View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12859_high_27 (Length: 353)
Name: NF12859_high_27
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12859_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 12 - 336
Target Start/End: Complemental strand, 30645353 - 30645023
Alignment:
| Q |
12 |
acagaaacttaagccacttgattctttttagttttcatattaggtattatgataatcattgacataatttagaacttatcacaggttgcaacagccaatg |
111 |
Q |
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| T |
30645353 |
acagaaacttaagccacttgattctttttagttttcatattaggtattatgataatcattgacataatttagaacttatcacaggttgcaacagccaatg |
30645254 |
T |
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| Q |
112 |
tattcttaatctttagacaagcataagcttatacgtattttatgtctttgagagttcctataagcaattacaacttg------ccaaacctgttatgtga |
205 |
Q |
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| T |
30645253 |
tattcttaatctttagacaagcataagcttatacgtattttatgtctttgagagttcctataagcaattacaacttgccaatgccaaacctgttatgtga |
30645154 |
T |
|
| Q |
206 |
ttgcaagaaaactaaaaataaacaaatgtgtgcaattgatgtacgtgataagtgtgccattcttatgacatgttacttgttttgacataaacctgttatg |
305 |
Q |
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| T |
30645153 |
ttgcaagaaaactaaaaataaacaaatgtgtgcaattgatgtacgtgataagtgtgccattcttatgacatgttacttgttttgacataaacctgttatg |
30645054 |
T |
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| Q |
306 |
tttctgagttgtatacgtttgagataacact |
336 |
Q |
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| T |
30645053 |
tttctgagttgtatacgtttgagataacact |
30645023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 12445143 - 12445192
Alignment:
| Q |
12 |
acagaaacttaagccacttgattctttttagttttcatattaggtattat |
61 |
Q |
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||||||||| ||| ||||||||| ||||||||||||||||||| |||||| |
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| T |
12445143 |
acagaaactaaagtcacttgattttttttagttttcatattagctattat |
12445192 |
T |
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