View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12859_low_1 (Length: 935)
Name: NF12859_low_1
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12859_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 16201624 - 16201422
Alignment:
| Q |
17 |
aggccaagagggaaggtgactgagagtgaagaagtgaagaggaggttaggaggttgggatgatgagattaaagatggggagtttggtaaaggtatggttg |
116 |
Q |
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| T |
16201624 |
aggccaagagggaaggtgactgagagtgaagaagtgaagaggaggttaggaggttgggatgatgagattaaagatggggagtttggtaaaggtatggttg |
16201525 |
T |
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| Q |
117 |
atatggttaaagaaactgttggatcttggtttgggaaaccaggggaaaatgaatcaactcaaggttagtactttgtgacttcatttctttatttatgatt |
216 |
Q |
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| T |
16201524 |
atatggttaaggaaactgttggatcttggtttgggaaaccaggggaaaatgaatcaactcaaggttagtactttgtgacttcatttctttatttatgatt |
16201425 |
T |
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| Q |
217 |
cat |
219 |
Q |
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| T |
16201424 |
cat |
16201422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 162; E-Value: 6e-86
Query Start/End: Original strand, 547 - 792
Target Start/End: Complemental strand, 16201006 - 16200771
Alignment:
| Q |
547 |
ggagactacaagactgtgttactataagtttattataatatttggatgtttattttagtctcagctaaattccaagactattattggatgtatatctgag |
646 |
Q |
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| T |
16201006 |
ggagactacaaaactgtgttactataagtttattataatgtttgaatgctt-------tcaaagctatatttcaagactatt---gggtgtatatctgag |
16200917 |
T |
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| Q |
647 |
gtggtttgatacatttctacatctaatgacttacaatgttcctatgtggtgtattggaatctgtattcatattgtataatagttaagtttcaaataatag |
746 |
Q |
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| T |
16200916 |
gtggtttgatacatttctacatctaatgacttacaatgttcctatgttgtgtattggaatctgtattcatattgcataatagttaagtttcaaataatag |
16200817 |
T |
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| Q |
747 |
gtacttagtatgtgatcgtgataattaactcaatcttactacatga |
792 |
Q |
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| T |
16200816 |
gtacttagtatgtgatcgtgataattaactcaatcttactacatga |
16200771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 225 - 470
Target Start/End: Complemental strand, 16201310 - 16201083
Alignment:
| Q |
225 |
taaaactaatagactaggaagagtttgtacaagtgttttgctgtgattttgagacattcatagattacagtttacacaatctggtaaaaagtgtgacctt |
324 |
Q |
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| T |
16201310 |
taaaactaatagactaagaagagtttgtacaagtgttttgctgtaattttgatacattcat----------------------gtaaaaagtgtgacctt |
16201233 |
T |
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| Q |
325 |
tgatttttaatttgt----ttgtaggaagtgaaggaatgcctaggaatactggtgctgaagttggacaggttcatcaagctgcaggtgaaagaagacttc |
420 |
Q |
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| T |
16201232 |
tgatttttaatttgtgttattgtaggaagtgaaggaatgcctaggaatactggtgctgaggttggacaggttcatcaaactgcaggtgaaagaagacttc |
16201133 |
T |
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| Q |
421 |
aggattcagctcattgaagaattggtttcttctgtgaattatcataatta |
470 |
Q |
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| T |
16201132 |
aggattcagctcattgaagaattggtttcttctgtgaattatcataatta |
16201083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 815 - 900
Target Start/End: Complemental strand, 16198875 - 16198791
Alignment:
| Q |
815 |
ttgatatacaaccaagacaacacaacacttacaaagacttgcctcataggattctcctgttgaagcaccaaattcacttgcatttc |
900 |
Q |
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| T |
16198875 |
ttgatatacaaccaagacaacacaacacttac-aagacttgcctcataggactctactgttgtaacaccaaatccacttgcatttc |
16198791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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