View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12858_high_1 (Length: 394)

Name: NF12858_high_1
Description: NF12858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12858_high_1
NF12858_high_1
[»] chr7 (10 HSPs)
chr7 (149-390)||(22901154-22901407)
chr7 (149-390)||(27761397-27761649)
chr7 (149-390)||(27756846-27757098)
chr7 (155-390)||(47419483-47419729)
chr7 (128-335)||(7466485-7466690)
chr7 (17-148)||(45955181-45955312)
chr7 (149-390)||(7939989-7940240)
chr7 (149-390)||(7944542-7944793)
chr7 (149-335)||(35705634-35705830)
chr7 (234-331)||(733632-733729)
[»] chr4 (16 HSPs)
chr4 (149-390)||(31670090-31670341)
chr4 (156-335)||(43683636-43683813)
chr4 (149-335)||(50627904-50628087)
chr4 (144-335)||(10317025-10317225)
chr4 (149-335)||(8892582-8892778)
chr4 (149-335)||(53722007-53722202)
chr4 (149-390)||(44147023-44147273)
chr4 (149-390)||(44151558-44151808)
chr4 (148-335)||(27186141-27186341)
chr4 (149-390)||(3770842-3771093)
chr4 (177-335)||(35842797-35842942)
chr4 (149-209)||(31359151-31359210)
chr4 (149-209)||(41884925-41884984)
chr4 (146-209)||(31354675-31354737)
chr4 (149-209)||(49274609-49274668)
chr4 (264-334)||(53785970-53786039)
[»] chr1 (7 HSPs)
chr1 (149-390)||(26311522-26311760)
chr1 (149-390)||(26316013-26316251)
chr1 (149-379)||(39793831-39794070)
chr1 (149-390)||(16588383-16588635)
chr1 (149-335)||(43591783-43591978)
chr1 (149-239)||(10504436-10504524)
chr1 (264-296)||(41879945-41879977)
[»] chr3 (14 HSPs)
chr3 (149-390)||(21847109-21847362)
chr3 (149-390)||(21850199-21850452)
chr3 (148-335)||(9697585-9697783)
chr3 (149-335)||(11004365-11004560)
chr3 (149-335)||(43547723-43547920)
chr3 (149-335)||(9105275-9105470)
chr3 (149-390)||(54171829-54172081)
chr3 (149-239)||(54167411-54167501)
chr3 (231-335)||(43554660-43554764)
chr3 (149-228)||(43554292-43554371)
chr3 (149-239)||(39399191-39399279)
chr3 (264-329)||(755955-756020)
chr3 (341-390)||(54167249-54167299)
chr3 (260-293)||(54167344-54167377)
[»] chr8 (16 HSPs)
chr8 (148-390)||(28644561-28644813)
chr8 (149-390)||(30410235-30410486)
chr8 (149-379)||(38757003-38757228)
chr8 (149-335)||(42234656-42234851)
chr8 (149-335)||(33071918-33072113)
chr8 (149-390)||(30405726-30405960)
chr8 (149-390)||(197591-197841)
chr8 (149-390)||(202109-202359)
chr8 (149-390)||(312428-312678)
chr8 (149-390)||(316946-317196)
chr8 (149-390)||(43807391-43807640)
chr8 (149-390)||(43811950-43812199)
chr8 (149-228)||(41945339-41945416)
chr8 (149-239)||(41949802-41949890)
chr8 (264-318)||(27435169-27435223)
chr8 (178-231)||(27435261-27435314)
[»] chr6 (9 HSPs)
chr6 (149-379)||(8315421-8315661)
chr6 (149-390)||(27574643-27574884)
chr6 (149-390)||(27552014-27552267)
chr6 (149-379)||(8319960-8320199)
chr6 (149-335)||(17886810-17887000)
chr6 (149-335)||(17096236-17096431)
chr6 (148-380)||(17779913-17780156)
chr6 (149-335)||(17895685-17895881)
chr6 (147-335)||(14531749-14531947)
[»] chr2 (9 HSPs)
chr2 (149-388)||(6463345-6463583)
chr2 (149-390)||(8055392-8055643)
chr2 (149-390)||(8050839-8051090)
chr2 (148-335)||(12999426-12999623)
chr2 (149-390)||(36670503-36670755)
chr2 (149-390)||(36675051-36675303)
chr2 (149-302)||(13270980-13271131)
chr2 (149-239)||(35950507-35950595)
chr2 (149-207)||(41093824-41093881)
[»] chr5 (22 HSPs)
chr5 (149-390)||(30695293-30695545)
chr5 (149-390)||(37682036-37682277)
chr5 (149-390)||(40367517-40367757)
chr5 (149-335)||(36632314-36632497)
chr5 (149-390)||(37658732-37658973)
chr5 (148-335)||(32485947-32486144)
chr5 (149-335)||(26336767-26336964)
chr5 (149-335)||(19502307-19502504)
chr5 (149-390)||(7099280-7099531)
chr5 (149-390)||(7103849-7104100)
chr5 (149-390)||(16794108-16794360)
chr5 (149-390)||(16798669-16798921)
chr5 (148-293)||(12018730-12018888)
chr5 (149-293)||(12023289-12023446)
chr5 (149-390)||(40371655-40371892)
chr5 (231-321)||(20830304-20830394)
chr5 (149-314)||(43384945-43385126)
chr5 (149-239)||(10277204-10277292)
chr5 (149-239)||(10274546-10274634)
chr5 (340-390)||(12018932-12018984)
chr5 (340-390)||(12023490-12023542)
chr5 (264-296)||(5733082-5733114)
[»] scaffold0044 (2 HSPs)
scaffold0044 (149-390)||(44771-45022)
scaffold0044 (149-390)||(49351-49602)
[»] scaffold0440 (2 HSPs)
scaffold0440 (149-293)||(2980-3137)
scaffold0440 (149-390)||(7506-7757)


Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 149 - 390
Target Start/End: Original strand, 22901154 - 22901407
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttc-------- 240  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  22901154 tgttagtttgttttaattaaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 22901253  T
Q  241 ---gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatattttgt 337  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  22901254 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttgt 22901353  T
Q  338 atgtagaatcaataaagatca-tttacaatttcatcataactttcttctctctc 390  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  22901354 atgtagaatcaataaagatcattttacaaattcatcataactttcttctctctc 22901407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 149 - 390
Target Start/End: Original strand, 27761397 - 27761649
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttc-------- 240  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||             
T  27761397 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tctgttttagtttgttatgaagtttgttacaagtttg 27761494  T
Q  241 ---gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtata-ttttg 336  Q
       |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| | ||||     
T  27761495 ttagaggtttgtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttta 27761594  T
Q  337 tatgtagaatcaataaagatcatttacaa-tttcatcataactttcttctctctc 390  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27761595 tatgtagaatcaataaagatcatttacaattttcatcataactttcttctctctc 27761649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 149 - 390
Target Start/End: Original strand, 27756846 - 27757098
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttc-------- 240  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||  | ||||||||||||||||||||||||||             
T  27756846 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcgcat-tctgttttagtttgttatgaagtttgttacaagtttg 27756943  T
Q  241 ---gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtata-ttttg 336  Q
       |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| | ||||     
T  27756944 ttagaggtttgtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttta 27757043  T
Q  337 tatgtagaatcaataaagatcatttacaa-tttcatcataactttcttctctctc 390  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27757044 tatgtagaatcaataaagatcatttacaattttcatcataactttcttctctctc 27757098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 155 - 390
Target Start/End: Complemental strand, 47419729 - 47419483
Alignment:
Q  155 tttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttc-----------gag 243  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||            |||    
T  47419729 tttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tttgttttagtttgttatgaagtttgttacaagtttcttagag 47419632  T
Q  244 gttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatatttt-gtatgta 342  Q
    |||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  47419631 gttagcagataatatctagagtttgttacattgtttgtgtttcaagcaacttagctagacattgtatataagctacctcctttgtatattttcgtatgta 47419532  T
Q  343 gaatcaataaagatcatttacaatttcatcataacttt-cttctctctc 390  Q
    ||||||||||| |||| ||||||||||||||||| ||| ||||||||||    
T  47419531 gaatcaataaaaatcaattacaatttcatcataattttacttctctctc 47419483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 128 - 335
Target Start/End: Complemental strand, 7466690 - 7466485
Alignment:
Q  128 tgaaattaattatgaagtttgtgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgtt 227  Q
    |||||||||  |||| || | |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||  ||||||||||||||||    
T  7466690 tgaaattaagaatgatgtatttgttagtttgttttaattcaagtttagttttagtgataatcacaatcaatgattaatcacat-tttgttttagtttgtt 7466592  T
Q  228 atgaagtttgttcgaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttg 327  Q
    |  ||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7466591 ac-aagtttgttagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataagctacctcctttg 7466493  T
Q  328 tatatttt 335  Q
    ||||||||    
T  7466492 tatatttt 7466485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 17 - 148
Target Start/End: Original strand, 45955181 - 45955312
Alignment:
Q  17 agtcttgctccattgaaatcagaaagagaagaagctaaaggagggaaagatagttgattctgttggagtgccaccaatcttgccatgtttggttgtgagg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45955181 agtcttgctccattgaaatcagaaagagaagaagctaaaggagggaaagatagttgattctgttggagtgccaccaatcttgccatgtttggttgtgagg 45955280  T
Q  117 tgtgtataggatgaaattaattatgaagtttg 148  Q
    ||||||||||||||||||||||||||||||||    
T  45955281 tgtgtataggatgaaattaattatgaagtttg 45955312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 149 - 390
Target Start/End: Complemental strand, 7940240 - 7939989
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtt-----------tg 237  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||    
T  7940240 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7940141  T
Q  238 ttcgaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc-ttct-ttgtatatt 333  Q
    || |||||||||| ||||| |   |||||||||||||||||||||||||||||||||| |   ||||| |||||||||||  ||| || | ||||| |||    
T  7940140 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataag--accattatcttgtacatt 7940046  T
Q  334 ttgtatgtagaatcaataaagatcatttacaatttcatcataactttcttctctctc 390  Q
        |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7940045 cataatgtagaatcaataaagatcatttacaaattcatcataactttcttctctctc 7939989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 149 - 390
Target Start/End: Complemental strand, 7944793 - 7944542
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtt-----------tg 237  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||    
T  7944793 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7944694  T
Q  238 ttcgaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc-ttct-ttgtatatt 333  Q
    || |||||||||| ||||| |   |||||||||||||||||||||||||||||||||| |   ||||| |||||||||||  ||| || | ||||| |||    
T  7944693 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataag--accattatcttgtacatt 7944599  T
Q  334 ttgtatgtagaatcaataaagatcatttacaatttcatcataactttcttctctctc 390  Q
        |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7944598 cataatgtagaatcaataaagatcatttacaaattcatcataactttcttctctctc 7944542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 149 - 335
Target Start/End: Original strand, 35705634 - 35705830
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgtt-atg-----------aagttt 236  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||  |||||||||||||||| |||           ||||||    
T  35705634 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtgattaatcacat-tttgttttagtttgtttatggagtttgttacaagttt 35705731  T
Q  237 gttcgaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc-ttctttgtatatttt 335  Q
    ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||    
T  35705732 gttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaac-cagctagacattgtatataagctacctttctttgtatatttt 35705830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 234 - 331
Target Start/End: Complemental strand, 733729 - 733632
Alignment:
Q  234 tttgttcgaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtata 331  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  733729 tttgttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcgagcaacttagctagacattgtatataagctacctcctttgtata 733632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 149 - 390
Target Start/End: Original strand, 31670090 - 31670341
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttc-------- 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||             
T  31670090 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcaca-gtttgttttagtttgttatgaagtttgttacaagtttg 31670188  T
Q  241 ---gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatattttgt 337  Q
       ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  31670189 ttagaggttagcagataagatctagagtttgttacattgcttctgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttga 31670288  T
Q  338 atgtagaatcaataaagatcatttacaatttcatcataactttcttctctctc 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31670289 atgtagaatcaataaagatcatttacaatttcatcataactttcttctctctc 31670341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 156 - 335
Target Start/End: Complemental strand, 43683813 - 43683636
Alignment:
Q  156 ttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttcgaggttagcagataa 255  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||| |||||||||| ||||    
T  43683813 ttgttttaattcaagttta-ttttagtgataatcacaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgttagaggttagcaaataa 43683716  T
Q  256 gatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatatttt 335  Q
    ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  43683715 gatatagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataagctacatcctttgtatatttt 43683636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 149 - 335
Target Start/End: Complemental strand, 50628087 - 50627904
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttcgaggttag 248  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||   ||| |||||||||||||  ||||||||| ||||||||    
T  50628087 tgttagtttgttttaattcaagattagttttagtg-taatcacaatcagtgattaatcactttttt-ttttagtttgttac-aagtttgttagaggttag 50627991  T
Q  249 cagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatatttt 335  Q
    || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  50627990 caaataagatctagagtttgttacattgcttgtacttcaagcaacttagctagacattgtatataagctacctcctttatatatttt 50627904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 144 - 335
Target Start/End: Complemental strand, 10317225 - 10317025
Alignment:
Q  144 gtttgtgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttc--- 240  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||  |||||| |||||||||||||||||||||        
T  10317225 gtttgtgttagtttgttttaattcaagtttagttt-agttataatcacaatcagtgattaatcacac-tttgttgtagtttgttatgaagtttgttacaa 10317128  T
Q  241 --------gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatat 332  Q
            |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  10317127 gtttgttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatat 10317028  T
Q  333 ttt 335  Q
    |||    
T  10317027 ttt 10317025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 149 - 335
Target Start/End: Complemental strand, 8892778 - 8892582
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaag-----------tttg 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||           ||||    
T  8892778 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcac-attttgttttagtttgttatgaagtttgttacaaatttg 8892680  T
Q  238 ttcgaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatatttt 335  Q
    || ||| |||||| ||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  8892679 ttagagattagcaaataagatatagagtttgttacatcgcttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 8892582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 149 - 335
Target Start/End: Original strand, 53722007 - 53722202
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttc-------- 240  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||             
T  53722007 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tttgttttagtttgttatgaagtttgttacaagtttg 53722104  T
Q  241 ---gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatatttt 335  Q
       |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||| |||||    
T  53722105 ttagaggctagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctatatattgtatataagctacctcctttgtacatttt 53722202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 149 - 390
Target Start/End: Original strand, 44147023 - 44147273
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatg-----------aagtttg 237  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||    
T  44147023 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 44147122  T
Q  238 ttcgaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc-ttct-ttgtatatt 333  Q
    || |||||||||| ||||| |   |||||||||||||||||||||||||||||||||| |   ||||| |||||||||||  ||| || | ||||| | |    
T  44147123 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataag--accattatcttgtaca-t 44147216  T
Q  334 ttgtatgtagaatcaataaagatcatttacaatttcatcataactttcttctctctc 390  Q
    |  || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44147217 tcataagtagaatcaataaagatcatttacaatttcatcataactttcttctctctc 44147273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 149 - 390
Target Start/End: Original strand, 44151558 - 44151808
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatg-----------aagtttg 237  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||    
T  44151558 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 44151657  T
Q  238 ttcgaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc-ttct-ttgtatatt 333  Q
    || |||||||||| ||||| |   |||||||||||||||||||||||||||||||||| |   ||||| |||||||||||  ||| || | ||||| | |    
T  44151658 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataag--accattatcttgtaca-t 44151751  T
Q  334 ttgtatgtagaatcaataaagatcatttacaatttcatcataactttcttctctctc 390  Q
    |  || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44151752 tcataagtagaatcaataaagatcatttacaatttcatcataactttcttctctctc 44151808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 148 - 335
Target Start/End: Original strand, 27186141 - 27186341
Alignment:
Q  148 gtgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtt-tgttttagttt-gttatgaagtttgttc----- 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||  || | ||||||||| |||||||||||||||          
T  27186141 gtgttagtttgttttaattcaagtttagttttagtgataatcacaattagtgattaatcacattttgttttttagttttgttatgaagtttgttacaagt 27186240  T
Q  241 ------gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatattt 334  Q
          |||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||    
T  27186241 ttgttagaggttagcaaataagatctagagtttgtaacattgcttgtgcttcaagaaacttagctagacattgtatataagctgcctcctttgtatattt 27186340  T
Q  335 t 335  Q
    |    
T  27186341 t 27186341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 149 - 390
Target Start/End: Original strand, 3770842 - 3771093
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatg-----------aagtttg 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||    
T  3770842 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 3770941  T
Q  238 ttcgaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc-ttct-ttgtatatt 333  Q
    || |||||||||| ||||| |   |||||||||||||||||||||||||||||||||| |   ||||| |||||||||||  ||| || | ||||| | |    
T  3770942 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataag--accattatcttgtaca-t 3771035  T
Q  334 ttgtatgtagaatcaataaagatcatttacaa-tttcatcataactttcttctctctc 390  Q
    |   | | |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3771036 tcaaaagaagaatcaataaagatcatttacaattttcatcataactttcttctctctc 3771093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 177 - 335
Target Start/End: Original strand, 35842797 - 35842942
Alignment:
Q  177 tttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttcgaggttagcagataagatctagagtttgttacattg 276  Q
    ||||||||||||||||||||||| |||||||||  ||||||||||| |||||            |||||||||| |||||||||||||||||||||| ||    
T  35842797 tttagtgataatcacaatcagtgattaatcacac-tttgttttagtatgtta------------gaggttagcaaataagatctagagtttgttacaatg 35842883  T
Q  277 cttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatatttt 335  Q
    ||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||    
T  35842884 cttgtgcttcaagcaacttagttagacattgtatataaactacctcctttgtatatttt 35842942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 31359151 - 31359210
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcaca 209  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||    
T  31359151 tgttagtttgttttaattcaagtttag-tttaatgataatcacaattagtggttaatcaca 31359210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 41884925 - 41884984
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcaca 209  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  41884925 tgttggtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcaca 41884984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 31354675 - 31354737
Alignment:
Q  146 ttgtgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcaca 209  Q
    ||||||||||||||||||||| |||||||| |||||||||||| ||||| ||||||||||||||    
T  31354675 ttgtgttagtttgttttaatttaagtttag-tttagtgataattacaattagtggttaatcaca 31354737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 49274668 - 49274609
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcaca 209  Q
    ||||||||||||||||||||||||||| ||||||||| |||| ||| ||||||||||||||    
T  49274668 tgttagtttgttttaattcaagtttag-tttagtgatgatcataattagtggttaatcaca 49274609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 334
Target Start/End: Original strand, 53785970 - 53786039
Alignment:
Q  264 gtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatattt 334  Q
    ||||||||||| |||||||||||||||||| || ||||   | |||||||||||||| |||||||| ||||    
T  53785970 gtttgttacatagcttgtgcttcaagcaacctaactagttctagtatataagctacc-tctttgtacattt 53786039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 149 - 390
Target Start/End: Original strand, 26311522 - 26311760
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttcgaggttag 248  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | |||||||||||||||  ||||||||| ||||||||    
T  26311522 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tctgttttagtttgttac-aagtttgttagaggttag 26311618  T
Q  249 cagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatattttgtatgtagaatca 348  Q
     |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| | |||||||||||||||||| |||||||    
T  26311619 tagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctacttcctttgtatattttgtatgcagaatca 26311718  T
Q  349 ataaagatcatttacaatttcatcataactttcttctctctc 390  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  26311719 ataaagatcaattacaatttcatcataactttcttctctctc 26311760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 149 - 390
Target Start/End: Original strand, 26316013 - 26316251
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttcgaggttag 248  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | |||||||||||||||  ||||||||| ||||||||    
T  26316013 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tctgttttagtttgttac-aagtttgttagaggttag 26316109  T
Q  249 cagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatattttgtatgtagaatca 348  Q
     |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| | |||||||||||||||||| |||||||    
T  26316110 tagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctacttcctttgtatattttgtatgcagaatca 26316209  T
Q  349 ataaagatcatttacaatttcatcataactttcttctctctc 390  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  26316210 ataaagatcaattacaatttcatcataactttcttctctctc 26316251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 149 - 379
Target Start/End: Original strand, 39793831 - 39794070
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttc-------- 240  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||  | ||||||||||||||||||||||||||             
T  39793831 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatctcat-tctgttttagtttgttatgaagtttgttacaagtttg 39793928  T
Q  241 ---gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatattttgt 337  Q
       |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||  |    
T  39793929 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttcat 39794028  T
Q  338 atgtagaatcaataaagatcatttacaatttcatcataactt 379  Q
    ||||||||||||||||||||| ||||| ||||||||||||||    
T  39794029 atgtagaatcaataaagatcaattacattttcatcataactt 39794070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 149 - 390
Target Start/End: Complemental strand, 16588635 - 16588383
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttc-------- 240  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||             
T  16588635 tgttagtttgttttaattcaagtttagttt-agtgataatcacaataagtggttaatcacat-tttgttttagtttgttatgaagtttgttacaagtttg 16588538  T
Q  241 ---gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtata-ttttg 336  Q
       ||||||| || ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  16588537 ttagaggttatcatataagatctagagtttgttacattgcttgtgttttaagcaacttagctagacattgtatataagctacctcctttgtatatttttg 16588438  T
Q  337 tatgtagaatcaataaagatcatttacaatttcatcataac-tttcttctctctc 390  Q
    |||| |||||||||||  |||| |||||||||||||||||| |||||||||||||    
T  16588437 tatggagaatcaataagaatcaattacaatttcatcataacttttcttctctctc 16588383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 149 - 335
Target Start/End: Complemental strand, 43591978 - 43591783
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttc-------- 240  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||  ||| ||||||||||||||||||||||||             
T  43591978 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtgattaatcgcac-tttattttagtttgttatgaagtttgttacaatattg 43591881  T
Q  241 ---gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatatttt 335  Q
       |||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  43591880 ttagaggttagcaaataaaatctagagtttgttacattgcttgtgcttcaagcaacttggctagacattgtatataagctacctcctttgtatatttt 43591783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 149 - 239
Target Start/End: Original strand, 10504436 - 10504524
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgtt 239  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||| | || | || ||||||||||||| ||||||    
T  10504436 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtgattaatcac-atttagattcagtttgttatgaattttgtt 10504524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 296
Target Start/End: Original strand, 41879945 - 41879977
Alignment:
Q  264 gtttgttacattgcttgtgcttcaagcaactta 296  Q
    ||||||||| |||||||||||||||||||||||    
T  41879945 gtttgttactttgcttgtgcttcaagcaactta 41879977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 173; Significance: 6e-93; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 149 - 390
Target Start/End: Original strand, 21847109 - 21847362
Alignment:
Q  149 tgttagtttgtttt-aattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttc------- 240  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||            
T  21847109 tgttagtttgtttttaattcaagtttagttttagtgataatcacaatcagtggttaatcaca-gtttgttttagtttgttatgaagtttgttacaagttt 21847207  T
Q  241 ----gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtata-tttt 335  Q
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| | ||||    
T  21847208 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt 21847307  T
Q  336 gtatgtagaatcaataaagatcatttacaatttcatcataactttcttctctctc 390  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21847308 gtatatagaatcaataaagatcatttacaatttcatcataactttcttctctctc 21847362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 149 - 390
Target Start/End: Original strand, 21850199 - 21850452
Alignment:
Q  149 tgttagtttgtttt-aattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttc------- 240  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||            
T  21850199 tgttagtttgtttttaattcaagtttagttttagtgataatcacaatcagtggttaatcaca-gtttgttttagtttgttatgaagtttgttacaagttt 21850297  T
Q  241 ----gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtata-tttt 335  Q
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| | ||||    
T  21850298 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt 21850397  T
Q  336 gtatgtagaatcaataaagatcatttacaatttcatcataactttcttctctctc 390  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21850398 gtatatagaatcaataaagatcatttacaatttcatcataactttcttctctctc 21850452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 148 - 335
Target Start/End: Original strand, 9697585 - 9697783
Alignment:
Q  148 gtgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttc------- 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||  ||  ||||||||||||||||||||||||            
T  9697585 gtgttagtttgttttaattcaagtttagttttagtgataatcacaattagtgattaatcacattttgtttttagtttgttatgaagtttgttacaagttt 9697684  T
Q  241 ----gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatatttt 335  Q
        |||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||    
T  9697685 gttagaggttagcaaataagatctagagtttgtaacattgcttgtgcttcaagaaacttagctagacattgtatataagctgcctcctttgtatatttt 9697783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 149 - 335
Target Start/End: Complemental strand, 11004560 - 11004365
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaag-----------tttg 237  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||  |||||||||| |||||||||||           ||||    
T  11004560 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtgaataatcacat-tttgttttagcttgttatgaagattgttacaagtttg 11004463  T
Q  238 ttcgaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatatttt 335  Q
    || |||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  11004462 ttagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacctagctagacattgtatataagctacctcctttgtatatttt 11004365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 149 - 335
Target Start/End: Original strand, 43547723 - 43547920
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttc-------- 240  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||  ||  ||||||||||||||||||||||||             
T  43547723 tgttagcttgttttaattcaagtttagttttagtgataatcacaatcagtgattaattacattttgtttttagtttgttatgaagtttgttacaagtttg 43547822  T
Q  241 ---gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatatttt 335  Q
       ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||    
T  43547823 ttagaggttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagcaagacattgtatataagctatctcctttgtatatttt 43547920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 149 - 335
Target Start/End: Original strand, 9105275 - 9105470
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagt-----------ttg 237  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||  |||| ||||||||||||||||||           |||    
T  9105275 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacat-tttgctttagtttgttatgaagtatgttacaagtttg 9105372  T
Q  238 ttcgaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatatttt 335  Q
    || ||||||| || |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||| |||||||||||||    
T  9105373 ttagaggttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaacctaactagacattgtatatgagctacctcctttgtatatttt 9105470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 149 - 390
Target Start/End: Complemental strand, 54172081 - 54171829
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtt-----------tg 237  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||    
T  54172081 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 54171982  T
Q  238 ttcgaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc-ttct-ttgtatatt 333  Q
    || |||||||||| ||||| |   |||||||||||||||||||||||||||||||||| |   ||||| |||||||||||  ||| || | ||||| |||    
T  54171981 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataag--accattatcttgtacatt 54171887  T
Q  334 ttgtatgtagaatcaataaagatcatttacaa-tttcatcataactttcttctctctc 390  Q
        || ||||||||||||||||||||||||| |||||||| || |||||||||||||    
T  54171886 catgatatagaatcaataaagatcatttacaattttcatcacaattttcttctctctc 54171829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 149 - 239
Target Start/End: Complemental strand, 54167501 - 54167411
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgtt 239  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54167501 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgtt 54167411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 231 - 335
Target Start/End: Original strand, 43554660 - 43554764
Alignment:
Q  231 aagtttgttcgaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtat 330  Q
    ||||||||| ||||||| || |||||||||||||||| ||||||||||| || ||||||||||||||  ||||||||||||| ||||||||  |||||||    
T  43554660 aagtttgttagaggttaacaaataagatctagagtttattacattgcttctgtttcaagcaacttagtaagacattgtatatgagctacctcttttgtat 43554759  T
Q  331 atttt 335  Q
    |||||    
T  43554760 atttt 43554764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 43554292 - 43554371
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgtta 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||  ||  |||||||||||||    
T  43554292 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattagtcacattttgtttttagtttgtta 43554371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 149 - 239
Target Start/End: Complemental strand, 39399279 - 39399191
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgtt 239  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| | || | || ||||||||||||| ||||||    
T  39399279 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgtt 39399191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 329
Target Start/End: Original strand, 755955 - 756020
Alignment:
Q  264 gtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgta 329  Q
    ||||||||||||||||||||||||||| || || |||||   |||||||||||||||||| |||||    
T  755955 gtttgttacattgcttgtgcttcaagctacctaactagatggtgtatataagctaccttcattgta 756020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 341 - 390
Target Start/End: Complemental strand, 54167299 - 54167249
Alignment:
Q  341 tagaatcaataaagatcatttacaa-tttcatcataactttcttctctctc 390  Q
    ||||||||||||||||||||||||| |||||||| || |||||||||||||    
T  54167299 tagaatcaataaagatcatttacaattttcatcacaattttcttctctctc 54167249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 260 - 293
Target Start/End: Complemental strand, 54167377 - 54167344
Alignment:
Q  260 tagagtttgttacattgcttgtgcttcaagcaac 293  Q
    ||||||||||||||||||||||||||||||||||    
T  54167377 tagagtttgttacattgcttgtgcttcaagcaac 54167344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 148 - 390
Target Start/End: Original strand, 28644561 - 28644813
Alignment:
Q  148 gtgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttc------- 240  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||            
T  28644561 gtgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tttgttttagtttgttatgaagtttgttacaagttt 28644658  T
Q  241 ----gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtata-tttt 335  Q
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||    
T  28644659 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacagtgtatataagctacctcctttgtatattttt 28644758  T
Q  336 gtatgtagaatcaataaagatcatttacaatttcatcataactttcttctctctc 390  Q
    | |||||||||||||||  |||| ||||||||||||||||| |||||||||||||    
T  28644759 gcatgtagaatcaataagaatcaattacaatttcatcataattttcttctctctc 28644813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 149 - 390
Target Start/End: Complemental strand, 30410486 - 30410235
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttc-------- 240  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | ||||||| ||||||||||||||||||             
T  30410486 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tctgttttaatttgttatgaagtttgttacaagtttg 30410389  T
Q  241 ---gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtata-ttttg 336  Q
       |||||||| |||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||| ||||||| | ||||     
T  30410388 ttagaggttagtagataagatctagattttgttacattgcttgtacttcaagcaacctagctagatattgtatataagctacctcctttgtacattttta 30410289  T
Q  337 tatgtagaatcaataaagatcatttacaatttcatcataactttcttctctctc 390  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30410288 tatgtagaatcaataaagatcaattacaatttcatcataactttcttctctctc 30410235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 149 - 379
Target Start/End: Original strand, 38757003 - 38757228
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttcgaggttag 248  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | |||||||||||||||  ||||||||| ||||||||    
T  38757003 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tctgttttagtttgttac-aagtttgttagaggttag 38757099  T
Q  249 cagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatattttgtatgtagaatca 348  Q
     ||||||||||||||||||||||||||||||||| |||||||||| |||| ||| |||||||||||||||||| ||||||||||||| |||| ||||| |    
T  38757100 tagataagatctagagtttgttacattgcttgtgattcaagcaacctagccagatattgtatataagctacctcctttgtatattttatatgcagaat-a 38757198  T
Q  349 ataaagatcatttacaatttcatcataactt 379  Q
    || |  |||| ||||| ||||||||||||||    
T  38757199 at-agtatcaattacattttcatcataactt 38757228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 149 - 335
Target Start/End: Complemental strand, 42234851 - 42234656
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttc-------- 240  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||             
T  42234851 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttg 42234754  T
Q  241 ---gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatatttt 335  Q
       |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42234753 ttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataaactaccttctttgtatatttt 42234656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 149 - 335
Target Start/End: Original strand, 33071918 - 33072113
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttc-------- 240  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||             
T  33071918 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtgattaatcacac-tttcttttagtttgttatgaagtttgttacaagtttg 33072015  T
Q  241 ---gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatatttt 335  Q
       |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33072016 ttggaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 33072113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 149 - 390
Target Start/End: Complemental strand, 30405960 - 30405726
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgtttt--agtttgttatgaagtttgttcgaggtt 246  Q
    |||||||||||||||||||||||||||||| ||||||||||||| || ||  |        |||||||| |  |||||||||  ||||||||| ||||||    
T  30405960 tgttagtttgttttaattcaagtttagttt-agtgataatcacattctgtttt--------agtttgttatgaagtttgttac-aagtttgttagaggtt 30405871  T
Q  247 agcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtata-ttttgtatgtagaa 345  Q
    || |||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||| ||||||| | |||| |||||||||    
T  30405870 agtagataagatctagaatttgttacattgcttgtacttcaagcaacctagctagatattgtatataagctacctcctttgtacatttttatatgtagaa 30405771  T
Q  346 tcaataaagatcatttacaatttcatcataactttcttctctctc 390  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  30405770 tcaataaagatcaattacaatttcatcataactttcttctctctc 30405726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 149 - 390
Target Start/End: Complemental strand, 197841 - 197591
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtt-----------tg 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||    
T  197841 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 197742  T
Q  238 ttcgaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc-ttct-ttgtatatt 333  Q
    || |||||||||| ||||| |   |||||||||||||||||||||||||||||||||| |   ||||| |||||||||||  ||| || | ||||| | |    
T  197741 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataag--accattatcttgtaca-t 197648  T
Q  334 ttgtatgtagaatcaataaagatcatttacaatttcatcataactttcttctctctc 390  Q
    |  || | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  197647 tcataagaagaatcaataaagatcatttacaatttcatcataactttcttctctctc 197591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 149 - 390
Target Start/End: Complemental strand, 202359 - 202109
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtt-----------tg 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||    
T  202359 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 202260  T
Q  238 ttcgaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc-ttct-ttgtatatt 333  Q
    || |||||||||| ||||| |   |||||||||||||||||||||||||||||||||| |   ||||| |||||||||||  ||| || | ||||| | |    
T  202259 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataag--accattatcttgtaca-t 202166  T
Q  334 ttgtatgtagaatcaataaagatcatttacaatttcatcataactttcttctctctc 390  Q
    |  || | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  202165 tcataagaagaatcaataaagatcatttacaatttcatcataactttcttctctctc 202109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 149 - 390
Target Start/End: Complemental strand, 312678 - 312428
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtt-----------tg 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||    
T  312678 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 312579  T
Q  238 ttcgaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc-ttct-ttgtatatt 333  Q
    || |||||||||| ||||| |   |||||||||||||||||||||||||||||||||| |   ||||| |||||||||||  ||| || | ||||| | |    
T  312578 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataag--accattatcttgtaca-t 312485  T
Q  334 ttgtatgtagaatcaataaagatcatttacaatttcatcataactttcttctctctc 390  Q
    |  || | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  312484 tcataagaagaatcaataaagatcatttacaatttcatcataactttcttctctctc 312428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 149 - 390
Target Start/End: Complemental strand, 317196 - 316946
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtt-----------tg 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||    
T  317196 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 317097  T
Q  238 ttcgaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc-ttct-ttgtatatt 333  Q
    || |||||||||| ||||| |   |||||||||||||||||||||||||||||||||| |   ||||| |||||||||||  ||| || | ||||| | |    
T  317096 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataag--accattatcttgtaca-t 317003  T
Q  334 ttgtatgtagaatcaataaagatcatttacaatttcatcataactttcttctctctc 390  Q
    |  || | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  317002 tcataagaagaatcaataaagatcatttacaatttcatcataactttcttctctctc 316946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 149 - 390
Target Start/End: Complemental strand, 43807640 - 43807391
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatg-----------aagtttg 237  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | | |||||||||||||||||           |||||||    
T  43807640 tgttagcttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcac-attctgttttagtttgttatgaagtttgttacaagtttg 43807543  T
Q  238 ttcgaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc-ttct-ttgtatatt 333  Q
    || |||||||||| ||||| |   |||||||||||||||||||||||||||||||||| |   ||||| |||||||||||  ||| || | ||||| | |    
T  43807542 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataag--accattatcttgtaca-t 43807449  T
Q  334 ttgtatgtagaatc-aataaagatcatttacaatttcatcataactttcttctctctc 390  Q
    |  |||| |||||| || ||||||||||||||||||||||||||||||||||||||||    
T  43807448 tcatatgaagaatcaaaaaaagatcatttacaatttcatcataactttcttctctctc 43807391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 149 - 390
Target Start/End: Complemental strand, 43812199 - 43811950
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatg-----------aagtttg 237  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | | |||||||||||||||||           |||||||    
T  43812199 tgttagcttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcac-attctgttttagtttgttatgaagtttgttacaagtttg 43812102  T
Q  238 ttcgaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc-ttct-ttgtatatt 333  Q
    || |||||||||| ||||| |   |||||||||||||||||||||||||||||||||| |   ||||| |||||||||||  ||| || | ||||| | |    
T  43812101 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataag--accattatcttgtaca-t 43812008  T
Q  334 ttgtatgtagaatc-aataaagatcatttacaatttcatcataactttcttctctctc 390  Q
    |  |||| |||||| || ||||||||||||||||||||||||||||||||||||||||    
T  43812007 tcatatgaagaatcaaaaaaagatcatttacaatttcatcataactttcttctctctc 43811950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 41945339 - 41945416
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgtta 228  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| | |||||||||||||||||    
T  41945339 tgttagtttgttttaattcaagtttag-tttagtgataatcacaatcaatgattaatcac-actttgttttagtttgtta 41945416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 149 - 239
Target Start/End: Original strand, 41949802 - 41949890
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgtt 239  Q
    ||||||||| |||||||||||| ||||||| |||||||||||||||||||| |||||||| | | |||||||||||||| |||||||||||    
T  41949802 tgttagtttcttttaattcaagcttagttt-agtgataatcacaatcagtgattaatcac-actctgttttagtttgttttgaagtttgtt 41949890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 318
Target Start/End: Complemental strand, 27435223 - 27435169
Alignment:
Q  264 gtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagcta 318  Q
    ||||||||||| |||||||||||||||||| ||  |||| |||||||||||||||    
T  27435223 gtttgttacatagcttgtgcttcaagcaacctaagtagatattgtatataagcta 27435169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 27435314 - 27435261
Alignment:
Q  178 ttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatga 231  Q
    |||||||||||| || | ||||||||||||||   |||||||||||||||||||    
T  27435314 ttagtgataatctcacttagtggttaatcacattattgttttagtttgttatga 27435261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 156; Significance: 9e-83; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 149 - 379
Target Start/End: Complemental strand, 8315661 - 8315421
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttc-------- 240  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  8315661 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 8315563  T
Q  241 ---gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatattttgt 337  Q
       |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||  |    
T  8315562 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttcat 8315463  T
Q  338 atgtagaatcaataaagatcatttacaatttcatcataactt 379  Q
    ||||||||||||||||||||| || || ||||||||||||||    
T  8315462 atgtagaatcaataaagatcaatttcattttcatcataactt 8315421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 149 - 390
Target Start/End: Complemental strand, 27574884 - 27574643
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttcgaggttag 248  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||    
T  27574884 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tttgttttagtttgttatgaagtttgttagaggttag 27574787  T
Q  249 cagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatatttt--gtatgtagaat 346  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| | |||||  ||||| | |||    
T  27574786 cagataagatctaaagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgaacatttttcgtatggaaaat 27574687  T
Q  347 caataaagatcatttacaatttcatcataactttcttctctctc 390  Q
    ||||||  |||| ||||||||||| ||||| |||  ||||||||    
T  27574686 caataagaatcaattacaatttcaccataatttttctctctctc 27574643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 149 - 390
Target Start/End: Complemental strand, 27552267 - 27552014
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttcgaggtt-- 246  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||  |||||      
T  27552267 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tttgttttagtttgttatgaagtttgttacaggtttg 27552170  T
Q  247 ---------agcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatatttt-- 335  Q
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||      
T  27552169 ttaaacgttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttc 27552070  T
Q  336 gtatgtagaatcaataaagatcatttacaatttcatcataac-tttcttctctctc 390  Q
    ||||| |||||||||||  |||| |||||||||||||||||| |||||||||||||    
T  27552069 gtatggagaatcaataagaatcaattacaatttcatcataacttttcttctctctc 27552014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 149 - 379
Target Start/End: Complemental strand, 8320199 - 8319960
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttc-------- 240  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||             
T  8320199 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacaa-tatgttttagtttgttatgaagtttgttacaagtttg 8320102  T
Q  241 ---gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatattttgt 337  Q
       |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||| ||||  |    
T  8320101 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagaaacttagctagatattgtatataagctacctcctttgtacatttctt 8320002  T
Q  338 atgtagaatcaataaagatcatttacaatttcatcataactt 379  Q
    ||||||||||||||||||||| || || ||||||||||||||    
T  8320001 atgtagaatcaataaagatcaatttcattttcatcataactt 8319960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 149 - 335
Target Start/End: Complemental strand, 17887000 - 17886810
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgtta-----tgaagtttgttcgag 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||     | ||||||||| |||    
T  17887000 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcac-attttgttttagtttgttataaagtaaagtttgttagag 17886902  T
Q  244 gttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatatttt 335  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||    
T  17886901 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcagcttagctagacattgtatataagctacctcctttgtatttttt 17886810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 149 - 335
Target Start/End: Complemental strand, 17096431 - 17096236
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttc-------- 240  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||             
T  17096431 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtgattaatcacat-tttgttttagtttgttatgaagtttgttacaagtttg 17096334  T
Q  241 ---gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatatttt 335  Q
       ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  17096333 ttagaggttagcagataagatctatagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtacatttt 17096236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 148 - 380
Target Start/End: Original strand, 17779913 - 17780156
Alignment:
Q  148 gtgttagtttgtttt-aattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttc------ 240  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||| | |||||||||  ||||||||||||||||||||||||||||           
T  17779913 gtgttagtttgttttgaattcaagtttagttt-agtgataatcacaatcagagattaatcacat-tttgttttagtttgttatgaagtttgttaaaagtt 17780010  T
Q  241 -----gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatatttt 335  Q
         |||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||| |||||    
T  17780011 tgttagaggctagtagataagatttagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctatctcctttgtacatttt 17780110  T
Q  336 -gtatgtagaatcaataaagatcatttacaatttcatcataacttt 380  Q
     |||||||||||||||||  |||| |||||||||||||||||||||    
T  17780111 cgtatgtagaatcaataagaatcaattacaatttcatcataacttt 17780156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 149 - 335
Target Start/End: Complemental strand, 17895881 - 17895685
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttc-------- 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||| |||||||||||| |||||||||||             
T  17895881 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacat-tttattttagtttgttctgaagtttgttacaagtttg 17895783  T
Q  241 ---gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatatttt 335  Q
       |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||    
T  17895782 ttagaggttagcaaataagatctagaatttgttacattgcttgtgcttcaagcaacttagctaggcattgtatataagctacctcctttgtatttttt 17895685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 147 - 335
Target Start/End: Complemental strand, 14531947 - 14531749
Alignment:
Q  147 tgtgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttc------ 240  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||  |||||||||||| |||||||||||||||           
T  14531947 tgtgttagtttgttttaattcaagtttagttttagttataatcacaatcaatgattaatcacat-tttgttttagttcgttatgaagtttgttacaggtt 14531849  T
Q  241 -----gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatatttt 335  Q
         |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||  |||||||||||||    
T  14531848 tgttagaggttagcaaataagatctagagtttgttacattgcttgtgcttgaagcaacttagctagacattgtatatactctaccacctttgtatatttt 14531749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 149 - 388
Target Start/End: Complemental strand, 6463583 - 6463345
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttcgaggttag 248  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||  ||||||||| ||||||||    
T  6463583 tgttagtttgtcttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tttgttttagtttgttac-aagtttgttagaggttag 6463487  T
Q  249 cagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatatttt-gtatgtagaatc 347  Q
     ||||||||||||||||||||||||||  |||||||||||||||| |||||||| |||||||||||||||||| ||||||| ||||| ||||||||||||    
T  6463486 tagataagatctagagtttgttacattatttgtgcttcaagcaacctagctagatattgtatataagctacctcctttgtacattttagtatgtagaatc 6463387  T
Q  348 aataaagatcatttacaatttcatcataac-tttcttctctc 388  Q
    ||||||||||| |||||||||||||||||| |||||||||||    
T  6463386 aataaagatcaattacaatttcatcataacttttcttctctc 6463345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 149 - 390
Target Start/End: Original strand, 8055392 - 8055643
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttc-------- 240  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | | ||||||||||||||||||||||||             
T  8055392 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tctattttagtttgttatgaagtttgttgcaagtttg 8055489  T
Q  241 ---gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatattttgt 337  Q
       |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||  |    
T  8055490 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttcat 8055589  T
Q  338 atgtagaatcaataaagatcatttacaa-tttcatcataactttcttctctctc 390  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  8055590 atgtagaatcaataaagatcttttacaattttcatcataactttcttctctctc 8055643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 149 - 390
Target Start/End: Original strand, 8050839 - 8051090
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttc-------- 240  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | | ||||||||||||||||||||||||             
T  8050839 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tctattttagtttgttatgaagtttgttacaagtttg 8050936  T
Q  241 ---gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatattttgt 337  Q
       |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||| ||||||| ||||  |    
T  8050937 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctgcctcctttgtacatttcat 8051036  T
Q  338 atgtagaatcaataaagatcatttacaa-tttcatcataactttcttctctctc 390  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  8051037 atgtagaatcaataaagatcttttacaattttcatcataactttcttctctctc 8051090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 148 - 335
Target Start/End: Complemental strand, 12999623 - 12999426
Alignment:
Q  148 gtgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttc------- 240  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||            
T  12999623 gtgttagtttgttttaatttaagtttagttttagtgataataacaatcagtggttaatcacat-tttgttttagtttgttatgaagtttgttacaagttt 12999525  T
Q  241 ----gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatatttt 335  Q
        ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  12999524 gttagaggttagcagataagatctagagtttgttacattacttgtgcttcaagcaacttagctagacattgtatataagctatctcctttgtatatttt 12999426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 149 - 390
Target Start/End: Original strand, 36670503 - 36670755
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatg-----------aagtttg 237  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||    
T  36670503 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 36670602  T
Q  238 ttcgaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc-ttct-ttgtatatt 333  Q
    || |||||||||| ||||| |   |||||||||||||||||||||||||||||||||| |   ||||| |||||||||||  ||| || | ||||| |||    
T  36670603 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataag--accattatcttgtacatt 36670697  T
Q  334 ttgtatgtagaatcaataaagatcatttacaa-tttcatcataactttcttctctctc 390  Q
       ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36670698 cattatatagaatcaataaagatcatttacaattttcatcataactttcttctctctc 36670755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 149 - 390
Target Start/End: Original strand, 36675051 - 36675303
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatg-----------aagtttg 237  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||    
T  36675051 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 36675150  T
Q  238 ttcgaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc-ttct-ttgtatatt 333  Q
    || |||||||||| ||||| |   |||||||||||||||||||||||||||||||||| |   ||||| |||||||||||  ||| || | ||||| |||    
T  36675151 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataag--accattatcttgtacatt 36675245  T
Q  334 ttgtatgtagaatcaataaagatcatttacaa-tttcatcataactttcttctctctc 390  Q
       ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36675246 cattatatagaatcaataaagatcatttacaattttcatcataactttcttctctctc 36675303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 149 - 302
Target Start/End: Complemental strand, 13271131 - 13270980
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttcgaggttag 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | ||| |||||||||||||| ||||||||| ||||||||    
T  13271131 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaattac-actttattttagtttgttat-aagtttgttagaggttag 13271034  T
Q  249 cagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctaga 302  Q
     | |||||||||| |||||||||||||| || ||||||||||||||||||||||    
T  13271033 taaataagatctaaagtttgttacattgtttttgcttcaagcaacttagctaga 13270980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 149 - 239
Target Start/End: Complemental strand, 35950595 - 35950507
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgtt 239  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| | || | || ||||||||||||| ||||||    
T  35950595 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcac-atttaggttcagtttgttatgaattttgtt 35950507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 41093824 - 41093881
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatca 207  Q
    |||| |||||||||||||||| |||||||| ||||||||||||||| |||| |||||||    
T  41093824 tgttggtttgttttaattcaaatttagttt-agtgataatcacaattagtgattaatca 41093881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 149 - 390
Target Start/End: Original strand, 30695293 - 30695545
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttc-------- 240  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||             
T  30695293 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtggttaatcacat-tttgttttagtttgttatgaagtttgttacaagtttg 30695390  T
Q  241 ---gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatatttt-g 336  Q
       |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||| |    
T  30695391 ttagaggttagtatataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttcg 30695490  T
Q  337 tatgtagaatcaataaagatcatttacaatttcatcataa-ctttcttctctctc 390  Q
    |||||||||||||||||||||| |||||||||||||||||  |||||||||||||    
T  30695491 tatgtagaatcaataaagatcaattacaatttcatcataatttttcttctctctc 30695545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 149 - 390
Target Start/End: Original strand, 37682036 - 37682277
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttcgaggttag 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37682036 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttagaggttag 37682135  T
Q  249 cagataagat--ctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc-ttct-ttgtatattttgtatgtaga 344  Q
    || ||||| |   |||||||||||||||||||||||||||||||||| |   ||||| |||||||||||  ||| || | ||||| |||   ||||||||    
T  37682136 caaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataag--accattatcttgtacattcattatgtaga 37682230  T
Q  345 atcaataaagatcatttacaa-tttcatcataactttcttctctctc 390  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||    
T  37682231 atcaataaagatcatttacaattttcatcataactttcttctctctc 37682277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 149 - 390
Target Start/End: Complemental strand, 40367757 - 40367517
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttcgaggttag 248  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||  |||||||||||||||||  ||||||||| |||| |||    
T  40367757 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagagattaatcacat-tttgttttagtttgttac-aagtttgttagaggctag 40367661  T
Q  249 cagataagatctagagtttgttacattgcttgtgcttcaagc-aacttagctagacattgtatataagctaccttctttgtatatttt-gtatgtagaat 346  Q
     ||||||||||||||||||||||||||||||||||||||||| ||||| | |||| |||||||||||||||||| ||||||| |||||  ||||||||||    
T  40367660 tagataagatctagagtttgttacattgcttgtgcttcaagcaaacttggttagatattgtatataagctacctcctttgtacattttcatatgtagaat 40367561  T
Q  347 caataaagatcatttacaatttcatcataactttcttctctctc 390  Q
    ||||||  |||| ||||||||||||||||| |||||||||||||    
T  40367560 caataagaatcaattacaatttcatcataattttcttctctctc 40367517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 149 - 335
Target Start/End: Original strand, 36632314 - 36632497
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttcgaggttag 248  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||  |||||||||||||||||  ||||||||| ||||||||    
T  36632314 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcagtgaataatcacac-tttgttttagtttgttac-aagtttgttagaggttag 36632410  T
Q  249 cagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatatttt 335  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36632411 caaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 36632497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 149 - 390
Target Start/End: Original strand, 37658732 - 37658973
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttcgaggttag 248  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  37658732 tgttagtttgttttaattcaagtttagttttagtcataatcataatcagtggttaatcacaagtttgttttagcttgttatgaagtttgttagaggttag 37658831  T
Q  249 cagataagat--ctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc-ttct-ttgtatattttgtatgtaga 344  Q
    || ||||| |   |||||||||||||||||||||||||||||||||| |   ||||| |||||||||||  ||| || | ||||| |||   ||||||||    
T  37658832 caaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataag--accattatcttgtacattcattatgtaga 37658926  T
Q  345 atcaataaagatcatttacaa-tttcatcataactttcttctctctc 390  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||    
T  37658927 atcaataaagatcatttacaattttcatcataactttcttctctctc 37658973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 148 - 335
Target Start/End: Complemental strand, 32486144 - 32485947
Alignment:
Q  148 gtgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttc------- 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||  ||||||||||||||||||||||||||||            
T  32486144 gtgttagtttgttttaattcaagtttagttttagtgataatcacaatcaatgattaatcacat-tttgttttagtttgttatgaagtttgttacaagttt 32486046  T
Q  241 ----gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatatttt 335  Q
        |||||||||| ||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||| |||| ||||||||    
T  32486045 gttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaacctccttagctagacattgtatataagctacctcctttatatatttt 32485947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 149 - 335
Target Start/End: Complemental strand, 26336964 - 26336767
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttc-------- 240  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||  ||  |||||||||||||||| |||||||             
T  26336964 tgttagtttgttttaattcaagtttaattttagtgataatcacaatcggtgattaatcacattttgtttttagtttgttatgatgtttgttacatgtttg 26336865  T
Q  241 ---gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatatttt 335  Q
       |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  26336864 ttagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 26336767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 149 - 335
Target Start/End: Original strand, 19502307 - 19502504
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaa-tcacaagtttgttttagtttgttatgaagtttgttc------- 240  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||  ||||||||||||||||||||||||||||            
T  19502307 tgttagtttgttttaatttaagtttagttttagtgataatcacaatcagtgattaaatcacat-tttgttttagtttgttatgaagtttgttacaagttt 19502405  T
Q  241 ----gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatatttt 335  Q
        |||||||| | ||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||    
T  19502406 gttagaggttagaaaataagatatagagtttgttacattgtttgtgcttcaagcaacttagctaaacattgtatataagctacctcctttatatatttt 19502504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 149 - 390
Target Start/End: Complemental strand, 7099531 - 7099280
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtt-----------tg 237  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||    
T  7099531 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7099432  T
Q  238 ttcgaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc-ttct-ttgtatatt 333  Q
    || |||||||||| ||||| |   |||||||||||||||||||||||||||||||||| |   ||||| |||||||||||  ||| || | ||||| |||    
T  7099431 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataag--accattatcttgtacatt 7099337  T
Q  334 ttgtatgtagaatcaataaagatcatttacaatttcatcataactttcttctctctc 390  Q
        || ||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  7099336 cataatatagaatcaaaaaagatcatttacaaattcatcataactttcttctctctc 7099280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 149 - 390
Target Start/End: Complemental strand, 7104100 - 7103849
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtt-----------tg 237  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||    
T  7104100 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7104001  T
Q  238 ttcgaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc-ttct-ttgtatatt 333  Q
    || |||||||||| ||||| |   |||||||||||||||||||||||||||||||||| |   ||||| |||||||||||  ||| || | ||||| |||    
T  7104000 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataag--accattatcttgtacatt 7103906  T
Q  334 ttgtatgtagaatcaataaagatcatttacaatttcatcataactttcttctctctc 390  Q
        || ||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  7103905 cataatatagaatcaaaaaagatcatttacaaattcatcataactttcttctctctc 7103849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 149 - 390
Target Start/End: Original strand, 16794108 - 16794360
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatg-----------aagtttg 237  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||           |||||||    
T  16794108 tgttagtttgttttaattcaagtttagtttcagtgataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 16794207  T
Q  238 ttcgaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc-ttct-ttgtatatt 333  Q
    || |||||||||| ||||| |   |||||||||||||||||||||||||||||||||| |   ||||| |||||||||||  ||| || | ||||| |||    
T  16794208 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataag--accattatcttgtacatt 16794302  T
Q  334 ttgtatgtagaatcaataaagatcatttacaa-tttcatcataactttcttctctctc 390  Q
        || ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16794303 cataatatagaatcaataaagatcatttacaattttcatcataactttcttctctctc 16794360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 149 - 390
Target Start/End: Original strand, 16798669 - 16798921
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatg-----------aagtttg 237  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||           |||||||    
T  16798669 tgttagtttgttttaattcaagtttagtttcagtgataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 16798768  T
Q  238 ttcgaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc-ttct-ttgtatatt 333  Q
    || |||||||||| ||||| |   |||||||||||||||||||||||||||||||||| |   ||||| |||||||||||  ||| || | ||||| |||    
T  16798769 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataag--accattatcttgtacatt 16798863  T
Q  334 ttgtatgtagaatcaataaagatcatttacaa-tttcatcataactttcttctctctc 390  Q
        || ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16798864 cataatatagaatcaataaagatcatttacaattttcatcataactttcttctctctc 16798921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 148 - 293
Target Start/End: Original strand, 12018730 - 12018888
Alignment:
Q  148 gtgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatg-----------aagttt 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||    
T  12018730 gtgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 12018829  T
Q  237 gttcgaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 293  Q
    ||| |||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  12018830 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 12018888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 149 - 293
Target Start/End: Original strand, 12023289 - 12023446
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatg-----------aagtttg 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||    
T  12023289 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 12023388  T
Q  238 ttcgaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 293  Q
    || |||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  12023389 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 12023446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 149 - 390
Target Start/End: Complemental strand, 40371892 - 40371655
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatg-----------aagtttg 237  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| | |||||||||||||||||||           |||||||    
T  40371892 tgttagtttgttttaattcaagtttag-tttagtgataatcacaatcagagattaatcac-attttgttttagtttgttatgaagattgttacaagtttg 40371795  T
Q  238 ttcgaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctaccttctttgtatatttt-g 336  Q
    || |||| ||| |||||||||||||||||| |||||||| |||||              | |||| |||||||||||||||||| ||||||| |||||      
T  40371794 ttagaggctagtagataagatctagagtttattacattgtttgtg--------------gttagatattgtatataagctacctcctttgtacattttca 40371709  T
Q  337 tatgtagaatcaataaagatcatttacaatttcatcataactttcttctctctc 390  Q
    ||||||||||||||||  ||||  |||||||||||||||| |||||||||||||    
T  40371708 tatgtagaatcaataagaatcaactacaatttcatcataattttcttctctctc 40371655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 231 - 321
Target Start/End: Complemental strand, 20830394 - 20830304
Alignment:
Q  231 aagtttgttcgaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacct 321  Q
    ||||||||| ||| |||||| |||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20830394 aagtttgttagagattagcaaataagatcaagtgtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctacct 20830304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 149 - 314
Target Start/End: Original strand, 43384945 - 43385126
Alignment:
Q  149 tgttagtttgtttt--aattcaagtttagttt----tagtgataatcacaatcagtggttaatcacaagtttg-ttttagtttgttatgaagtttgttc- 240  Q
    ||||||||||||||  ||||||||||||||||    |||||||||||| ||| ||||||||||||||  |||| ||||||||||||||||||||||||      
T  43384945 tgttagtttgttttttaattcaagtttagtttagtttagtgataatcataattagtggttaatcaca--tttgcttttagtttgttatgaagtttgttac 43385042  T
Q  241 ----------gaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataa 314  Q
              || ||||||| |||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43385043 aagtttgttagaagttagcaaataaaatctagggtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataa 43385126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 149 - 239
Target Start/End: Original strand, 10277204 - 10277292
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgtt 239  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| | || | || ||||||||||||| ||||||    
T  10277204 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgtt 10277292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 149 - 239
Target Start/End: Original strand, 10274546 - 10274634
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgtt 239  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||| | || | || ||||||||||||| ||||||    
T  10274546 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattaatggttaatcac-atttagattcagtttgttatgaattttgtt 10274634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 390
Target Start/End: Original strand, 12018932 - 12018984
Alignment:
Q  340 gtagaatcaataaagatca-tttacaa-tttcatcataactttcttctctctc 390  Q
    ||||||||||||||||||| ||||||| ||||||||||| |||||||||||||    
T  12018932 gtagaatcaataaagatcattttacaattttcatcataattttcttctctctc 12018984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 390
Target Start/End: Original strand, 12023490 - 12023542
Alignment:
Q  340 gtagaatcaataaagatca-tttacaa-tttcatcataactttcttctctctc 390  Q
    ||||||||||||||||||| ||||||| ||||||||||| |||||||||||||    
T  12023490 gtagaatcaataaagatcattttacaattttcatcataattttcttctctctc 12023542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 296
Target Start/End: Original strand, 5733082 - 5733114
Alignment:
Q  264 gtttgttacattgcttgtgcttcaagcaactta 296  Q
    ||||||||| |||||||||||||||||||||||    
T  5733082 gtttgttactttgcttgtgcttcaagcaactta 5733114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 149 - 390
Target Start/End: Complemental strand, 45022 - 44771
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtt-----------tg 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||    
T  45022 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 44923  T
Q  238 ttcgaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc-ttct-ttgtatatt 333  Q
    || |||||||||| ||||| |   |||||||||||||||||||||||||||||||||| |   ||||| |||||||||||  ||| || | ||||| |||    
T  44922 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataag--accattatcttgtacatt 44828  T
Q  334 ttgtatgtagaatcaataaagatcatttacaatttcatcataactttcttctctctc 390  Q
       ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44827 cattatgtagaatcaataaagatcatttacaaattcatcataactttcttctctctc 44771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 149 - 390
Target Start/End: Complemental strand, 49602 - 49351
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtt-----------tg 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||    
T  49602 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 49503  T
Q  238 ttcgaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc-ttct-ttgtatatt 333  Q
    || |||||||||| ||||| |   |||||||||||||||||||||||||||||||||| |   ||||| |||||||||||  ||| || | ||||| |||    
T  49502 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgt--ttagac-ttgtatataag--accattatcttgtacatt 49408  T
Q  334 ttgtatgtagaatcaataaagatcatttacaatttcatcataactttcttctctctc 390  Q
       ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  49407 cattatgtagaatcaataaagatcatttacaaattcatcataactttcttctctctc 49351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 149 - 293
Target Start/End: Original strand, 2980 - 3137
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatg-----------aagtttg 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||    
T  2980 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 3079  T
Q  238 ttcgaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 293  Q
    || |||||||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  3080 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 3137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 149 - 390
Target Start/End: Original strand, 7506 - 7757
Alignment:
Q  149 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatg-----------aagtttg 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||           |||||||    
T  7506 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacaa-tttgttttagtttgttatgaagtttgttacaagtttg 7604  T
Q  238 ttcgaggttagcagataagat--ctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc-ttct-ttgtatatt 333  Q
    || |||||||||| ||||| |   ||||||||||||||||||||||| |||||||||| |   ||||| |||||||||||  ||| || | ||||| |||    
T  7605 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgtttcaagcaacgt--ttagac-ttgtatataag--accattatcttgtacatt 7699  T
Q  334 ttgtatgtagaatcaataaagatcatttacaa-tttcatcataactttcttctctctc 390  Q
        |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7700 cataatgtagaatcaataaagatcatttacaattttcatcataactttcttctctctc 7757  T

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