaattaaaatcgtct 36744976  T
Q  126 cctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
      |||| |||||||||||||||||| ||||||||| |||| ||||| |||||||||||||||||||||||||    
T  36744977 tatatccatttgttgaaaatgagctaaaatgacatcattgctaattgttaaaagaacatctctttctatata 36745048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 30 - 197
Target Start/End: Original strand, 43144505 - 43144674
Alignment:
Q  30 atgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaatt--gtctcc 127  Q
    ||||||||||||| ||||||| ||| ||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||   |||||    
T  43144505 atgtggggctaaactttcaaaaaaaaaattatgcaaactatattataaataagaaataacattgtttgatacaatacattacaatgaaaatttcttctcc 43144604  T
Q  128 tatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
     ||| |||||||||||||||||| || ||||||  ||||||||| |||||||||||||| ||||||||||    
T  43144605 aatccatttgttgaaaatgagctaaagtgacatctttgttaattgttaaaagaacatctttttctatata 43144674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 30 - 184
Target Start/End: Original strand, 5568956 - 5569111
Alignment:
Q  30 atgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatac-attacaatgaaaattgtctcct 128  Q
    ||||| ||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||| |||||||||||||||||||| |    
T  5568956 atgtgtggctaaaatttaaaagaaaaaataatgcaaactatattaaaaataagaaataacattggttgatgcaatacaattacaatgaaaattgtctcgt 5569055  T
Q  129 atctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacat 184  Q
    ||| |||||||||||||||| | |||| |||  |||| ||||||||||||||||||    
T  5569056 atccatttgttgaaaatgagttaaaataacaacattgctaatttttaaaagaacat 5569111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 27 - 157
Target Start/End: Original strand, 26459633 - 26459763
Alignment:
Q  27 tacatgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaattgtctc 126  Q
    ||||||| | |||||||||||||||||||||| |||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||| || ||    
T  26459633 tacatgttgagctaaaatttcaaagaaacaattatgcaaaccatattaaaaataagaaagaacattgtttgatacaatacattacaatgaaaatcgtgtc 26459732  T
Q  127 ctatctatttgttgaaaatgagcttaaatga 157  Q
    ||||| |||||||||||||||||| ||||||    
T  26459733 ctatccatttgttgaaaatgagctaaaatga 26459763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 25819011 - 25819155
Alignment:
Q  22 tttgatacatgtggggctaaaatttcaaagaaacaata--atgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaa 119  Q
    |||| |||||||||||||||||||||||||||| ||||  ||| ||||||||||||||| | ||||||||||||||||| |||||||||||| |||||||    
T  25819011 tttggtacatgtggggctaaaatttcaaagaaaaaatataatgtaaactatattaaaaataggaaataacattgtttgaaacaatacattacgatgaaaa 25819110  T
Q  120 ttgtctcctatctatttgttgaaaatgagcttaaatgacattatt 164  Q
    |||||||||||| ||||||||||||| |||| |||| || |||||    
T  25819111 ttgtctcctatccatttgttgaaaataagctaaaataactttatt 25819155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 5069777 - 5069957
Alignment:
Q  22 tttgatacatgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatac----aatacattacaatgaa 117  Q
    |||| |||||||||||| |||| || ||||||||||||||| ||||||||||||||| ||||| ||| ||||||||||||    ||||| ||||||||||    
T  5069777 tttggtacatgtggggcaaaaaatttaaagaaacaataatgtaaactatattaaaaataagaagtaatattgtttgatacaattaatacgttacaatgaa 5069876  T
Q  118 aattgtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatatag 198  Q
    |||  |||| | ||||||||||||||||||| | |||||| || |||||||||| |||||| ||||||||||| |||||||    
T  5069877 aatcatctcatgtctatttgttgaaaatgagttaaaatgatatcattgttaattgttaaaataacatctctttatatatag 5069957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 89 - 197
Target Start/End: Complemental strand, 7607364 - 7607256
Alignment:
Q  89 cattgtttgatacaatacattacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctct 188  Q
    |||||||||||||||||||||||||| ||||| |||| ||||| |||||||||||||||||| ||||||||| |||||||||| |||| |||||||||||    
T  7607364 cattgtttgatacaatacattacaataaaaatcgtcttctatccatttgttgaaaatgagctaaaatgacatcattgttaattgttaatagaacatctct 7607265  T
Q  189 ttctatata 197  Q
    |||||||||    
T  7607264 ttctatata 7607256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 36 - 170
Target Start/End: Complemental strand, 33824890 - 33824755
Alignment:
Q  36 ggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatac-attacaatgaaaattgtctcctatctat 134  Q
    ||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||| || ||| |||||||||||||| |||||||||  ||    
T  33824890 ggctaaaattttaaagaaacaataatgcaaaatatattaaaaataagaaataacattgtttgatgcagtacaattacaatgaaaatcgtctcctattcat 33824791  T
Q  135 ttgttgaaaatgagcttaaatgacattattgttaat 170  Q
    |||||||||||||| | |||| |||| |||| ||||    
T  33824790 ttgttgaaaatgagttaaaataacatcattgctaat 33824755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 56 - 184
Target Start/End: Original strand, 39509128 - 39509257
Alignment:
Q  56 aataatgcaaactatattaaaaagaagaaataacattgtttgatacaataca-ttacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaa 154  Q
    ||||||||||| ||||| ||||| |||| ||||||||||||||||||||||| |||||||||||||||||| | ||| ||||||||||||||| || |||    
T  39509128 aataatgcaaattatatgaaaaataagatataacattgtttgatacaatacaattacaatgaaaattgtcttccatcaatttgttgaaaatgaactgaaa 39509227  T
Q  155 tgacattattgttaatttttaaaagaacat 184  Q
    | ||| | ||| | ||||||||||||||||    
T  39509228 taacaatgttgctgatttttaaaagaacat 39509257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 181
Target Start/End: Complemental strand, 980302 - 980159
Alignment:
Q  39 taaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatac-attacaatgaaaattgtctcctatctatttg 137  Q
    ||||||||  |||||| ||||||||||| ||||||||||| ||||||||||||||||||||  ||||| |||||||| |||||  |||  ||||||||||    
T  980302 taaaattttgaagaaataataatgcaaattatattaaaaataagaaataacattgtttgatgtaatacaattacaataaaaatcatctattatctatttg 980203  T
Q  138 ttgaaaatgagcttaaatgacattattgttaatttttaaaagaa 181  Q
    |||||||||  || |||| |||| |||||||| | |||||||||    
T  980202 ttgaaaatgtactaaaataacatcattgttaactattaaaagaa 980159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 22536894 - 22536966
Alignment:
Q  22 tttgatacatgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgt 94  Q
    ||||||||||||||| ||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  22536894 tttgatacatgtgggactaaatttttaaagaaacaataatgcaaactgtattaaaaagaagaaataacattgt 22536966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 36633998 - 36633907
Alignment:
Q  30 atgtggggctaaaatttcaaagaaacaataatgcaaac---tatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaa 119  Q
    ||||||||||||| |||||||||| ||||||| ||||    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  36633998 atgtggggctaaattttcaaagaa-caataatacaaataattatattaaaaataagtaataacattgtttgatacaatacattacaatgaaaa 36633907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 197
Target Start/End: Original strand, 29669996 - 29670085
Alignment:
Q  108 ttacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    |||||||||||||||||| |||   ||||||||||||| |||| |||| ||||||||| ||||| |||||||||||||| ||||||||||    
T  29669996 ttacaatgaaaattgtcttctaatcatttgttgaaaataagctaaaataacattattgataattgttaaaagaacatctttttctatata 29670085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 35676410 - 35676348
Alignment:
Q  36 ggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgat 99  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||| ||||    
T  35676410 ggctaaaatttcaaagaaa-aataatgcaaactatattaaaaataagaaataatattgtatgat 35676348  T

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Target: chr2 (Bit Score: 104; Significance: 8e-52; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 7700275 - 7700449
Alignment:
Q  22 tttgatacatgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaatt 121  Q
    ||||||| ||||| ||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||     
T  7700275 tttgatatatgtgtggctaaaatttcaaagaaacaataatgtaaactatataaaaaataagaaataacattgtttgatacaatacattgcaatgaaaatc 7700374  T
Q  122 gtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
     |||| |||  || ||||||||||||||| ||||||||| |||| ||||| |||||||||||| ||||||||||||    
T  7700375 atctcatattcatatgttgaaaatgagctaaaatgacatcattgctaattgttaaaagaacat-tctttctatata 7700449  T

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Target: chr2; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 32032910 - 32033085
Alignment:
Q  22 tttgatacatgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaatt 121  Q
    |||| |||||||| ||||||| ||| ||| |||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||     
T  32032910 tttggtacatgtgaggctaaatttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaatacattagaatgaaaatc 32033009  T
Q  122 gtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    ||| |||||| ||||||| |||||||| | ||||||||| | |  ||||| |||||||||||||||||||||||||    
T  32033010 gtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatata 32033085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 27447874 - 27447699
Alignment:
Q  22 tttgatacatgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatac-attacaatgaaaat 120  Q
    ||||||| ||||| ||||||||||||||||||| ||||||||| | ||| ||||||| ||||||||| ||||||||||  ||||| ||||||||||||||    
T  27447874 tttgatatatgtgtggctaaaatttcaaagaaaaaataatgcagattatgttaaaaataagaaataatattgtttgatgtaatacaattacaatgaaaat 27447775  T
Q  121 tgtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    |||||| ||||||||| ||| ||| ||||| |||| ||| ||| | ||| |||||||||||||| ||| ||||||||    
T  27447774 tgtctcatatctatttattggaaacgagctaaaataacaatatagctaa-ttttaaaagaacatttctctctatata 27447699  T

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Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 193
Target Start/End: Complemental strand, 18703817 - 18703657
Alignment:
Q  22 tttgatacatgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaatt 121  Q
    ||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||| ||||    |||||||||||||    
T  18703817 tttgatatacgtgtggctaaaatttcaaagaaacaataatgcaaactatattaaaaa-------taacattgtttgatgcaat----tacaatgaaaatt 18703729  T
Q  122 gtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttcta 193  Q
    |||||||||| ||||||| |||||||||  |||| | |  |||| ||||| |||||||||||||||||||||    
T  18703728 gtctcctatccatttgttaaaaatgagcaaaaataaaaacattgctaattgttaaaagaacatctctttcta 18703657  T

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Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 89 - 197
Target Start/End: Original strand, 34190029 - 34190137
Alignment:
Q  89 cattgtttgatacaatacattacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctct 188  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| || |||||| || |||| ||||| |||| |||||||||||    
T  34190029 cattgtttgatacaatacattacaatgaaaatcgtctcctatccatttgttgaaaatgaactaaaatgatatcattgctaattgttaatagaacatctct 34190128  T
Q  189 ttctatata 197  Q
    |||||||||    
T  34190129 ttctatata 34190137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 33 - 197
Target Start/End: Complemental strand, 34878799 - 34878634
Alignment:
Q  33 tggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacatt-gtttgatacaatacattacaatgaaaattgtctcctatc 131  Q
    |||||||||||||| ||||||||||||||| | |||||| |||||| ||||||||| ||| ||||||||||||  ||||||||  ||||| | || |||     
T  34878799 tggggctaaaattttaaagaaacaataatgaagactatactaaaaataagaaataagatttgtttgatacaatgaattacaatataaattctttcatatt 34878700  T
Q  132 tatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
     |||||||||||||||| | ||| ||| | |||||||||| |||||||||||| | ||||||||||    
T  34878699 catttgttgaaaatgagttaaaaagacgtcattgttaattgttaaaagaacatatatttctatata 34878634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 38 - 184
Target Start/End: Original strand, 38417741 - 38417888
Alignment:
Q  38 ctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatac-attacaatgaaaattgtctcctatctattt 136  Q
    ||||||||| ||||||| | |||||||| |||||||||||| |||||||||| ||| ||||| |||||| |||||| |||||||||||||||||| ||||    
T  38417741 ctaaaattttaaagaaaaactaatgcaagctatattaaaaataagaaataactttggttgatgcaatacaattacagtgaaaattgtctcctatccattt 38417840  T
Q  137 gttgaaaatgagcttaaatgacattattgttaatttttaaaagaacat 184  Q
    |||||||||||  | ||||  ||  |||||||| ||| ||||||||||    
T  38417841 gttgaaaatgatttaaaatagcaacattgttaactttcaaaagaacat 38417888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 11562101 - 11562195
Alignment:
Q  22 tttgatacatgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaa 119  Q
    ||||||||||||| ||||| | |||||||||||||||||||||   ||||||||||| ||||||||||||||||||||||| |||||||||| |||||    
T  11562101 tttgatacatgtgaggctagattttcaaagaaacaataatgca---tatattaaaaataagaaataacattgtttgatacagtacattacaacgaaaa 11562195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 197
Target Start/End: Complemental strand, 3357159 - 3357085
Alignment:
Q  122 gtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    |||||||||| |||||||||||||||| | ||||||||| |||| ||||| |||||| ||||||||||||||||||    
T  3357159 gtctcctatccatttgttgaaaatgagataaaatgacatcattgctaattgttaaaa-aacatctctttctatata 3357085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 16639351 - 16639293
Alignment:
Q  38 ctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgttt 96  Q
    ||||||||| |||||||||||||| |||||||||||||||| ||||||| |||||||||    
T  16639351 ctaaaattttaaagaaacaataatacaaactatattaaaaataagaaattacattgttt 16639293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 4075463 - 4075547
Alignment:
Q  107 attacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttc 191  Q
    |||||||||||||| |||| | ||| ||||||||||||||||||  ||| |||| | |  ||||| | |||||||||||||||||    
T  4075463 attacaatgaaaatcgtctgccatcaatttgttgaaaatgagctagaataacatcagtactaattgtgaaaagaacatctctttc 4075547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 6141404 - 6141444
Alignment:
Q  27 tacatgtggggctaaaatttcaaagaaacaataatgcaaac 67  Q
    ||||||||| |||||||||||||| ||| ||||||||||||    
T  6141404 tacatgtggagctaaaatttcaaataaataataatgcaaac 6141444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 56 - 198
Target Start/End: Original strand, 2158600 - 2158742
Alignment:
Q  56 aataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaat 155  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||    
T  2158600 aataatgcaaactatattaaaaataagaaataacattgtttgatacaatacattacaatgaaaatcgtctcctatccatttgttgaaaatgagctaaaat 2158699  T
Q  156 gacattattgttaatttttaaaagaacatctctttctatatag 198  Q
     | || |||| ||||| ||||||||| ||||||||||||||||    
T  2158700 aatatcattgctaattgttaaaagaagatctctttctatatag 2158742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 27 - 160
Target Start/End: Original strand, 4377177 - 4377310
Alignment:
Q  27 tacatgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaattgtctc 126  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||     
T  4377177 tacatgtggagctataatttcaaagaaacaataatgcaaactatattaaaaataagaaataatattgtttgatacaatacattacaatgaaaatcgtctt 4377276  T
Q  127 ctatctatttgttgaaaatgagcttaaatgacat 160  Q
     |||| |||||||||||||||| | |||||||||    
T  4377277 atatccatttgttgaaaatgagttaaaatgacat 4377310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 37 - 195
Target Start/End: Original strand, 2813940 - 2814098
Alignment:
Q  37 gctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaattgtctcctatctattt 136  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||| | ||||| |||| ||||    
T  2813940 gctaaaatttcaaagaaacaataatgcaaactatattaaaaatatgaaataaaattgtttgatacaatacattacaatgaaagtcgtctcatatccattt 2814039  T
Q  137 gttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctata 195  Q
    |||||||||||||| |||| |||| |||| | ||| |||||| | ||| | ||||||||    
T  2814040 gttgaaaatgagctaaaataacatcattgcttattgttaaaacatcatatatttctata 2814098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 27 - 160
Target Start/End: Original strand, 36247768 - 36247902
Alignment:
Q  27 tacatgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaag-aagaaataacattgtttgatacaatacattacaatgaaaattgtct 125  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||  ||||| | | ||||||||||||||||||||||||||||||| ||||    
T  36247768 tacatgtggagctaaaattttaaagaaacaataatgcaaactatattaaaaaataagaattcatattgtttgatacaatacattacaatgaaaatcgtct 36247867  T
Q  126 cctatctatttgttgaaaatgagcttaaatgacat 160  Q
    | |||| |||||||||||||||||| |||||||||    
T  36247868 catatccatttgttgaaaatgagctaaaatgacat 36247902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 36 - 197
Target Start/End: Original strand, 1111949 - 1112110
Alignment:
Q  36 ggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaataca-ttacaatgaaaattgtctcctatctat 134  Q
    |||||||||||||| |||| ||||||||||||| |||||| || |||||||||||||||||||| | ||||| ||||||| ||||||||||| |||| ||    
T  1111949 ggctaaaatttcaatgaaataataatgcaaact-tattaataataagaaataacattgtttgatgcgatacaattacaatcaaaattgtctcttatccat 1112047  T
Q  135 ttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    ||||||||||||| || |||| || |  ||||||||| |||||||||||| | ||||||||||    
T  1112048 ttgttgaaaatgatctaaaataacctcgttgttaattgttaaaagaacatgtatttctatata 1112110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 33517982 - 33518104
Alignment:
Q  39 taaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaattgtctcctatctatttgt 138  Q
    |||||||| |||||||||||||| |||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||  |||| ||||||    
T  33517982 taaaattttaaagaaacaataatacaaattatattaaaaataagaaataatattgtttgatacaatacattacaatgaaaatcgtcttatatccatttgt 33518081  T
Q  139 tg-aaaatgagcttaaatgacat 160  Q
     | |||||||||| |||||||||    
T  33518082 cgaaaaatgagctaaaatgacat 33518104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 50723279 - 50723219
Alignment:
Q  59 aatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaa 119  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  50723279 aatgcaaactatattaaaaataagaaataacattgtttgatataatacattacaatgaaaa 50723219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 52849898 - 52849787
Alignment:
Q  22 tttgatacatgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaatt 121  Q
    |||||||||| || ||||||||||| |||||||||||||| |||||||||||||||| ||        ||||||| |||||||| ||||||||||||||     
T  52849898 tttgatacatatgaggctaaaattttaaagaaacaataatacaaactatattaaaaataa--------attgtttaatacaatatattacaatgaaaatg 52849807  T
Q  122 gtctcctatctatttgttga 141  Q
    || ||||||| |||||||||    
T  52849806 gtttcctatcaatttgttga 52849787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 1758199 - 1758255
Alignment:
Q  16 tagatgtttgatacatgtggggctaaaatttcaaagaaacaataatgcaaactatat 72  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  1758199 tagatatttggtacatgtggggctaaaatttcaaagaaacaataatgtaaactatat 1758255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 197
Target Start/End: Original strand, 33518109 - 33518184
Alignment:
Q  122 gtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    |||| ||||| || ||||||||||||||| ||||||||| |||| ||||| |||||||||||||| ||||||||||    
T  33518109 gtcttctatccatctgttgaaaatgagctaaaatgacatcattgctaattgttaaaagaacatctatttctatata 33518184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 36247913 - 36247980
Alignment:
Q  128 tatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatat 196  Q
    |||| ||||||||||| |||||| ||||||||| |||||||||| |||||||||||| |||||||||||    
T  36247913 tatccatttgttgaaa-tgagctaaaatgacatcattgttaattgttaaaagaacatatctttctatat 36247980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 21161573 - 21161523
Alignment:
Q  16 tagatgtttgatacatgtggggctaaaatttcaaagaaacaataatgcaaa 66  Q
    ||||| |||||||||||||  | ||||||||||||||||||||||||||||    
T  21161573 tagatatttgatacatgtgaagttaaaatttcaaagaaacaataatgcaaa 21161523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 35390427 - 35390496
Alignment:
Q  36 ggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaata 105  Q
    |||||||||||||||||||  || ||| ||| |||| |||||| || ||||||||||||||||| |||||    
T  35390427 ggctaaaatttcaaagaaattatgatgtaaattatactaaaaataataaataacattgtttgatgcaata 35390496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 25023296 - 25023227
Alignment:
Q  127 ctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    ||||||||||||| |||||| ||| |||| | || |||| ||||| |||||||||||||| ||||||||||    
T  25023296 ctatctatttgtttaaaatgcgctaaaataa-atcattgctaattgttaaaagaacatctatttctatata 25023227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 51070340 - 51070394
Alignment:
Q  30 atgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaa 84  Q
    |||||||| ||||||||  || |||||||| |||||||||||||||||| |||||    
T  51070340 atgtggggttaaaattttgaaaaaacaatattgcaaactatattaaaaataagaa 51070394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 48 - 197
Target Start/End: Complemental strand, 461471 - 461322
Alignment:
Q  48 aaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaattgtctcctatctatttgttgaaaatga 147  Q
    ||||||| ||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  461471 aaagaaataataatgcaaactatattaaaaataagaagtaacattgtttggtacaatacattacaatgaaaatcgtctcctatctatttgttgaaaatga 461372  T
Q  148 gcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    ||| ||||||||| |||| ||||| |||||| ||||| ||||| ||||||    
T  461371 gctaaaatgacatcattgctaattgttaaaataacatatctttatatata 461322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 36 - 197
Target Start/End: Complemental strand, 30074786 - 30074623
Alignment:
Q  36 ggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaa--ttgtctcctatcta 133  Q
    ||||||| |||||||||||  |||||||||| ||||||||||| |||||| ||||| |||||||||||||||||||||| ||||  | |||||||||| |    
T  30074786 ggctaaattttcaaagaaaagataatgcaaattatattaaaaataagaaacaacatcgtttgatacaatacattacaatcaaaatctcgtctcctatcca 30074687  T
Q  134 tttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    |||||||||||| || | ||||||||| |||||||||| |||||||||||||||||||||||||    
T  30074686 tttgttgaaaataagttaaaatgacatcattgttaattgttaaaagaacatctctttctatata 30074623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 70 - 197
Target Start/End: Complemental strand, 2945519 - 2945390
Alignment:
Q  70 tattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaatt--gtctcctatctatttgttgaaaatgagcttaaatgacattattgtt 167  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||   |||||||||||||||||||||||||| || ||||||||| |||| |    
T  2945519 tattaaaaataagaaataacattgtttgatacaatacattacaataaaaatctcgtctcctatctatttgttgaaaatgacctaaaatgacatcattgct 2945420  T
Q  168 aatttttaaaagaacatctctttctatata 197  Q
    |||| ||||||||| ||| |||||||||||    
T  2945419 aattgttaaaagaaaatcactttctatata 2945390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 56 - 197
Target Start/End: Original strand, 25232916 - 25233058
Alignment:
Q  56 aataatgcaaactatattaaaaagaagaaataacattgtttgatacaata-cattacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaa 154  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||| | |||    
T  25232916 aataatgcaaactatatgaaaaataagaaataacattgtttgatacaatataattacaatgaaaattgtctcctatccatttgttgaaaatgagttaaaa 25233015  T
Q  155 tgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    | |||    || |||||||||||||||||| ||||| ||||||    
T  25233016 taacagcgctgctaatttttaaaagaacatttctttttatata 25233058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 38 - 197
Target Start/End: Complemental strand, 46090349 - 46090190
Alignment:
Q  38 ctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaattgtctcctatctatttg 137  Q
    |||| ||| |||||||||||| || |||||||||||||||| || ||||||||||||||| ||| |||||||||||||||||| ||||| |||  |||||    
T  46090349 ctaatattacaaagaaacaatgatacaaactatattaaaaataaaaaataacattgtttggtacgatacattacaatgaaaatcgtctcatattcatttg 46090250  T
Q  138 ttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    ||||||||||  | |||||||||  ||  ||||| |||||||||| ||||||||||||||    
T  46090249 ttgaaaatgaattaaaatgacatccttagtaattgttaaaagaacttctctttctatata 46090190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 33 - 197
Target Start/End: Original strand, 27080365 - 27080526
Alignment:
Q  33 tggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaattgtctcctatct 132  Q
    ||||| ||||||||||| ||||||||||   ||||||| ||||||| |||||||| |||||||||||||||||||  ||||| | ||| ||||||||| |    
T  27080365 tggggataaaatttcaatgaaacaataaattaaactatgttaaaaataagaaatatcattgtttgatacaataca--acaataacaatcgtctcctattt 27080462  T
Q  133 atttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    |||||||||||||||||| ||||||||| | || ||||| |||||||||||| ||||| ||||||    
T  27080463 atttgttgaaaatgagctaaaatgacatca-tgctaattgttaaaagaacatatctttttatata 27080526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 33 - 197
Target Start/End: Complemental strand, 27197936 - 27197775
Alignment:
Q  33 tggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaattgtctcctatct 132  Q
    ||||| ||||||||||| ||||||||||   ||||||| ||||||| |||||||| |||||||||||||||||||  ||||| | ||| ||||||||| |    
T  27197936 tggggataaaatttcaatgaaacaataaattaaactatgttaaaaataagaaatatcattgtttgatacaataca--acaataacaatcgtctcctattt 27197839  T
Q  133 atttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    |||||||||||||||||| ||||||||| | || ||||| |||||||||||| ||||| ||||||    
T  27197838 atttgttgaaaatgagctaaaatgacatca-tgctaattgttaaaagaacatatctttttatata 27197775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 34346960 - 34346839
Alignment:
Q  39 taaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaattgtctcctatctatttgt 138  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| | ||||||| ||||| |||| ||||||    
T  34346960 taaaatttcaaagaaacaataatgcaaactacattaaaaataagaaataacattgttttatacaatacattaaagtgaaaatcgtctcatatccatttgt 34346861  T
Q  139 tgaaaatgagcttaaatgacat 160  Q
     |||||||| |  |||||||||    
T  34346860 ggaaaatgaacgaaaatgacat 34346839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 52 - 197
Target Start/End: Complemental strand, 33941767 - 33941631
Alignment:
Q  52 aaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaattgtctcctatctatttgttgaaaatgagctt 151  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||         ||||||||| |||||||||||||||| |     
T  33941767 aaacaataatacaaactatattaaaaataagaaataacattgtttgataaaatacattacaa---------tctcctatcaatttgttgaaaatgagtta 33941677  T
Q  152 aaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    |||| |||| |||| ||||| |||||||||||| ||||||||||||    
T  33941676 aaataacatcattgctaattgttaaaagaacatttctttctatata 33941631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 89 - 197
Target Start/End: Complemental strand, 38300481 - 38300373
Alignment:
Q  89 cattgtttgatacaatacattacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctct 188  Q
    ||||||||||||||||  |||||||||||||| |||||||||| |||||||||||||||||| ||||||||  |||| ||||| |||| | ||||||| |    
T  38300481 cattgtttgatacaatgtattacaatgaaaatcgtctcctatccatttgttgaaaatgagctaaaatgacagcattgataattgttaataaaacatctat 38300382  T
Q  189 ttctatata 197  Q
    |||||||||    
T  38300381 ttctatata 38300373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 89 - 197
Target Start/End: Original strand, 24658426 - 24658533
Alignment:
Q  89 cattgtttgatacaatacattacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctct 188  Q
    |||| |||||||||||| |||||||||||||| || ||||||| |||||||||||||||| | ||||||||| |||| ||| | |||| |||||||||||    
T  24658426 cattctttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagttaaaatgacatcattgctaa-tgttaatagaacatctct 24658524  T
Q  189 ttctatata 197  Q
    |||||||||    
T  24658525 ttctatata 24658533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 42 - 148
Target Start/End: Complemental strand, 26824590 - 26824481
Alignment:
Q  42 aatttcaaagaaacaataat--gcaaactatattaaaaagaagaaataacattgtttgatacaataca-ttacaatgaaaattgtctcctatctatttgt 138  Q
    |||| |||||||||||||||  | |||||| |||||||| ||||||||| ||| |||||| ||||||| ||||||||||||| |||||||||| ||||||    
T  26824590 aattccaaagaaacaataatatgtaaactaaattaaaaataagaaataatattatttgatgcaatacaattacaatgaaaatcgtctcctatcgatttgt 26824491  T
Q  139 tgaaaatgag 148  Q
    ||||||||||    
T  26824490 tgaaaatgag 26824481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 165
Target Start/End: Complemental strand, 32222003 - 32221862
Alignment:
Q  27 tacatgtggggctaaaatttcaaagaa-acaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaa--ttgt 123  Q
    |||||||||||||||| ||| ||| || | ||||||| | | ||||||||||| |||||||||||||||||| ||||||| |||||| ||| ||  | ||    
T  32222003 tacatgtggggctaaatttttaaaaaataaaataatgtatattatattaaaaataagaaataacattgtttggtacaataaattacattgagaatctcgt 32221904  T
Q  124 ctcctatctatttgttgaaaatgagcttaaatgacattattg 165  Q
    |||||||| |||||||||||||||| | ||||||||| ||||    
T  32221903 ctcctatccatttgttgaaaatgagttaaaatgacatcattg 32221862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 39785484 - 39785594
Alignment:
Q  73 taaaaagaagaaataacattgtttgatacaataca-ttacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatt 171  Q
    |||||| |||||||||||||||||||| ||||||| ||||||||||||| |||| ||||| ||||||| |||||||||| |||| |||  |||| |||||    
T  39785484 taaaaataagaaataacattgtttgatgcaatacaattacaatgaaaatcgtctactatccatttgttaaaaatgagctaaaataacaacattgataatt 39785583  T
Q  172 tttaaaagaac 182  Q
     ||||||||||    
T  39785584 gttaaaagaac 39785594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 139
Target Start/End: Complemental strand, 16841146 - 16841044
Alignment:
Q  36 ggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaataca-ttacaatgaaaattgtctcctatctat 134  Q
    |||||||| || |||||||   |||||||||||||  |||||| ||||||||| ||| |||||| ||||||| |||||||||||||||||||||||||||    
T  16841146 ggctaaaactttaaagaaaagttaatgcaaactat--taaaaataagaaataatattttttgatgcaatacaattacaatgaaaattgtctcctatctat 16841049  T
Q  135 ttgtt 139  Q
    |||||    
T  16841048 ttgtt 16841044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 197
Target Start/End: Original strand, 1691663 - 1691758
Alignment:
Q  102 aatacattacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    |||| ||||||||| ||||  ||||||||| |||||||||||||||| | |||||| || |||||||||| |||| ||||||||||||| ||||||    
T  1691663 aatatattacaatgtaaatcatctcctatccatttgttgaaaatgagttaaaatgatatcattgttaattgttaatagaacatctctttatatata 1691758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 49143945 - 49144016
Alignment:
Q  26 atacatgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttg 97  Q
    |||||||||  |||||||||| ||||||| |||||| |||||||||||||||| ||||||||||||||||||    
T  49143945 atacatgtgttgctaaaattttaaagaaaaaataatacaaactatattaaaaataagaaataacattgtttg 49144016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 197
Target Start/End: Original strand, 36906214 - 36906369
Alignment:
Q  38 ctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaattgtctcctatctatttg 137  Q
    ||||||| | ||||||| ||| ||| | |||||| |||||| | |||||||||||||   |||||||    || ||||||||| |||| ||||    |||    
T  36906214 ctaaaatcttaaagaaataattatgaatactatactaaaaatacgaaataacattgtgcaatacaat----tagaatgaaaatcgtctactattcgattg 36906309  T
Q  138 ttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    |||||| |||| | |||| ||||||||||||||| | |||||||||||||||||||||||    
T  36906310 ttgaaagtgagttaaaataacattattgttaattgtcaaaagaacatctctttctatata 36906369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 197
Target Start/End: Original strand, 26787257 - 26787388
Alignment:
Q  67 ctatattaaaaagaagaaataacattgtttgatacaatac-attacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaatgacattattg 165  Q
    |||||||||| | ||||||||||||||||| || |||||| |||||||| |||||||| || |||  |||||||||||| ||| | |||| | |  || |    
T  26787257 ctatattaaagataagaaataacattgtttaatgcaatacaattacaatcaaaattgtgtcttattcatttgttgaaaacgagataaaataatagcatcg 26787356  T
Q  166 ttaatttttaaaagaacatctctttctatata 197  Q
     ||||||||||||||| || || |||||||||    
T  26787357 ctaatttttaaaagaatatttcattctatata 26787388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 7899428 - 7899482
Alignment:
Q  30 atgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaa 84  Q
    |||||||||||||||||  |||||||||||||||||| ||||||||||| |||||    
T  7899428 atgtggggctaaaattttgaagaaacaataatgcaaattatattaaaaataagaa 7899482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 26050108 - 26050162
Alignment:
Q  30 atgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaa 84  Q
    |||||||||||||||||  |||||||||||||||||| ||||||||||| |||||    
T  26050108 atgtggggctaaaattttgaagaaacaataatgcaaattatattaaaaataagaa 26050162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 26059467 - 26059521
Alignment:
Q  30 atgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaa 84  Q
    |||||||||||||||||  |||||||||||||||||| ||||||||||| |||||    
T  26059467 atgtggggctaaaattttgaagaaacaataatgcaaattatattaaaaataagaa 26059521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 191
Target Start/End: Complemental strand, 39781090 - 39781006
Alignment:
Q  107 attacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttc 191  Q
    |||||||||||||| |||| | ||| ||||||||||||||||||  ||| |||| | || ||||| | |||||||||||||||||    
T  39781090 attacaatgaaaatcgtctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttc 39781006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 40717008 - 40716908
Alignment:
Q  98 atacaataca-ttacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatat 196  Q
    |||||||||| ||||||| ||||||||||| |||| |||||||||||||||| | |||| ||| |  |  ||| |||||||||||||| ||||||| |||    
T  40717008 atacaatacaattacaataaaaattgtctcatatccatttgttgaaaatgaggtaaaataacagtggtactaacttttaaaagaacatttctttctgtat 40716909  T
Q  197 a 197  Q
    |    
T  40716908 a 40716908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 43266026 - 43265938
Alignment:
Q  107 attacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctata 195  Q
    ||||||||||||||  ||| | ||| ||||||||||||||||||  ||| |||| | || ||||| | |||||||||||||||||||||    
T  43266026 attacaatgaaaatcatctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttctata 43265938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 78
Target Start/End: Original strand, 18942679 - 18942708
Alignment:
Q  49 aagaaacaataatgcaaactatattaaaaa 78  Q
    ||||||||||||||||||||||||||||||    
T  18942679 aagaaacaataatgcaaactatattaaaaa 18942708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 25 - 197
Target Start/End: Original strand, 8064919 - 8065091
Alignment:
Q  25 gatacatgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaattgtc 124  Q
    |||| |||||||| ||||||   ||| || ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||    
T  8064919 gatatatgtggggttaaaataaaaaaaaaccaataatacaaactatattaaaaataagaaattacattgtttgatacaatacattacaatgaaaatcgtc 8065018  T
Q  125 tcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    ||||||| ||| ||||| |||||||  ||||||||| |||| ||||| |||||||||||||||||| ||||||    
T  8065019 tcctatccattggttgagaatgagcgaaaatgacatcattgctaattgttaaaagaacatctctttttatata 8065091  T

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Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 27464428 - 27464253
Alignment:
Q  22 tttgatacatgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaatt 121  Q
    |||| |||||||| ||||||||||||||| |||||| ||| ||||||||||| |||| |||||||||| |||||||||||||||||| ||||| ||||      
T  27464428 tttggtacatgtgaggctaaaatttcaaataaacaacaatacaaactatatttaaaataagaaataacgttgtttgatacaatacatcacaattaaaacc 27464329  T
Q  122 gtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    ||||  |||||||||||||||||||| || ||||||| | |||||||||| ||||||||| |||| ||||||||||    
T  27464328 gtctattatctatttgttgaaaatgaactaaaatgacgtcattgttaattgttaaaagaatatctttttctatata 27464253  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 59 - 160
Target Start/End: Complemental strand, 10781350 - 10781249
Alignment:
Q  59 aatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaatgac 158  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||| ||| |||||||    
T  10781350 aatgcaaactatattaaaaataagaaataatattgtttgatacaatacattacaatgaaaatcgtcttatatctatttgttgaaaatgtgctaaaatgac 10781251  T
Q  159 at 160  Q
    ||    
T  10781250 at 10781249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 57 - 197
Target Start/End: Complemental strand, 9539748 - 9539608
Alignment:
Q  57 ataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaatg 156  Q
    |||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||  |||| |||| |||||||||||||||||| ||||     
T  9539748 ataatgcaaactatattaaaaatatgaaataacatcgtttgatacaatacattacaatgaaaatcatctcttatccatttgttgaaaatgagctaaaata 9539649  T
Q  157 acattattgttaatttttaaaagaacatctctttctatata 197  Q
    | || |||| | ||| |||||||| ||| ||||| ||||||    
T  9539648 atatcattgcttattgttaaaagatcatatctttttatata 9539608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 125
Target Start/End: Original strand, 23347800 - 23347896
Alignment:
Q  30 atgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatac-attacaatgaaaattgtct 125  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||| ||||||  ||||||||||||||||||    
T  23347800 atgtgtggctaaaatttcaaataaacaataatgcaaactatattaaatataagaaataacattgtttgatgcaatacgcttacaatgaaaattgtct 23347896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 34912303 - 34912366
Alignment:
Q  34 ggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttg 97  Q
    ||||||||||||| |||||||||||||| ||| |||||||||||| ||||||||| ||| ||||    
T  34912303 ggggctaaaattttaaagaaacaataatacaagctatattaaaaataagaaataaaattatttg 34912366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 281198 - 281144
Alignment:
Q  30 atgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaa 84  Q
    |||||||||||||||||  |||||||||||||||||| ||||||||||| |||||    
T  281198 atgtggggctaaaattttgaagaaacaataatgcaaattatattaaaaataagaa 281144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 9516814 - 9516763
Alignment:
Q  33 tggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaa 84  Q
    ||||||||||||||  |||||||||||||||||| ||||||||||| |||||    
T  9516814 tggggctaaaattttgaagaaacaataatgcaaattatattaaaaataagaa 9516763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 9539796 - 9539762
Alignment:
Q  39 taaaatttcaaagaaacaataatgcaaactatatt 73  Q
    |||||||||||||||||||||||||||||||||||    
T  9539796 taaaatttcaaagaaacaataatgcaaactatatt 9539762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 43909427 - 43909373
Alignment:
Q  30 atgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaa 84  Q
    ||||||| |||||||||  |||||||||||||||||| ||||||||||| |||||    
T  43909427 atgtgggactaaaattttgaagaaacaataatgcaaattatattaaaaataagaa 43909373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 197
Target Start/End: Complemental strand, 10781234 - 10781165
Alignment:
Q  128 tatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    |||| |||||||||||||||| | |||||| ||  ||| ||||| |||||||||||| ||||||||||||    
T  10781234 tatccatttgttgaaaatgagttaaaatgaaatcgttgctaattgttaaaagaacatatctttctatata 10781165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 10781401 - 10781365
Alignment:
Q  37 gctaaaatttcaaagaaacaataatgcaaactatatt 73  Q
    |||||||||| ||||||||||||||||||||||||||    
T  10781401 gctaaaattttaaagaaacaataatgcaaactatatt 10781365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 23353435 - 23353499
Alignment:
Q  133 atttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    |||||||||||||||| | |||| |||| |||| ||| | |||||||||||| ||||||||||||    
T  23353435 atttgttgaaaatgagttaaaataacataattgctaaatattaaaagaacatttctttctatata 23353499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 39299315 - 39299269
Alignment:
Q  27 tacatgtggggctaaaatttcaaagaaacaataatgcaaactatatt 73  Q
    ||||||||| | |||||||| ||| ||||||||||||||||||||||    
T  39299315 tacatgtggagttaaaattttaaaaaaacaataatgcaaactatatt 39299269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 70
Target Start/End: Original strand, 42126356 - 42126386
Alignment:
Q  40 aaaatttcaaagaaacaataatgcaaactat 70  Q
    |||||||||||||||||||||||||||||||    
T  42126356 aaaatttcaaagaaacaataatgcaaactat 42126386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 35438947 - 35438898
Alignment:
Q  34 ggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaaga 83  Q
    |||||||||| ||  |||||||||||||||||| ||||||||||| ||||    
T  35438947 ggggctaaaaatttgaagaaacaataatgcaaattatattaaaaataaga 35438898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 191
Target Start/End: Complemental strand, 1017097 - 1017013
Alignment:
Q  107 attacaatgaaaattgtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttc 191  Q
    |||||||| ||||| |||| | ||| ||||||||| ||||||||  ||| |||| | || ||||| | |||||||||||||||||    
T  1017097 attacaataaaaatcgtctgccatccatttgttgagaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttc 1017013  T

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Target: scaffold0311 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 1015 - 838
Alignment:
Q  16 tagatgtttgatacatgtggggctaaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatacattacaatg 115  Q
    ||||| ||||||| | ||| | ||||||||||||||||||||| | | |||||||| |||||| |||||||||||||||   |||||    |||||||||    
T  1015 tagatatttgatatacgtgtgactaaaatttcaaagaaacaatgacgaaaactatactaaaaataagaaataacattgtgcaataca----attacaatg 920  T
Q  116 aaaattgtctcctatctatttgttgaaaatgagcttaaatgacattattgttaatttttaaaagaacatctctttctatata 197  Q
    ||||| |||| ||||    |||||||||||||||| || | |||| |||| ||||| | |||||||||| ||||||||||||    
T  919 aaaatcgtctactattcgattgttgaaaatgagctaaactaacatcattgctaattgtcaaaagaacatatctttctatata 838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 39 - 143
Target Start/End: Original strand, 9625 - 9730
Alignment:
Q  39 taaaatttcaaagaaacaataatgcaaactatattaaaaagaagaaataacattgtttgatacaatac-attacaatgaaaattgtctcctatctatttg 137  Q
    |||||||||||||||| |||||||||||| |||||||||| |  |||||||| |||||||| || | | |||||||| ||||||||||  |||  |||||    
T  9625 taaaatttcaaagaaaaaataatgcaaacaatattaaaaatataaaataacaatgtttgatgcagtgcaattacaataaaaattgtcttatattgatttg 9724  T
Q  138 ttgaaa 143  Q
    ||||||    
T  9725 ttgaaa 9730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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