View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12859_high_8 (Length: 547)
Name: NF12859_high_8
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12859_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 1 - 529
Target Start/End: Complemental strand, 20677408 - 20676880
Alignment:
| Q |
1 |
caagagaaaatgaagacaaaaacaggagcccttgaaaggttgaatgagatatcaaaattctatgaattggcagtgatgcaacttgaaggttgtctagcca |
100 |
Q |
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| T |
20677408 |
caagagaaaatgaagacaaaaacaggagtccttgaaaggttgaatgagatatcaaaattctatgaattggcagtgatgcaacttgaaggttgtctaacca |
20677309 |
T |
|
| Q |
101 |
ttgttcatgccgagacggaaagtagttttctcgaaagcaatcatgaaaaactacttgacgacctacgagaaataaaagatcgccttcaaggacgtctcga |
200 |
Q |
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| T |
20677308 |
ttgttcatgccgagacggaaagtagttttctcgaaagcaatcatgaaaaactacttgatgacctacgagaaataaaagatcgccttcaaggacgtctcga |
20677209 |
T |
|
| Q |
201 |
ggaatctgaatcgattattttagagaaagatagagagttgtcacaaagattgaagaaaaaccatacaactagttacgtaaaagtaaagagtgatggtaat |
300 |
Q |
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| T |
20677208 |
ggaatcggaatcgattattttagagaaggatagagagttgtcacaaagattgaagaaaaaccaaacaactagttacgtaaaagtaaagagtgatggtaat |
20677109 |
T |
|
| Q |
301 |
ttatgtgagttgaggagtagtatggatcaacaaatgttgaatattaaacaaagacttgaaccacaacatgacatagtggaaaatgttgtaccacaatcac |
400 |
Q |
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| T |
20677108 |
ttatgtgagttgaggagtagtatggatcaacaaatgttgaatattaaacaaagacttgaaccacaacatgacgtagtggaaaatgttgtaccacaatcac |
20677009 |
T |
|
| Q |
401 |
ataatattgtcattgacacaaaaaagattgaagagatgggttcagatattgatgtattaaagcaaactatggaccttgcttttggtaagatgcaaagtgc |
500 |
Q |
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| T |
20677008 |
ataatattgtcattgacacaaaaaagattgaagagatgggttcagatattgatgtattaaagcaaactatggaccttgcttttggtaagatgcaaagtgc |
20676909 |
T |
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| Q |
501 |
tctttttacatgtgagatgaggccaaaag |
529 |
Q |
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| T |
20676908 |
tcttttttcatgtgagatgaggccaaaag |
20676880 |
T |
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