View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12859_high_28 (Length: 349)
Name: NF12859_high_28
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12859_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 5219945 - 5220267
Alignment:
| Q |
19 |
gtcactctgtacatatatttctcacatgtatatctcccaggctattccacaatgagaaataaaaaccactaactaatttttacacaaagatatcaagtgg |
118 |
Q |
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| T |
5219945 |
gtcactctgtacatatatttctcacatgtatatatcccaggctattccacaatgagaaataaaaaccactaactaatttttacacaaagaaatcaagtgg |
5220044 |
T |
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| Q |
119 |
tatgagcagtaagtcttataggaaatgcttttgttgtatagaagtcgcttgaatttaggcttagtcacgtttaatttgatataagcacaacnnnnnnnag |
218 |
Q |
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| T |
5220045 |
tatgagcagcaagtcttataggaaatgcttttgttatatagaagtcgcttgagtttaggcttagtcacgtttaatttgatataagcacaactttttttag |
5220144 |
T |
|
| Q |
219 |
aatcactattactattttaatatg--ttgagtttaaaaattgttgtgttttagcattaaaatcacttaagaattgctccaaatagagggaggaagcatca |
316 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5220145 |
aatcactattactatattaatatgttttgagtttaaaaattgttgtgttttagcattaaaatcacttaagaattgctccaaatagagggaggaagcatca |
5220244 |
T |
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| Q |
317 |
cataaaactaacctttccctttg |
339 |
Q |
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||||||||||||||||||||||| |
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| T |
5220245 |
cataaaactaacctttccctttg |
5220267 |
T |
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