View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12859_high_30 (Length: 303)

Name: NF12859_high_30
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12859_high_30
NF12859_high_30
[»] chr3 (4 HSPs)
chr3 (1-281)||(36036661-36036938)
chr3 (111-181)||(9155053-9155123)
chr3 (111-167)||(9158235-9158291)
chr3 (109-181)||(50096907-50096978)
[»] chr8 (9 HSPs)
chr8 (1-165)||(587449-587612)
chr8 (1-165)||(626310-626473)
chr8 (84-227)||(5828248-5828391)
chr8 (109-165)||(41778805-41778861)
chr8 (104-167)||(13097147-13097210)
chr8 (104-165)||(44008410-44008471)
chr8 (91-184)||(12820690-12820783)
chr8 (171-230)||(9467373-9467432)
chr8 (128-166)||(14627590-14627628)
[»] chr6 (15 HSPs)
chr6 (1-181)||(20189233-20189412)
chr6 (1-181)||(22146579-22146758)
chr6 (6-181)||(28117973-28118148)
chr6 (84-203)||(12747030-12747149)
chr6 (84-203)||(28894259-28894378)
chr6 (1-165)||(9313605-9313768)
chr6 (85-181)||(15578718-15578814)
chr6 (89-181)||(20527208-20527300)
chr6 (1-107)||(16731481-16731588)
chr6 (85-181)||(12983427-12983523)
chr6 (109-167)||(16883802-16883860)
chr6 (109-181)||(11183883-11183955)
chr6 (85-165)||(12980556-12980636)
chr6 (84-136)||(35026979-35027031)
chr6 (171-227)||(14790808-14790864)
[»] scaffold0043 (2 HSPs)
scaffold0043 (84-203)||(13813-13932)
scaffold0043 (84-203)||(11470-11589)
[»] scaffold0134 (1 HSPs)
scaffold0134 (1-165)||(7372-7536)
[»] chr7 (11 HSPs)
chr7 (1-181)||(22083246-22083426)
chr7 (84-197)||(17152176-17152289)
chr7 (84-203)||(16547224-16547343)
chr7 (84-203)||(16618319-16618438)
chr7 (11-155)||(6214132-6214275)
chr7 (109-181)||(23313307-23313379)
chr7 (84-227)||(38431613-38431757)
chr7 (109-165)||(23108114-23108171)
chr7 (84-136)||(6964507-6964559)
chr7 (171-227)||(6967337-6967393)
chr7 (171-227)||(17866353-17866409)
[»] chr5 (7 HSPs)
chr5 (1-181)||(17944756-17944936)
chr5 (90-196)||(9690989-9691095)
chr5 (84-181)||(35432285-35432382)
chr5 (111-203)||(33320703-33320795)
chr5 (84-229)||(2499760-2499906)
chr5 (84-141)||(26338204-26338261)
chr5 (171-227)||(34406038-34406094)
[»] chr2 (3 HSPs)
chr2 (17-203)||(13572065-13572254)
chr2 (1-167)||(30719910-30720076)
chr2 (85-136)||(32575776-32575827)
[»] scaffold0045 (1 HSPs)
scaffold0045 (84-203)||(90322-90441)
[»] chr4 (3 HSPs)
chr4 (1-165)||(7394690-7394854)
chr4 (1-165)||(24605067-24605230)
chr4 (84-189)||(37176858-37176963)
[»] scaffold0401 (1 HSPs)
scaffold0401 (84-227)||(4480-4623)
[»] scaffold0083 (1 HSPs)
scaffold0083 (84-203)||(42822-42941)
[»] chr1 (11 HSPs)
chr1 (85-181)||(49148000-49148096)
chr1 (112-181)||(22447996-22448065)
chr1 (112-181)||(22453230-22453299)
chr1 (109-165)||(8435362-8435418)
chr1 (85-181)||(22456540-22456636)
chr1 (109-181)||(17618909-17618981)
chr1 (109-181)||(34066471-34066543)
chr1 (104-155)||(16190251-16190302)
chr1 (171-228)||(10765109-10765166)
chr1 (171-227)||(13493452-13493508)
chr1 (109-141)||(23990221-23990253)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 36036938 - 36036661
Alignment:
Q  1 agaggattcaaaagcttaatcacctattttccatataatttccaaccagttttatttacttgcaatttattatttttagcactaaatccaactgcctagg 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36036938 agaggattcaaaagcttaatcacctgttttccatataatttccaaccagttttatttacttgcaatttattatttttagcactaaatccaactgcctagg 36036839  T
Q  101 acaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaactttattactacttcgataac- 199  Q
     |||||| |||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  36036838 gcaaccattgaatttaatacataatttattttaacgcttttgttgaatagaaattgaaacagtccctatagatataaactttattactacttcgataact 36036739  T
Q  200 ttttaacagacttaccaaatatctatcacctcctaccaggggacttatgtaaagttactaactaagtaacgtgcactccctc 281  Q
    |||| ||| |||| |||||||||||||||||||||| |||||||||||||||||||    ||||||||||||||||||||||    
T  36036738 ttttgacacacttgccaaatatctatcacctcctactaggggacttatgtaaagtt----actaagtaacgtgcactccctc 36036661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 9155053 - 9155123
Alignment:
Q  111 aatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaactt 181  Q
    ||||||||||||| || ||||||||| ||||| |||||||||||||||||||||||| | |||| ||||||    
T  9155053 aatttaatacatccttgattttaacgtttttgccgagtagaaattgaaacagtccctgtggatacgaactt 9155123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 9158235 - 9158291
Alignment:
Q  111 aatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccct 167  Q
    ||||||||||||| || ||||||||| ||||| ||||||||||||||||||||||||    
T  9158235 aatttaatacatccttgattttaacgtttttgccgagtagaaattgaaacagtccct 9158291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 50096907 - 50096978
Alignment:
Q  109 tgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaactt 181  Q
    ||||||||||||||| |||||||||||  ||||  |||||||||||||||||||||||| | |||| ||||||    
T  50096907 tgaatttaatacatcctttattttaacttttttc-cgagtagaaattgaaacagtccctgtggatacgaactt 50096978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 587449 - 587612
Alignment:
Q  1 agaggattcaaaagcttaatcacctattttccatataatttccaaccagttttatttacttgcaatttattatttttagcactaaatccaactgcctagg 100  Q
    ||||||||| ||||||| |||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  587449 agaggattcgaaagcttgatcatctgttttccacataatttccaaccagttttatttacttgcaatttattatttttagcacttaatccaactgcctagg 587548  T
Q  101 acaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtcc 165  Q
      |||| || | ||||| ||||| ||  ||||||||  |||||||||||||||||||||||||||    
T  587549 gtaacc-ataattttaacacatccttagttttaacgtctttgtcgagtagaaattgaaacagtcc 587612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 626473 - 626310
Alignment:
Q  1 agaggattcaaaagcttaatcacctattttccatataatttccaaccagttttatttacttgcaatttattatttttagcactaaatccaactgcctagg 100  Q
    ||||||||| ||||||| |||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  626473 agaggattcgaaagcttgatcatctgttttccacataatttccaaccagttttatttacttgcaatttattatttttagcacttaatccaactgcctagg 626374  T
Q  101 acaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtcc 165  Q
      |||| || | ||||| ||||| ||  ||||||||  | || ||||||||||||||||||||||    
T  626373 gtaacc-ataattttaacacatccttagttttaacgtctatgacgagtagaaattgaaacagtcc 626310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 84 - 227
Target Start/End: Original strand, 5828248 - 5828391
Alignment:
Q  84 aaatccaactgcctaggacaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaacttta 183  Q
    ||||||||||||||||| ||||| || |||||||| |||| |||||||||||||||||| |||||||||||||||||||||| | | |||| ||||||||    
T  5828248 aaatccaactgcctagggcaacccataaatttaatgcatcctttattttaacgcttttgacgagtagaaattgaaacagtccatgtggatacgaacttta 5828347  T
Q  184 ttactacttcgataacttttaacagacttaccaaatatctatca 227  Q
     ||||||||||||| |||||   | |||| ||||||||||||||    
T  5828348 ctactacttcgatagcttttggtacacttgccaaatatctatca 5828391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 41778861 - 41778805
Alignment:
Q  109 tgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtcc 165  Q
    ||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||    
T  41778861 tgaatttaatacatcttttattttaacgtttttgccgagtagaaattgaaacagtcc 41778805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 104 - 167
Target Start/End: Original strand, 13097147 - 13097210
Alignment:
Q  104 accaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccct 167  Q
    |||| ||||||||||||||| |||||||||||| ||||| |||||||||||||||| |||||||    
T  13097147 accattgaatttaatacatcctttattttaacgtttttgccgagtagaaattgaaatagtccct 13097210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 44008410 - 44008471
Alignment:
Q  104 accaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtcc 165  Q
    |||| |||||||||||||| ||||||||||||| ||||| | ||||||||||||||||||||    
T  44008410 accattgaatttaatacataatttattttaacgtttttgccaagtagaaattgaaacagtcc 44008471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 184
Target Start/End: Complemental strand, 12820783 - 12820690
Alignment:
Q  91 actgcctaggacaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaactttat 184  Q
    |||||||||| ||||| || || |||| ||||| |||||||||||   |||| |||||||||||||||||||||| | | |||| |||||||||    
T  12820783 actgcctagggcaacccataaacttaacacatcctttattttaacatctttgccgagtagaaattgaaacagtccatgtggatacgaactttat 12820690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 9467373 - 9467432
Alignment:
Q  171 gatatgaactttattactacttcgataacttttaacagacttaccaaatatctatcacct 230  Q
    |||| |||||||||||||||||||||| |||||   | |||| |||||||||||||||||    
T  9467373 gatacgaactttattactacttcgatagcttttggtacacttgccaaatatctatcacct 9467432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 166
Target Start/End: Original strand, 14627590 - 14627628
Alignment:
Q  128 attttaacgcttttgtcgagtagaaattgaaacagtccc 166  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  14627590 attttaacacttttgtcgagtagaaattgaaacactccc 14627628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 20189412 - 20189233
Alignment:
Q  1 agaggattcaaaagcttaatcacctattttccatataatttccaaccagttttatttacttgcaatttattatttttagcactaaatccaactgcctagg 100  Q
    ||||||||| ||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||    
T  20189412 agaggattcgaatacttaatcatctattttccatataatttccaaccagttttatttacttgcaatttattatttttagcacttaacccaactgtctagg 20189313  T
Q  101 acaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaactt 181  Q
      |||| |  | ||||| ||||| ||||||||||| ||||||| ||||| |||||||||||||  ||||||||| ||||||    
T  20189312 gaaacc-acaattttaacacatcctttattttaactcttttgtggagtataaattgaaacagtttctatagatacgaactt 20189233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 22146579 - 22146758
Alignment:
Q  1 agaggattcaaaagcttaatcacctattttccatataatttccaaccagttttatttacttgcaatttattatttttagcactaaatccaactgcctagg 100  Q
    ||||||||| ||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||    
T  22146579 agaggattcgaatacttaatcatctattttccatataatttccaaccagttttatttacttgcaatttattatttttagcacttaacccaactgtctagg 22146678  T
Q  101 acaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaactt 181  Q
      |||| |  | ||||| ||||| ||||||||||| ||||||| ||||| |||||||||||||  ||||||||| ||||||    
T  22146679 gaaacc-acaattttaacacatcctttattttaactcttttgtggagtataaattgaaacagtttctatagatacgaactt 22146758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 6 - 181
Target Start/End: Original strand, 28117973 - 28118148
Alignment:
Q  6 attcaaaagcttaatcacctattttccatataat-ttccaaccagttttatttacttgcaatttattattttta-gcactaaatccaactgcctaggaca 103  Q
    |||| |||||||||||| || |||||||||| || ||||||||||||| ||||||||||||||||||||||||| ||| | ||  |||||||||||| ||    
T  28117973 attcgaaagcttaatcatctgttttccatattatcttccaaccagttt-atttacttgcaatttattatttttatgcaatcaactcaactgcctagggca 28118071  T
Q  104 accaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaactt 181  Q
     ||| ||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||| | |||| ||||||    
T  28118072 -ccattgaatttaatatatcctttattttaacgcttttgccgagtagaaattgaaacagtccctgtggatacgaactt 28118148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 84 - 203
Target Start/End: Original strand, 12747030 - 12747149
Alignment:
Q  84 aaatccaactgcctaggacaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaacttta 183  Q
    ||||||||||||||||| ||||| || ||||||||||||| |||||||||||||||||| |||||||||||||||||||||| | | |||| ||||||||    
T  12747030 aaatccaactgcctagggcaacccataaatttaatacatcctttattttaacgcttttgccgagtagaaattgaaacagtccttgtggatacgaacttta 12747129  T
Q  184 ttactacttcgataactttt 203  Q
    |||||||||||||| |||||    
T  12747130 ttactacttcgatagctttt 12747149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 84 - 203
Target Start/End: Complemental strand, 28894378 - 28894259
Alignment:
Q  84 aaatccaactgcctaggacaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaacttta 183  Q
    ||||| ||||||||||| ||||| || ||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| | | |||| ||||||||    
T  28894378 aaatctaactgcctagggcaacccataaatttaatacatcctttattttaacgtttttgccgagtagaaattgaaacagtccatgtggatacgaacttta 28894279  T
Q  184 ttactacttcgataactttt 203  Q
    |||||||||||||| |||||    
T  28894278 ttactacttcgatagctttt 28894259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 9313768 - 9313605
Alignment:
Q  1 agaggattcaaaagcttaatcacctattttccatataat-ttccaaccagttttatttacttgcaatttattattttta-gcactaaatccaactgccta 98  Q
    ||||||||| ||||||||||||  | |||||||||| || ||||||||| ||| ||||||||||||||||||||||||| ||| | ||  ||||||||||    
T  9313768 agaggattcgaaagcttaatcatatgttttccatattatcttccaaccaattt-atttacttgcaatttattatttttatgcaatcaactcaactgccta 9313670  T
Q  99 ggacaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtcc 165  Q
    || |  ||| ||||||||||| ||| ||||||||||||||||||  |||||||||||||||||||||    
T  9313669 gggc--ccattgaatttaatatatcctttattttaacgcttttgctgagtagaaattgaaacagtcc 9313605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 15578814 - 15578718
Alignment:
Q  85 aatccaactgcctaggacaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaactt 181  Q
    |||||||||||||||| ||||| || ||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||| |||||| ||||||    
T  15578814 aatccaactgcctagggcaacccataaatttaatacatcctttattttaacgcttttgccgagtagaaattgaaatagtccctgtagatacgaactt 15578718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 89 - 181
Target Start/End: Complemental strand, 20527300 - 20527208
Alignment:
Q  89 caactgcctaggacaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaactt 181  Q
    |||||||||||| |||||  ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| | |||| ||||||    
T  20527300 caactgcctagggcaacctttgaatttaatacatcatttattttaacgcttttatcgagtagaaatcgaaacagtccctgtggatacgaactt 20527208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 16731481 - 16731588
Alignment:
Q  1 agaggattcaaaagcttaatcacctattttccatataatttccaaccagtttt-atttacttgcaatttattatttttagcactaaatccaactgcctag 99  Q
    |||||||||||||||||||||| || |||| |||||||| |||||| | |||| |||||||||||||||||||||||| ||| | ||| |||| ||||||    
T  16731481 agaggattcaaaagcttaatcatctgtttttcatataatctccaacaattttttatttacttgcaatttattatttttcgcatttaatacaacagcctag 16731580  T
Q  100 gacaacca 107  Q
    | ||||||    
T  16731581 ggcaacca 16731588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 12983523 - 12983427
Alignment:
Q  85 aatccaactgcctaggacaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaactt 181  Q
    |||||||||||||||| ||||   ||||||||||||||| |||||||||||| |||||  |||||||||||||||||| |||| | |||| ||||||    
T  12983523 aatccaactgcctagggcaacatttgaatttaatacatcctttattttaacgtttttgctgagtagaaattgaaacagcccctgtggatacgaactt 12983427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 16883802 - 16883860
Alignment:
Q  109 tgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccct 167  Q
    ||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||    
T  16883802 tgaatttaatacatcctttattttaacgcttttaccgagtagaaattgaaacagtccct 16883860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 11183955 - 11183883
Alignment:
Q  109 tgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaactt 181  Q
    ||||||||||||||| |||||||||||| ||||  | |||||||||||||||||||||| | |||||||||||    
T  11183955 tgaatttaatacatcctttattttaacgttttttccaagtagaaattgaaacagtccctgtggatatgaactt 11183883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 165
Target Start/End: Complemental strand, 12980636 - 12980556
Alignment:
Q  85 aatccaactgcctaggacaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtcc 165  Q
    |||||||||||||||| ||||    |||||||||||||| |||||||||||| |||||  |||||||||||||||||||||    
T  12980636 aatccaactgcctagggcaactttagaatttaatacatcctttattttaacgtttttgctgagtagaaattgaaacagtcc 12980556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 35027031 - 35026979
Alignment:
Q  84 aaatccaactgcctaggacaaccaatgaatttaatacatcatttattttaacg 136  Q
    ||||||||||||||||| ||||| || ||||||||||||| ||||||||||||    
T  35027031 aaatccaactgcctagggcaacccataaatttaatacatcctttattttaacg 35026979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 14790808 - 14790864
Alignment:
Q  171 gatatgaactttattactacttcgataacttttaacagacttaccaaatatctatca 227  Q
    |||| |||||||||||||||||||||| |||||   | |||| ||||||||||||||    
T  14790808 gatacgaactttattactacttcgatagcttttggtacacttgccaaatatctatca 14790864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 84 - 203
Target Start/End: Original strand, 13813 - 13932
Alignment:
Q  84 aaatccaactgcctaggacaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaacttta 183  Q
    ||||||||||||||||| ||||| || ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| | |||| ||||||||    
T  13813 aaatccaactgcctagggcaacccatcaatttaatacatcctttattttaacgcttttgccgagtagaaattgaaacagtccctgtggatacgaacttta 13912  T
Q  184 ttactacttcgataactttt 203  Q
    |||||||||||||| |||||    
T  13913 ttactacttcgatagctttt 13932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 84 - 203
Target Start/End: Original strand, 11470 - 11589
Alignment:
Q  84 aaatccaactgcctaggacaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaacttta 183  Q
    |||||||||||||||||  |||| || ||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||| | |||| ||||||||    
T  11470 aaatccaactgcctagggaaacccataaatttaatacatcctttattttaacgcttttgccgagtataaattgaaacagtccctgtggatacgaacttta 11569  T
Q  184 ttactacttcgataactttt 203  Q
    ||||| |||||||| |||||    
T  11570 ttactgcttcgatagctttt 11589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 7372 - 7536
Alignment:
Q  1 agaggattcaaaagcttaatcacctattttccatataat-ttccaaccagttttatttacttgcaatttattattttta-gcactaaatccaactgccta 98  Q
    ||||||||| |||| ||||||| || |||||||||| || ||||||||||||| ||||||||||||||||||||||||| ||| | ||  ||||||||||    
T  7372 agaggattcgaaagtttaatcatctgttttccatattatcttccaaccagttt-atttacttgcaatttattatttttatgcaatcaactcaactgccta 7470  T
Q  99 ggacaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtcc 165  Q
    || || ||| ||||||||||| ||| |||||||||||||||||  ||||||||||||||||||||||    
T  7471 gggca-ccattgaatttaatatatcctttattttaacgctttttccgagtagaaattgaaacagtcc 7536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 22083426 - 22083246
Alignment:
Q  1 agaggattcaaaagcttaatcacctattttccatataat-ttccaaccagttttatttacttgcaatttattattttta-gcactaaatccaactgccta 98  Q
    ||||||||| ||||||||||||  | |||||||||| || || |||||||||| ||||||||||||||||||||||||| ||| | ||  ||||||||||    
T  22083426 agaggattcgaaagcttaatcatttgttttccatattatctttcaaccagttt-atttacttgcaatttattatttttatgcaatcaactcaactgccta 22083328  T
Q  99 ggacaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaactt 181  Q
    || || ||| ||||||||||| ||| |||||||||| ||||||| |||||||||||||||||||||||| | |||| ||||||    
T  22083327 gggca-ccattgaatttaatatatcctttattttaatgcttttgccgagtagaaattgaaacagtccctgtggatacgaactt 22083246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 84 - 197
Target Start/End: Original strand, 17152176 - 17152289
Alignment:
Q  84 aaatccaactgcctaggacaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaacttta 183  Q
    ||||||||||||||||| ||||| || ||||||||||||| |||||||||||||||||| ||||||||||||||||||||| || | ||||  |||||||    
T  17152176 aaatccaactgcctagggcaacccataaatttaatacatcctttattttaacgcttttgccgagtagaaattgaaacagtctctgtggatacaaacttta 17152275  T
Q  184 ttactacttcgata 197  Q
    ||||||||||||||    
T  17152276 ttactacttcgata 17152289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 84 - 203
Target Start/End: Original strand, 16547224 - 16547343
Alignment:
Q  84 aaatccaactgcctaggacaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaacttta 183  Q
    ||||||||||||||||| |||||  | ||||||||||||| |||||||||||||||||| |||||||||||||||||| ||| | | |||| ||||||||    
T  16547224 aaatccaactgcctagggcaacccttaaatttaatacatcctttattttaacgcttttgccgagtagaaattgaaacaatccttgtggatacgaacttta 16547323  T
Q  184 ttactacttcgataactttt 203  Q
    |||||||||||||| |||||    
T  16547324 ttactacttcgatagctttt 16547343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 84 - 203
Target Start/End: Complemental strand, 16618438 - 16618319
Alignment:
Q  84 aaatccaactgcctaggacaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaacttta 183  Q
    ||||||||||||||||| |||||  | ||||||||||||| |||||||||||||||||| |||||||||||||||||| ||| | | |||| ||||||||    
T  16618438 aaatccaactgcctagggcaacccttaaatttaatacatcctttattttaacgcttttgccgagtagaaattgaaacaatccttgtggatacgaacttta 16618339  T
Q  184 ttactacttcgataactttt 203  Q
    |||||||||||||| |||||    
T  16618338 ttactacttcgatagctttt 16618319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 6214275 - 6214132
Alignment:
Q  11 aaagcttaatcacctattttccatataatttccaaccagttttattt-acttgcaatttattatttttagcactaaatccaactgcctaggacaaccaat 109  Q
    |||||||||||| || |||||||| ||||||||||||||||| |||| |||||||||||| ||||||||||| | || || ||||| |||| |||||  |    
T  6214275 aaagcttaatcatctgttttccatttaatttccaaccagtttaattttacttgcaatttactatttttagcatttaaccccactgcttagggcaacc--t 6214178  T
Q  110 gaatttaatacatcatttattttaacgcttttgtcgagtagaaatt 155  Q
    |||||||||||||  ||||||||||| |||||||||||||||||||    
T  6214177 gaatttaatacattctttattttaacacttttgtcgagtagaaatt 6214132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 23313379 - 23313307
Alignment:
Q  109 tgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaactt 181  Q
    ||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||| | |||||||||||    
T  23313379 tgaatttaatacatcctttattttaacgcttatgccgagtagaaattgaaacagtccctgtggatatgaactt 23313307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 227
Target Start/End: Original strand, 38431613 - 38431757
Alignment:
Q  84 aaatccaactgcctaggacaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattga-aacagtccctatagatatgaacttt 182  Q
    ||||||||||||||||| ||||| || |||||| |||||| |||||||||||    |||   |||||||||| | ||| ||||  || |||| |||||||    
T  38431613 aaatccaactgcctagggcaacccataaatttactacatcctttattttaactaacttgctaagtagaaattaacaacggtcctcatggatacgaacttt 38431712  T
Q  183 attactacttcgataacttttaacagacttaccaaatatctatca 227  Q
    ||||||||||||||| |||||   | |||| ||||||||||||||    
T  38431713 attactacttcgatagcttttggtacactttccaaatatctatca 38431757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 23108114 - 23108171
Alignment:
Q  109 tgaatttaatacatcattt-attttaacgcttttgtcgagtagaaattgaaacagtcc 165  Q
    |||||| |||||||| ||| ||||||| ||||||||||||||||||||||||||||||    
T  23108114 tgaattaaatacatccttttattttaaggcttttgtcgagtagaaattgaaacagtcc 23108171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 6964507 - 6964559
Alignment:
Q  84 aaatccaactgcctaggacaaccaatgaatttaatacatcatttattttaacg 136  Q
    |||||||||| |||||| ||||| || |||||| |||||| ||||||||||||    
T  6964507 aaatccaactacctagggcaacccataaatttactacatcctttattttaacg 6964559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 6967337 - 6967393
Alignment:
Q  171 gatatgaactttattactacttcgataacttttaacagacttaccaaatatctatca 227  Q
    |||| |||||||||||||||||||||| |||||   | |||| ||||||||||||||    
T  6967337 gatacgaactttattactacttcgatagcttttggtacacttgccaaatatctatca 6967393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 17866409 - 17866353
Alignment:
Q  171 gatatgaactttattactacttcgataacttttaacagacttaccaaatatctatca 227  Q
    |||| |||||||||||||||||||||| |||||   | |||| ||||||||||||||    
T  17866409 gatacgaactttattactacttcgatagcttttggtacacttgccaaatatctatca 17866353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 17944756 - 17944936
Alignment:
Q  1 agaggattcaaaagcttaatcacctattttccatataat-ttccaaccagttttatttacttgcaatttattattttta-gcactaaatccaactgccta 98  Q
    ||||||||| |||||||||||| || |||||||||| || ||||||| ||||| ||||||||||||||||||||||||| ||| | ||  ||||||||||    
T  17944756 agaggattcgaaagcttaatcatctgttttccatattatcttccaactagttt-atttacttgcaatttattatttttatgcaatcaactcaactgccta 17944854  T
Q  99 ggacaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaactt 181  Q
    || || ||| ||||||||||| ||| |||||||||| ||||||| ||||||||||||||||||||| || | |||| ||||||    
T  17944855 gggca-ccattgaatttaatatatcctttattttaatgcttttgccgagtagaaattgaaacagtctctgtggatacgaactt 17944936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 90 - 196
Target Start/End: Original strand, 9690989 - 9691095
Alignment:
Q  90 aactgcctaggacaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaactttattacta 189  Q
    ||||||||||| ||||| || ||||||||||||| |||||||||||||||||| |||||||||||||||||| || || | |||| ||||||||||||||    
T  9690989 aactgcctagggcaacccataaatttaatacatcctttattttaacgcttttgccgagtagaaattgaaacaatctctgtggatacgaactttattacta 9691088  T
Q  190 cttcgat 196  Q
    |||||||    
T  9691089 cttcgat 9691095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 84 - 181
Target Start/End: Complemental strand, 35432382 - 35432285
Alignment:
Q  84 aaatccaactgcctaggacaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaactt 181  Q
    |||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||| ||||||    
T  35432382 aaatccaattgcctagggcaacccataaatttaatacatcatttattttaacgcttttgtcgagtaaaaattgaaacagtccctgtggatacgaactt 35432285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 111 - 203
Target Start/End: Complemental strand, 33320795 - 33320703
Alignment:
Q  111 aatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaactttattactacttcgataactttt 203  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||| | |||| ||||||||||| |||||||||| |||||    
T  33320795 aatttaatacatcctttattttaacgcttttgccgagtagaaattgaagcagtccctgtggatacgaactttattattacttcgatagctttt 33320703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 229
Target Start/End: Complemental strand, 2499906 - 2499760
Alignment:
Q  84 aaatccaactgcctaggacaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattga-aacagtccctatagatatgaacttt 182  Q
    |||||||||||| |||| ||||| || |||||| |||||| ||||||||||||   |||   |||||||||| | ||| ||||   | |||| |||||||    
T  2499906 aaatccaactgcttagggcaacccataaatttactacatcctttattttaacgaacttgctaagtagaaattaacaacggtcctcgtggatacgaacttt 2499807  T
Q  183 attactacttcgataacttttaacagacttaccaaatatctatcacc 229  Q
    ||||||||||||||| |||||   | |||| ||||||||||||||||    
T  2499806 attactacttcgatatcttttggtacacttgccaaatatctatcacc 2499760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 26338204 - 26338261
Alignment:
Q  84 aaatccaactgcctaggacaaccaatgaatttaatacatcatttattttaacgctttt 141  Q
    ||||||||||||||||| ||||| || ||||||||||||| |||||| ||||||||||    
T  26338204 aaatccaactgcctagggcaacccataaatttaatacatcctttattctaacgctttt 26338261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 34406038 - 34406094
Alignment:
Q  171 gatatgaactttattactacttcgataacttttaacagacttaccaaatatctatca 227  Q
    |||| |||||||||||||||||||||| |||||   | |||| ||||||||||||||    
T  34406038 gatacgaactttattactacttcgatagcttttggtacacttgccaaatatctatca 34406094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 13572254 - 13572065
Alignment:
Q  17 taatcacctattttccatataatttccaaccagttttatttacttgcaatttattatttttagcactaaatccaactgcctaggacaaccaatgaattta 116  Q
    |||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||  ||||| || |||| |    
T  13572254 taatcatctcttttccacataatttccaaccagttttatttacttgcaatttattatttttagcacctaatccaactgcctagtgcaacccataaattca 13572155  T
Q  117 atacatcatttattttaacgcttttgtcgagtag--aaattga-aacagtccctatagatatgaactttattactacttcgataactttt 203  Q
     |||||| ||||||||||||  ||||   |||||  ||||| | ||| ||||   |||||| |||||||||||||||||||||| |||||    
T  13572154 ctacatcctttattttaacgaatttgctaagtagaaaaattaacaacggtcctcgtagatacgaactttattactacttcgatagctttt 13572065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 30719910 - 30720076
Alignment:
Q  1 agaggattcaaaagcttaatcacctattttccatataat-ttccaaccagttttatttacttgcaatttattattttta-gcactaaatccaactgccta 98  Q
    ||||||||| |||||||||||| || |||||||||| || ||||||||||||| |||||||| |||||||||||||||| ||| | ||  ||||||||||    
T  30719910 agaggattcgaaagcttaatcatctgttttccatattatcttccaaccagttt-atttactttcaatttattatttttatgcaatcaactcaactgccta 30720008  T
Q  99 ggacaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccct 167  Q
     | || ||| ||||||||||| ||| |||||||||||||||||| ||||||||||||||||||| ||||    
T  30720009 aggca-ccattgaatttaatatatcctttattttaacgcttttgccgagtagaaattgaaacagcccct 30720076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 32575827 - 32575776
Alignment:
Q  85 aatccaactgcctaggacaaccaatgaatttaatacatcatttattttaacg 136  Q
    ||||||||||||||||  ||| | |||||||||||||||||||||| |||||    
T  32575827 aatccaactgcctagggtaacaattgaatttaatacatcatttattataacg 32575776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 84 - 203
Target Start/End: Complemental strand, 90441 - 90322
Alignment:
Q  84 aaatccaactgcctaggacaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaacttta 183  Q
    |||||||| |||||||| ||||| || ||||||||||||| |||||||||||||||||| |||||||||||||||||||||| | | |||| ||||||||    
T  90441 aaatccaattgcctagggcaacccataaatttaatacatcctttattttaacgcttttgccgagtagaaattgaaacagtccatgtggatacgaacttta 90342  T
Q  184 ttactacttcgataactttt 203  Q
    ||| |||||||||| |||||    
T  90341 ttagtacttcgatagctttt 90322  T

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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 7394854 - 7394690
Alignment:
Q  1 agaggattcaaaagcttaatcacctattttccatataatttccaaccagtttt-atttacttgcaatttattatttttagcactaaatccaactgcctag 99  Q
    |||||||||||||||| ||||| || |||| |||||||| |||||||| |||| ||||||||||||||||||||||||| || | |||||||||||||||    
T  7394854 agaggattcaaaagctgaatcatctgtttttcatataatctccaaccattttttatttacttgcaatttattatttttatcatttaatccaactgcctag 7394755  T
Q  100 gacaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtcc 165  Q
    | ||||| || | ||||| ||||| || ||||||| |  ||||  |||||||||||||||||||||    
T  7394754 ggcaacc-ataattttaacacatccttaattttaatgtctttgctgagtagaaattgaaacagtcc 7394690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 24605230 - 24605067
Alignment:
Q  1 agaggattcaaaagcttaatcacctattttccatataat-ttccaaccagttttatttacttgcaatttattattttta-gcactaaatccaactgccta 98  Q
    ||||||||  ||||| |||||| || ||||||||||||| ||||||||||||| |||| |||||||||||||||||||  ||| | ||  ||||||||||    
T  24605230 agaggattagaaagcataatcatctgttttccatataatcttccaaccagttt-attttcttgcaatttattatttttctgcaatcaactcaactgccta 24605132  T
Q  99 ggacaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtcc 165  Q
    ||   |||| ||||||||||||||| |||||||||||| ||||| | ||||||||||||||||||||    
T  24605131 ggc--accattgaatttaatacatcctttattttaacgtttttgccaagtagaaattgaaacagtcc 24605067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 84 - 189
Target Start/End: Original strand, 37176858 - 37176963
Alignment:
Q  84 aaatccaactgcctaggacaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaacttta 183  Q
    ||||||||||| ||||| ||||| || ||||||||||||| |||||||||| ||||||| |||||||||||||||||||||| | | |||| ||||||||    
T  37176858 aaatccaactgtctagggcaacccataaatttaatacatcctttattttaaagcttttgccgagtagaaattgaaacagtccttgtggatacgaacttta 37176957  T
Q  184 ttacta 189  Q
    ||||||    
T  37176958 ttacta 37176963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0401 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 84 - 227
Target Start/End: Original strand, 4480 - 4623
Alignment:
Q  84 aaatccaactgcctaggacaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaacttta 183  Q
    |||||||| | |||||| ||||| || ||||||||||||| |||||||||||||||||  |||||||||||||| ||||||||| | ||||  |||||||    
T  4480 aaatccaatttcctagggcaacccataaatttaatacatcctttattttaacgctttttccgagtagaaattgatacagtccctgtggatacaaacttta 4579  T
Q  184 ttactacttcgataacttttaacagacttaccaaatatctatca 227  Q
    ||||||||||||||  ||||   | |||| ||||||||||||||    
T  4580 ttactacttcgatagttttttgtacacttgccaaatatctatca 4623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 84 - 203
Target Start/End: Original strand, 42822 - 42941
Alignment:
Q  84 aaatccaactgcctaggacaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaacttta 183  Q
    |||||||| ||||||||  || | || ||||||||||||| |||||||||||| ||||| ||||||||| |||||||||||||| |  ||| ||||||||    
T  42822 aaatccaaatgcctagggaaatccataaatttaatacatcctttattttaacgtttttgccgagtagaagttgaaacagtccctgtgaatacgaacttta 42921  T
Q  184 ttactacttcgataactttt 203  Q
    |||| ||||||||| |||||    
T  42922 ttacgacttcgatagctttt 42941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 49148000 - 49148096
Alignment:
Q  85 aatccaactgcctaggacaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaactt 181  Q
    |||||||||||||||| ||||   ||||||||||||||| |||||||||||| |||||  ||||||||||||||||||||||| | |||| ||||||    
T  49148000 aatccaactgcctagggcaacttttgaatttaatacatcctttattttaacgtttttgctgagtagaaattgaaacagtccctgtggatacgaactt 49148096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 22448065 - 22447996
Alignment:
Q  112 atttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaactt 181  Q
    |||||||||||| |||||||||||| |||||  ||||||||||||||||||||||| | |||||||||||    
T  22448065 atttaatacatcctttattttaacgtttttgctgagtagaaattgaaacagtccctgtggatatgaactt 22447996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 22453299 - 22453230
Alignment:
Q  112 atttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaactt 181  Q
    |||||||||||| |||||||||||| |||||  ||||||||||||||||||||||| | |||||||||||    
T  22453299 atttaatacatcctttattttaacgtttttgctgagtagaaattgaaacagtccctgtggatatgaactt 22453230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 8435362 - 8435418
Alignment:
Q  109 tgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtcc 165  Q
    ||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||    
T  8435362 tgaatttaatacatcctttattttaacgcttttgcagagtagaaattgaaacagtcc 8435418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 22456636 - 22456540
Alignment:
Q  85 aatccaactgcctaggacaaccaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaactt 181  Q
    |||||||||||||| | ||||   ||||||||||||||| ||||||||| || |||||  ||||||||||||||||||||||| | |||| ||||||    
T  22456636 aatccaactgcctatggcaacttttgaatttaatacatcctttattttatcgtttttgctgagtagaaattgaaacagtccctgtggatacgaactt 22456540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 17618981 - 17618909
Alignment:
Q  109 tgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaactt 181  Q
    ||||||||||| ||  |||||||||||| ||||||| |||||||||||||||||||||| |  ||||||||||    
T  17618981 tgaatttaatatattctttattttaacgtttttgtcaagtagaaattgaaacagtccctgtgaatatgaactt 17618909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 34066471 - 34066543
Alignment:
Q  109 tgaatttaatacatcatttattttaacgcttttgtcgagtagaaattgaaacagtccctatagatatgaactt 181  Q
    ||||||||||||||| |||||||||| | ||||  |||||||||||||||||||||||| | |||| ||||||    
T  34066471 tgaatttaatacatcctttattttaaagttttttccgagtagaaattgaaacagtccctgtggatacgaactt 34066543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 16190302 - 16190251
Alignment:
Q  104 accaatgaatttaatacatcatttattttaacgcttttgtcgagtagaaatt 155  Q
    |||| ||||||||||||||| |||||||||||| ||||||||| || |||||    
T  16190302 accattgaatttaatacatcctttattttaacgtttttgtcgaataaaaatt 16190251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 10765109 - 10765166
Alignment:
Q  171 gatatgaactttattactacttcgataacttttaacagacttaccaaatatctatcac 228  Q
    |||| |||||||||||||||||||||| |||||   | |||| |||||||||||||||    
T  10765109 gatacgaactttattactacttcgatagcttttggtacacttgccaaatatctatcac 10765166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 13493452 - 13493508
Alignment:
Q  171 gatatgaactttattactacttcgataacttttaacagacttaccaaatatctatca 227  Q
    |||| |||||||||||||||||||||| |||||   | |||| ||||||||||||||    
T  13493452 gatacgaactttattactacttcgatagcttttggtacacttgccaaatatctatca 13493508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 23990253 - 23990221
Alignment:
Q  109 tgaatttaatacatcatttattttaacgctttt 141  Q
    ||||||||||||||| |||||||||||||||||    
T  23990253 tgaatttaatacatcctttattttaacgctttt 23990221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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