View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12859_low_11 (Length: 472)
Name: NF12859_low_11
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12859_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 12 - 308
Target Start/End: Original strand, 14744977 - 14745278
Alignment:
| Q |
12 |
ggcaagaatgacgaatataatgatagctggaatgcacttgggcaaaaacaa-gatgagtggtaaggggagatgatcagaaacgacgacaa----gagtta |
106 |
Q |
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| T |
14744977 |
ggcaagaatgacgaatataatgatagctggaatgcacttgggcaaaaacaatgatgagtggtaaggggagatgatcagaaacgacgacaacaacgagtga |
14745076 |
T |
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| Q |
107 |
aggtaaagatgagttaagaaggcattgagtgaccaagaagaagaataaagacgtaaggtttctttttggctgtgttttgagagagaataagtacagaggt |
206 |
Q |
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| T |
14745077 |
aggtaaagatgagttaagaaggcattgagtgaccaagaagaagaataaagacgtaagggttctttttggctgtgttttgagagagaataagtacagagtt |
14745176 |
T |
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| Q |
207 |
ttcatgacaaacatgttttgtattctaacggcgatttgactgaatgtaactggaagggaggtatctgatgctttgcaaagcagaggggacatatgatgat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
14745177 |
ttcatgacaaacatgttttgtattctaacggcgatttgactgaatgtaactggaggggaggtatctgatgctttgcaaaacagaggggacatatgacgat |
14745276 |
T |
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| Q |
307 |
at |
308 |
Q |
| |
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|| |
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| T |
14745277 |
at |
14745278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 295 - 351
Target Start/End: Original strand, 14741622 - 14741678
Alignment:
| Q |
295 |
acatatgatgatattttctcttcacttcccaatataaatacttacaagttttgaacc |
351 |
Q |
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| T |
14741622 |
acatattatgatattttctcttcacttcccaatataaatacttacaagttttgaacc |
14741678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 14283718 - 14283665
Alignment:
| Q |
298 |
tatgatgatattttctcttcacttcccaatataaatacttacaagttttgaacc |
351 |
Q |
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| T |
14283718 |
tatgatgatattttctcttcacctcccaatataaatacttacaagttttgaacc |
14283665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 384 - 453
Target Start/End: Original strand, 14741773 - 14741846
Alignment:
| Q |
384 |
caaaaatcatagcttcaaacgtatttattttcatctgtatatgta----ctgtatagtgaaggctaaacaaatc |
453 |
Q |
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| T |
14741773 |
caaaactcatagcttcaaacttatttattttcatctgtatatgtattgtatgtatagtgaaggctgaacaaatc |
14741846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 338
Target Start/End: Complemental strand, 15011031 - 15010988
Alignment:
| Q |
295 |
acatatgatgatattttctcttcacttcccaatataaatactta |
338 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||| |
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| T |
15011031 |
acatatgaagaaattttctcttcacttcccaatataaatactta |
15010988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 351
Target Start/End: Complemental strand, 14290974 - 14290921
Alignment:
| Q |
297 |
atatgatgatattttctcttcacttcccaatataaatacttacaagttttgaacc |
351 |
Q |
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||||||||||||||||||||||| || ||||||||||| ||||||||||||||| |
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| T |
14290974 |
atatgatgatattttctcttcacctctgaatataaatac-tacaagttttgaacc |
14290921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 295 - 351
Target Start/End: Complemental strand, 23876007 - 23875951
Alignment:
| Q |
295 |
acatatgatgatattttctcttcacttcccaatataaatacttacaagttttgaacc |
351 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||| |||| ||||||||| |
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| T |
23876007 |
acatatgatgatattttttctttacttcccaatataaatactcacaacttttgaacc |
23875951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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