View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12859_high_15 (Length: 448)
Name: NF12859_high_15
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12859_high_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 18 - 443
Target Start/End: Original strand, 8872166 - 8872591
Alignment:
| Q |
18 |
gtattgaatccttctcttgttcgcttgaaaaataatactgaggttagtattgatggggttggatttcaaggtattgctggtgcaagtgcaactgattcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8872166 |
gtattgaatccttctcttgttcgcttgaaaaataatactgaggttagtattgatggggttggatttcaaggtattgctggtgcaagtgcaactgattcaa |
8872265 |
T |
|
| Q |
118 |
ggattgaagatggtgagaaaattgatgcagtacaaaaatttggagagtctactacaaatgttgccacaagttcaaactcaaacaaagacaagaaaaatat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8872266 |
ggattgaagatggtgagaaaattgatgcagtacaaaaatttggagagtctactacaaatgttcccacaagttcaaactcaaacaaagacaagaaaaatat |
8872365 |
T |
|
| Q |
218 |
tttggctccaactcttacaatggattatattaataatataaagtttcacgttgaagaagaatcctccgattttgattatgaatcctctaaacttgatttg |
317 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8872366 |
tttggctccaactcttaccatggattatattaataatataaagtttcacgttgaagaagaatcctccgattttgattatgaatcgtctaaacttgatttg |
8872465 |
T |
|
| Q |
318 |
acacttaagctttatgagtcatctgaacttgatttgacgcttaagctttaaatagtgattttatattttgtacccattgtcactatgatttaaattcagt |
417 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8872466 |
acacttaaactttatgagtcatctgaacttgatttgacgcttaagctttaaatacagattttatattttgtacccattgtcactatgatttaaattcagt |
8872565 |
T |
|
| Q |
418 |
ttttatagttttcctttcatctcact |
443 |
Q |
| |
|
|||||||||||||||||||| ||||| |
|
|
| T |
8872566 |
ttttatagttttcctttcatgtcact |
8872591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 434
Target Start/End: Complemental strand, 8868963 - 8868544
Alignment:
| Q |
18 |
gtattgaatccttctcttgttcgcttgaaaaataatactgaggttagtattgatggggttggatttcaaggtattgctggtgcaagtgcaactgattcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8868963 |
gtattgaatccttctcttgttcgcttgaaaaataatactgaggttagtattgatggggttggatttcaaggtattggtggtgcaagtgcaactgattcaa |
8868864 |
T |
|
| Q |
118 |
ggattgaagatggtgagaaaattgatgcagtacaaaaatttggagagtctactacaaatgttgccacaagttcaaactcaaacaaagacaagaaaaatat |
217 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||| |||||||||||||| ||||||||||||||| |
|
|
| T |
8868863 |
gggttgaagatggtgagaaaattgatgcaggacaaaaatttggagagtctactaaaaatgttgtcacaggttcaaactcaaacggagacaagaaaaatat |
8868764 |
T |
|
| Q |
218 |
tttggctccaactctt---acaatggattatattaataatataaagtttcacgttgaagaagaatcctccgattttgattatgaatcctctaaacttgat |
314 |
Q |
| |
|
| ||||||||||| || || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
8868763 |
tctggctccaactgttgttactgtggattatattaataatataaagtttcatgttgaagaagaatcctccgattttgattttgagtcctctaaacttgac |
8868664 |
T |
|
| Q |
315 |
ttgacacttaagctttatgagtcatctgaacttgatttgacgcttaagctttaaatagtgattttatattttgtacccattgtcactatgatttaaattc |
414 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
8868663 |
ttgacacttaagctttatgggtcatctgaacttgatttgacgcttaagctttaaatacagattttatattttgtacccattgttgctaagatttaaattc |
8868564 |
T |
|
| Q |
415 |
agtttttatagttttccttt |
434 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
8868563 |
agtttttatagtttttcttt |
8868544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 3156592 - 3156518
Alignment:
| Q |
152 |
aaaatttggagagtctactacaaatgttgccacaagttcaaactcaaacaaagacaagaaaaatattttggctcc |
226 |
Q |
| |
|
|||||| ||||| ||| ||||||||||||| |||||||||||||||||| ||| ||| ||| |||| ||||||| |
|
|
| T |
3156592 |
aaaattaggagattcttctacaaatgttgctgcaagttcaaactcaaacatagaaaagcaaattattgtggctcc |
3156518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 3167699 - 3167746
Alignment:
| Q |
152 |
aaaatttggagagtctactacaaatgttgccacaagttcaaactcaaa |
199 |
Q |
| |
|
|||||| ||||| ||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
3167699 |
aaaattaggagattcttctacaaatgttgctacaagttcaaactcaaa |
3167746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 2023270 - 2023340
Alignment:
| Q |
156 |
tttggagagtctactacaaatgttgccacaagttcaaactcaaacaaagacaagaaaaatattttggctcc |
226 |
Q |
| |
|
|||| ||| ||| ||||||||||| | |||||||||||||||||| ||| ||||||| |||| ||||||| |
|
|
| T |
2023270 |
tttgaagattcttctacaaatgttacaacaagttcaaactcaaacctagaaaagaaaattattatggctcc |
2023340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 192
Target Start/End: Original strand, 1744995 - 1745034
Alignment:
| Q |
153 |
aaatttggagagtctactacaaatgttgccacaagttcaa |
192 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
1744995 |
aaatttggagattcttctacaaatgttgccacaagttcaa |
1745034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 23852567 - 23852616
Alignment:
| Q |
152 |
aaaatttggagagtctactacaaatgttgccacaagttcaaactcaaaca |
201 |
Q |
| |
|
|||||| ||||| ||| |||||||| |||| ||||||||||||||||||| |
|
|
| T |
23852567 |
aaaattgggagattcttctacaaatattgctacaagttcaaactcaaaca |
23852616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University