View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12858_low_1 (Length: 612)
Name: NF12858_low_1
Description: NF12858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12858_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 110 - 605
Target Start/End: Original strand, 16687639 - 16688134
Alignment:
| Q |
110 |
aggatataaaagtgcgacttaatgtcacactcaagctacgatgacaatttcacaacttttcgcacgctttcctcctcatttctcttcactcatttgagcg |
209 |
Q |
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| T |
16687639 |
aggatatagaagcgcgacttaacgtcacactcaagctacgatgacaatttcaccacttttcgcacactttcctcctcatttctcgtcactcatttgagcg |
16687738 |
T |
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| Q |
210 |
ttagagtgctgacttgttttgcaagtctctttccgctcgccagggaattatctcatccgctccataatctttcctccctcgcacttgactctgatcaata |
309 |
Q |
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| T |
16687739 |
ttagagtgctaacttgttttgcaagtctctttccgctcgccagagaattatctcatccgctccataatctttcctccctcgcacttgactctgatcaata |
16687838 |
T |
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| Q |
310 |
gcatgatcatattcgacaatgcatctctaccctggtctactccaaaacattggcactggaaggagggaaaacttcatcgtttccattggagtcctttgat |
409 |
Q |
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| T |
16687839 |
gcatgatcatattcgacaatgcatctctaccctggtctactccaaaacattggcactggaaggagggaaaacttcatcgtttccatcggagtcctttgat |
16687938 |
T |
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| Q |
410 |
tcaaccactgtaaccgtttcagtgtttccataaccattttttgctacgctctctcattcaccttgtgctaagaaaaccactgatgaaagctacaacatag |
509 |
Q |
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| T |
16687939 |
tcaaccaccataaccgtttcggtgtttccataaccattttttgctacgctctctcgttcaccttgtgctaagaaaaccactgatgaaagctacaacatag |
16688038 |
T |
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| Q |
510 |
tcgtggctcttcctttgggatccatactctttagagttaagctgacaccatcctctctcccgtcgcattctgcgacgtcaatgttgcttcttctca |
605 |
Q |
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| T |
16688039 |
tcgtggctcttcctttgggatccatactctttagagttaagctgacaccatcctctctcccgtcgcagaaggggacgtcgatgttgcttcttctca |
16688134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 16687373 - 16687454
Alignment:
| Q |
17 |
tttctattctaaatgtttgtaaccaaagttggagtactcgagttaaagatcacatgcgtctttcagacatcattgatgtgtt |
98 |
Q |
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| T |
16687373 |
tttctattctaaatgtttgtaaccaaagttggagtactcgagttaacgatcacatgtttctttcagacatcattgatgtgtt |
16687454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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