View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12859_high_11 (Length: 457)
Name: NF12859_high_11
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12859_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Complemental strand, 37340660 - 37340232
Alignment:
| Q |
18 |
gtaccaagggatttaaacaagccacaaatcagaaaccaattcatctatcaaataggtaactatgtcaaactcaagttctaagccattttcaaaggcttca |
117 |
Q |
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| T |
37340660 |
gtaccaagggatttaaacaagccacaaatcagaaaccaattcatctatcaaataggtaactatgtcaagctcaagttctaagccattttcaaaggcttca |
37340561 |
T |
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| Q |
118 |
atgtcaaagtcaagccatctacccaatggagtgctcatgtccttgctaacaagctcatccaccatcacctcttcttccatgcttctaaattccaccatct |
217 |
Q |
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| T |
37340560 |
atgtcaaagtcaagccatctacccaatggagtgctcatgtccttgctaacaagctcatccaccatcacctcttcttccatgcttctaaattccaccatct |
37340461 |
T |
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| Q |
218 |
ccttgtacacttctgctaaccaacctttcctcttcactgatgccaccatgcatctaggccatgctttgcaccttgcaacaaaaacttgcctacatcttaa |
317 |
Q |
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| T |
37340460 |
ccttgtacacttctgctaaccaacctttcctcttcactgatgccaccatgcatctaggccatgctttgcaccttgtaacaaaaacttgcctacatcttaa |
37340361 |
T |
|
| Q |
318 |
ttctatgcattcacttacacagtcaaatatagctttccttttgagcttagagtattcttcatagctttccacaccagttctttgattctccaacagatca |
417 |
Q |
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| T |
37340360 |
ttctatgcattcacttacacagtcaaatatagctttccttttgagcttagagtattcttcatagctttccacaccagttctttgattctccaacagatca |
37340261 |
T |
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| Q |
418 |
aagagagttagcatcattatactgtctgt |
446 |
Q |
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| T |
37340260 |
aagagagttagcatcattatattgtctgt |
37340232 |
T |
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Back To:
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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 191
Target Start/End: Complemental strand, 46059677 - 46059599
Alignment:
| Q |
113 |
cttcaatgtcaaagtcaagccatctacccaatggagtgctcatgtccttgctaacaagctcatccaccatcacctcttc |
191 |
Q |
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||||||| ||||||||||||||| | || || |||||||||||| |||| ||||||||||||||||| || ||||| |
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| T |
46059677 |
cttcaatctcaaagtcaagccatttcccatatccagtgctcatgtcattgcagacaagctcatccaccattacatcttc |
46059599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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