View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12859_high_18 (Length: 421)

Name: NF12859_high_18
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12859_high_18
NF12859_high_18
[»] chr3 (1 HSPs)
chr3 (162-412)||(53325164-53325413)
[»] chr1 (5 HSPs)
chr1 (162-412)||(14122445-14122694)
chr1 (18-143)||(14123917-14124042)
chr1 (322-412)||(41698399-41698489)
chr1 (322-412)||(41703993-41704083)
chr1 (367-412)||(40248556-40248601)
[»] chr7 (3 HSPs)
chr7 (169-412)||(35048771-35049012)
chr7 (166-404)||(15635878-15636115)
chr7 (22-143)||(35050957-35051078)
[»] chr4 (4 HSPs)
chr4 (162-410)||(20007672-20007921)
chr4 (18-143)||(20006324-20006449)
chr4 (359-412)||(49622526-49622579)
chr4 (322-412)||(54078461-54078551)
[»] chr5 (2 HSPs)
chr5 (293-394)||(9284809-9284910)
chr5 (322-361)||(23556713-23556752)
[»] chr2 (1 HSPs)
chr2 (285-346)||(1177994-1178055)
[»] chr6 (1 HSPs)
chr6 (38-84)||(8532270-8532316)


Alignment Details
Target: chr3 (Bit Score: 183; Significance: 7e-99; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 162 - 412
Target Start/End: Original strand, 53325164 - 53325413
Alignment:
Q  162 gactgacacatatttactctagccatacattgtgctcttgtgatgggatttggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtac 261  Q
    ||||||||||||||||||||||| ||||||||||||||| || | ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  53325164 gactgacacatatttactctagctatacattgtgctcttatggtaggatttggtctcaaaaggttctttgagttactcacatagcttcttgcacaagtac 53325263  T
Q  262 atcctagagtaaagnnnnnnnncttccatcctttgcatattttgaattgattttaacagttccaaaacccatacatctagcataactcttgtaatatttg 361  Q
    ||||||||||||||         ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53325264 atcctagagtaaagtatttttt-ttccatcctttgcattttttgaattgattttaacagttccaaaacccatacatctagcataactcttgtaatatttg 53325362  T
Q  362 gtaatttcttcttcaaaactaaatgtcatcccaatcctaggttcttcatct 412  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  53325363 gtaatttcttcttcagaattaaatgtcatcccaatcctaggttcttcatct 53325413  T

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Target: chr1 (Bit Score: 175; Significance: 4e-94; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 162 - 412
Target Start/End: Complemental strand, 14122694 - 14122445
Alignment:
Q  162 gactgacacatatttactctagccatacattgtgctcttgtgatgggatttggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtac 261  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  14122694 gactgacacatatttactctagccatacattgtgctcttatgataggatttggtttcaaaaggttctttgtgttactcacatagcttcttgcacaagtac 14122595  T
Q  262 atcctagagtaaagnnnnnnnncttccatcctttgcatattttgaattgattttaacagttccaaaacccatacatctagcataactcttgtaatatttg 361  Q
    ||||||||||||||         ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  14122594 atcctagagtaaagtatttttt-ttccatcctttgcattttttgaattgattttaacagttccaaaacccatacatctagcatagctcttataatatttg 14122496  T
Q  362 gtaatttcttcttcaaaactaaatgtcatcccaatcctaggttcttcatct 412  Q
    |||| |||||||||| || ||||||||||||||||||||| ||||||||||    
T  14122495 gtaacttcttcttcagaattaaatgtcatcccaatcctagattcttcatct 14122445  T

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Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 14124042 - 14123917
Alignment:
Q  18 ttttatttatttggacctgatttacttcaacaaaatatttttgatttcgattgaagggagctaaatttgcttaaattctctcttgtgtgccaatcccatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||| ||||||||||    
T  14124042 ttttatttatttggacctgatttacttcaacaaaatatttttgatttggattgaagggagctaaatttgcttgaattctctattgtgtgtcaatcccatc 14123943  T
Q  118 aatgatctgagatgtagaaaactcag 143  Q
    ||||||||||||||||||||||||||    
T  14123942 aatgatctgagatgtagaaaactcag 14123917  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 412
Target Start/End: Complemental strand, 41698489 - 41698399
Alignment:
Q  322 tccaaaacccatacatctagcataactcttgtaatatttggtaatttcttcttcaaaactaaatgtcatcccaatcctaggttcttcatct 412  Q
    ||||||||| ||||||||||||||| ||||||||||||||  || |||||||  | || ||||| |||| |||| | ||||||| ||||||    
T  41698489 tccaaaacctatacatctagcataattcttgtaatatttgtcaacttcttctgtagaattaaatttcatgccaaccttaggttcatcatct 41698399  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 412
Target Start/End: Complemental strand, 41704083 - 41703993
Alignment:
Q  322 tccaaaacccatacatctagcataactcttgtaatatttggtaatttcttcttcaaaactaaatgtcatcccaatcctaggttcttcatct 412  Q
    ||||||||| ||||||||||||||| ||||||||||||||  || |||||||  | || ||||| |||| |||| | ||||||| ||||||    
T  41704083 tccaaaacctatacatctagcataattcttgtaatatttgtcaacttcttctgtagaattaaatttcatgccaaccttaggttcatcatct 41703993  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 367 - 412
Target Start/End: Complemental strand, 40248601 - 40248556
Alignment:
Q  367 ttcttcttcaaaactaaatgtcatcccaatcctaggttcttcatct 412  Q
    |||||||||| | ||||||||||||||| | |||||||||||||||    
T  40248601 ttcttcttcagacctaaatgtcatcccagttctaggttcttcatct 40248556  T

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Target: chr7 (Bit Score: 172; Significance: 3e-92; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 169 - 412
Target Start/End: Complemental strand, 35049012 - 35048771
Alignment:
Q  169 acatatttactctagccatacattgtgctcttgtgatgggatttggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtacatcctag 268  Q
    |||||||||||||||||||||| ||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35049012 acatatttactctagccatacactgtgctcttatggtaggatttggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtacatcctag 35048913  T
Q  269 agtaaagnnnnnnnncttccatcctttgcatattttgaattgattttaacagttccaaaacccatacatctagcataactcttgtaatatttggtaattt 368  Q
    |||||||         ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||    
T  35048912 agtaaagtattttt--ttccatcctttgcattttttgaattgattttaacagttccaaaacccatacatctagcatagctcttgtaatatttgataactt 35048815  T
Q  369 cttcttcaaaactaaatgtcatcccaatcctaggttcttcatct 412  Q
    |||||||| |||||||||||||||||||||||||||| ||||||    
T  35048814 cttcttcagaactaaatgtcatcccaatcctaggttcctcatct 35048771  T

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Target: chr7; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 166 - 404
Target Start/End: Original strand, 15635878 - 15636115
Alignment:
Q  166 gacacatatttactctagccatacattgtgctcttgtgatgggatttggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtacatcc 265  Q
    ||||||| ||||||||||||||||||||||||||| || | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15635878 gacacatgtttactctagccatacattgtgctcttatggtagggtttggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtacatcc 15635977  T
Q  266 tagagtaaagnnnnnnnncttccatcctttgcatattttgaattgattttaacagttccaaaacccatacatctagcataactcttgt-aatatttggta 364  Q
    ||||||||||         ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15635978 tagagtaaagtattttt--ttccatcctttgcatttttttaattgattttaacagttccaaaacccatacatctagcataactcttgtaaatatttggta 15636075  T
Q  365 atttcttcttcaaaactaaatgtcatcccaatcctaggtt 404  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  15636076 atttcttcttcataactaaatgtcatcccaatcctaggtt 15636115  T

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Target: chr7; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 35051078 - 35050957
Alignment:
Q  22 atttatttggacctgatttacttcaacaaaatatttttgatttcgattgaagggagctaaatttgcttaaattctctcttgtgtgccaatcccatcaatg 121  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  35051078 atttatttggacctgatttacttcaacaaaatatttttgatttggattgaagggagctaaatttgcttgaattctctgttgtgtgccaatcccatcaatg 35050979  T
Q  122 atctgagatgtagaaaactcag 143  Q
    || |||||||||||||||||||    
T  35050978 atttgagatgtagaaaactcag 35050957  T

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Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 162 - 410
Target Start/End: Original strand, 20007672 - 20007921
Alignment:
Q  162 gactgacacatatttactctagccatacattgtgctcttgtgatgggatttggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtac 261  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  20007672 gactgacacatatttactctagccatacattgtgctcttatgataggatttggtttcaaaaggttctttgtgttactcacatagcttcttgcacaagtac 20007771  T
Q  262 atcctagagtaaag-nnnnnnnncttccatcctttgcatattttgaattgattttaacagttccaaaacccatacatctagcataactcttgtaatattt 360  Q
    ||||||||||||||          ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |    
T  20007772 atcctagagtaaagtattttttttttccatcctttgcattttttgaattgattttaacagttccaaaacccatacatctagcatagctcttataatatct 20007871  T
Q  361 ggtaatttcttcttcaaaactaaatgtcatcccaatcctaggttcttcat 410  Q
    ||||| |||||||||| || ||||||||||||||||||||| ||||||||    
T  20007872 ggtaacttcttcttcataattaaatgtcatcccaatcctagattcttcat 20007921  T

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Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 20006324 - 20006449
Alignment:
Q  18 ttttatttatttggacctgatttacttcaacaaaatatttttgatttcgattgaagggagctaaatttgcttaaattctctcttgtgtgccaatcccatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||| ||||||||||    
T  20006324 ttttatttatttggacctgatttacttcaacaaaatatttttgatttggattgaagggagctaaatttgcttgaattctctattgtgtgtcaatcccatc 20006423  T
Q  118 aatgatctgagatgtagaaaactcag 143  Q
    ||||||||||||||||||||||||||    
T  20006424 aatgatctgagatgtagaaaactcag 20006449  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 359 - 412
Target Start/End: Complemental strand, 49622579 - 49622526
Alignment:
Q  359 ttggtaatttcttcttcaaaactaaatgtcatcccaatcctaggttcttcatct 412  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||| ||||||    
T  49622579 ttggtaacttcttcttcagaactaaatgtcatcccaatcctaggttcatcatct 49622526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 412
Target Start/End: Original strand, 54078461 - 54078551
Alignment:
Q  322 tccaaaacccatacatctagcataactcttgtaatatttggtaatttcttcttcaaaactaaatgtcatcccaatcctaggttcttcatct 412  Q
    ||||||||| ||||||||||||||| ||||||||||||||  || |||||||  | || ||||| |||| |||| | ||||||| ||||||    
T  54078461 tccaaaacctatacatctagcataattcttgtaatatttgtcaacttcttctgtagaattaaatttcatgccaaccttaggttcatcatct 54078551  T

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Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 293 - 394
Target Start/End: Original strand, 9284809 - 9284910
Alignment:
Q  293 tttgcatattttgaattgattttaacagttccaaaacccatacatctagcataactcttgtaatatttggtaatttcttcttcaaaactaaatgtcatcc 392  Q
    ||||||| ||||||||| |||||| |  ||||||| |||||||||| | ||||| ||||||||||| ||||||||||||||||  |||||||||||||||    
T  9284809 tttgcattttttgaatttattttaccgattccaaagcccatacatcaaacataattcttgtaatatgtggtaatttcttcttcggaactaaatgtcatcc 9284908  T
Q  393 ca 394  Q
    ||    
T  9284909 ca 9284910  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 361
Target Start/End: Complemental strand, 23556752 - 23556713
Alignment:
Q  322 tccaaaacccatacatctagcataactcttgtaatatttg 361  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  23556752 tccaaaacctatacatctagcataattcttgtaatatttg 23556713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 346
Target Start/End: Complemental strand, 1178055 - 1177994
Alignment:
Q  285 ttccatcctttgcatattttgaattgattttaacagttccaaaacccatacatctagcataa 346  Q
    ||||||| |||||||  ||| ||||||||||| || |||||||||||||||||| |||||||    
T  1178055 ttccatcatttgcattcttttaattgattttaccaattccaaaacccatacatcaagcataa 1177994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 8532270 - 8532316
Alignment:
Q  38 tttacttcaacaaaatatttttgatttcgattgaagggagctaaatt 84  Q
    ||||||||| |||||| || ||||||| |||||||||||||||||||    
T  8532270 tttacttcagcaaaatgttcttgatttggattgaagggagctaaatt 8532316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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