View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12858_low_7 (Length: 278)

Name: NF12858_low_7
Description: NF12858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12858_low_7
NF12858_low_7
[»] chr6 (7 HSPs)
chr6 (96-188)||(31986131-31986222)
chr6 (175-256)||(31986238-31986319)
chr6 (199-251)||(31983627-31983679)
chr6 (145-204)||(31981451-31981510)
chr6 (22-56)||(31986085-31986119)
chr6 (204-259)||(22471074-22471129)
chr6 (17-46)||(31981343-31981372)


Alignment Details
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 96 - 188
Target Start/End: Original strand, 31986131 - 31986222
Alignment:
Q  96 aatacagttaaattgaaaagtcagagaaacatacatcaaactttgaagcaaattaaaaacattatggtggataaataatatgcttaaataaac 188  Q
    |||||| ||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||    
T  31986131 aatacaattaaattgaaa-gtcagagaaatataaatcaaactttgaagcaaattaaaaacattatgatgggtaaacaatatgcttaaataaac 31986222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 175 - 256
Target Start/End: Original strand, 31986238 - 31986319
Alignment:
Q  175 atgcttaaataaacttttgccctttaaaatttctcaattgttcgaatttgacctcatagtttcaattaagtgattatcgccc 256  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||| |||||| |||||||| ||||    
T  31986238 atgcttaaataaacttttgccctataaaatttctcaattgttcgattttgacctcgtagttacaattacgtgattatggccc 31986319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 31983627 - 31983679
Alignment:
Q  199 taaaatttctcaattgttcgaatttgacctcatagtttcaattaagtgattat 251  Q
    |||||| ||||| |||||||| |||||||||||||||||||||| ||||||||    
T  31983627 taaaatctctcagttgttcgattttgacctcatagtttcaattacgtgattat 31983679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 31981451 - 31981510
Alignment:
Q  145 aaattaaaaacattatggtggataaataatatgcttaaataaacttttgccctttaaaat 204  Q
    |||||||||||| |||| ||||||||||||| ||| ||||||||||||||| | ||||||    
T  31981451 aaattaaaaacactatgatggataaataatacgctcaaataaacttttgccatctaaaat 31981510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 31986085 - 31986119
Alignment:
Q  22 caatgagacaaagcttggtgaaggaaaatagaatg 56  Q
    |||||||||||||||||||||||||||||||||||    
T  31986085 caatgagacaaagcttggtgaaggaaaatagaatg 31986119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 22471129 - 22471074
Alignment:
Q  204 tttctcaattgttcgaatttgacctcatagtttcaattaagtgattatcgcccctc 259  Q
    ||||||||||||||||||||||| |  ||||| |||||| |||||||| |||||||    
T  22471129 tttctcaattgttcgaatttgacttgctagttgcaattatgtgattatggcccctc 22471074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 31981343 - 31981372
Alignment:
Q  17 aaatccaatgagacaaagcttggtgaagga 46  Q
    ||||||||||||||||||||||||||||||    
T  31981343 aaatccaatgagacaaagcttggtgaagga 31981372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University