View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12859_high_31 (Length: 303)
Name: NF12859_high_31
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12859_high_31 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 6 - 287
Target Start/End: Complemental strand, 33222186 - 33221905
Alignment:
| Q |
6 |
gataatttggaaaaccattggtggttggcttacttcaaaccctaaagagatttgagcaatttagaaacttgattaggtttgaaagatgaaacactaggag |
105 |
Q |
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| T |
33222186 |
gataatttggaaaaccattggtggttggcttacttcaaaccctaaagagatttgagcaatttagaaacttgattaggtttgaaagatgaaacactaggag |
33222087 |
T |
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| Q |
106 |
gaagcttcatgcttacatccttatcaaggcctccatgaataaatgcatttttgacattcaattgttggagatgccaattatgtgtagcatctaatgcaag |
205 |
Q |
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| T |
33222086 |
gaagcttcatgcttacatccttatcaaggtctccatgaataaatgcatttttgacattcaattgttggagatgccaattatgtgtagcatctaatgcaag |
33221987 |
T |
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| Q |
206 |
caagaaacacaaaatagtaagttttgatacaagactttaagtaccaaaatagttcactcattcttgttgagtgtagcacttt |
287 |
Q |
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| T |
33221986 |
caacaaacacacaatagtaagttttgctacatgactaaaagtgtcaaaatagttcactcattcttgcagagtgtagcccttt |
33221905 |
T |
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Back To:
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Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 6 - 280
Target Start/End: Complemental strand, 33110602 - 33110329
Alignment:
| Q |
6 |
gataatttggaaaaccattggtggttggcttacttcaaaccctaaagagatttga-gcaatttagaaacttgattaggtttgaaagatgaaacactagga |
104 |
Q |
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| T |
33110602 |
gataatttggagagccattgcagcttgccttatttcaaaccataaagaggtttaaagtagtttacaaacttgatttggtttggaagaatgaacaccagga |
33110503 |
T |
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| Q |
105 |
ggaagcttcatgcttacatccttatcaaggcctccatgaataaatgcatttttgacattcaattgttggagatgccaattatgtgtagcatctaatgcaa |
204 |
Q |
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| T |
33110502 |
tgaagcttcatgtacacatcttcatcaaggtctccatgaaggaaagcattattgacatccagtttttggagatgccaattatgtgtagcagctaaagcaa |
33110403 |
T |
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| Q |
205 |
gcaagaaacacaaaatagtaagttttgatacaagactttaagtaccaaaatagttcactcattcttgttgagtgta |
280 |
Q |
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| T |
33110402 |
gtaacaagcgc--attagtgagttttgtaacaggattaaaagtatcaaaataattcactccttcttgttgagtgta |
33110329 |
T |
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