View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12859_high_20 (Length: 407)
Name: NF12859_high_20
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12859_high_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 389
Target Start/End: Original strand, 16699279 - 16699650
Alignment:
| Q |
13 |
gagatagacaacgtgtagtataacattgtggaaggggaccgcagggatagacaagaagaaggaattgaactcaggctacgaattgcagatgccatgattc |
112 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16699279 |
gagatagacaatgtgtagtataacattgtggaaggggaccgcagggatagacaagaagaaggaattgaactcaggctacgaattgcagatgccatgattc |
16699378 |
T |
|
| Q |
113 |
catgaagtatgatgtcaatccaaagtattgaatccaagaaccatgcgaggctcaccagtctctacaaaattggtaattacaaaataaaatcaaaagagag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16699379 |
catgaagtatgatgtcaatccaaagtattgaatccaagaaccatgcgaggcttgcaagtctctataaaattggtaattacaaaataaaatcaaaagagag |
16699478 |
T |
|
| Q |
213 |
aatatgtcctgcatgaagggtaaccaagatattgcaatcataaggaactctattttcattgtaatataagtgtagtacaatcacaataaaaatttaatat |
312 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
16699479 |
aatatgtcctgcat-----gtaaccaagatattgcaatcataaggaactctattttcattgtaatataagtgtagtacaatcacaataaaaatttaacat |
16699573 |
T |
|
| Q |
313 |
gcaaattgattaatccattcttcattcgtcagagaataaaaatggtatcaagacattttgaactgatattgcaatat |
389 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16699574 |
ggaaattgattaatccattcttcattcctcagagaataaaaatggtatcaagacattttgaactgatattgcaatat |
16699650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 389
Target Start/End: Original strand, 17673515 - 17673886
Alignment:
| Q |
13 |
gagatagacaacgtgtagtataacattgtggaaggggaccgcagggatagacaagaagaaggaattgaactcaggctacgaattgcagatgccatgattc |
112 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17673515 |
gagatagacaatgtgtagtataacattgtggaaggggaccgcagggatagacaagaagaaggaattgaactcaggctacgaattgcagatgccatgattc |
17673614 |
T |
|
| Q |
113 |
catgaagtatgatgtcaatccaaagtattgaatccaagaaccatgcgaggctcaccagtctctacaaaattggtaattacaaaataaaatcaaaagagag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
17673615 |
catgaagtatgatgtcaatccaaagtattgaatccaagaaccatgcgaggcttgcaagtctctataaaattggtaattacaaaataaaatcaaaagagag |
17673714 |
T |
|
| Q |
213 |
aatatgtcctgcatgaagggtaaccaagatattgcaatcataaggaactctattttcattgtaatataagtgtagtacaatcacaataaaaatttaatat |
312 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
17673715 |
aatatgtcctgcat-----gtaaccaagatattgcaatcataaggaactctattttcattgtaatataagtgtagtacaatcacaataaaaatttaacat |
17673809 |
T |
|
| Q |
313 |
gcaaattgattaatccattcttcattcgtcagagaataaaaatggtatcaagacattttgaactgatattgcaatat |
389 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17673810 |
ggaaattgattaatccattcttcattcctcagagaataaaaatggtatcaagacattttgaactgatattgcaatat |
17673886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 13715978 - 13716222
Alignment:
| Q |
13 |
gagatagacaacgtgtagtataacattgtggaaggggaccgcagggatagacaagaagaaggaattgaactcaggctacgaattgcagatgccatgattc |
112 |
Q |
| |
|
||||||||||| | |||| |||||||| ||| ||||||| ||||||||||||||||||| ||||||||||| |||| ||||||||||||| | |
|
|
| T |
13715978 |
gagatagacaatatatagtctaacattgcggatggggaccccagggatagacaagaagaacgaattgaactcgggcttcgaattgcagatg--------c |
13716069 |
T |
|
| Q |
113 |
catgaagtatgatgtcaatccaaagtattgaatccaagaaccatgcgaggctc---------accagtctctacaaaattggtaattacaaaa---taaa |
200 |
Q |
| |
|
|||||||||| | |||| | ||||| ||||||||||| ||||| ||||||| ||||||||||||||| || |||| | |||| |||| |
|
|
| T |
13716070 |
catgaagtataacaccaatgctaagtactgaatccaagagccatgggaggctctcacccatagccagtctctacaaaa-tgataataaaaaaatattaaa |
13716168 |
T |
|
| Q |
201 |
atcaaaagagagaatatgtcctgcatgaagggtaaccaagatattgcaatcata |
254 |
Q |
| |
|
| |||||||||||||||| |||||||||||||||| | |||||||||||||||| |
|
|
| T |
13716169 |
aacaaaagagagaatatgccctgcatgaagggtaatctagatattgcaatcata |
13716222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 299 - 376
Target Start/End: Original strand, 13716844 - 13716921
Alignment:
| Q |
299 |
taaaaatttaatatgcaaattgattaatccattcttcattcgtcagagaataaaaatggtatcaagacattttgaact |
376 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| |||||| | |||| |||||||||||| |||||||||||||| |
|
|
| T |
13716844 |
taaaaatttcatatgcaaattgattaaaccattcgtcattccttggagattaaaaatggtatttagacattttgaact |
13716921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University