View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12859_low_14 (Length: 454)
Name: NF12859_low_14
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12859_low_14 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 20 - 427
Target Start/End: Original strand, 14993796 - 14994213
Alignment:
| Q |
20 |
aacaatcaatagaagccattgaacggcaaccaaagagcgacgaaaccactaaaacctagaatcacaaatcaaagacaaaccgaacaaaaccat------- |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14993796 |
aacaatcaatagaagccattgaacggcaaccaaagagcgacgaaaccactaaaacctagaatcacaaatcaaagacaacccgaacaaaaccattacccat |
14993895 |
T |
|
| Q |
113 |
caccagtcacagtgttgccgttggaaagctgcaacactgtggtttaagagaatcagcgacaaacgaacctagattgaaaaaaca---acaacaatagtaa |
209 |
Q |
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||||| ||||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14993896 |
caccactcacagtgttgccattggaaagctgcaacaccgtcgtttaagagaatcaacgacaaacgaacctagattgaaaaaacaacaacaacaatagtaa |
14993995 |
T |
|
| Q |
210 |
catcatgatggatgtcataataaggaacatcaccaatattattagatattgaaatattcgaaatttgagtaatagtagaaggcacagaataacgagcaat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14993996 |
catcatgatggatgtcataataaggaacatcaccaatattattagatattgaaatattcgaaatttgagtaatagtagaaggcacagaataacgagcaat |
14994095 |
T |
|
| Q |
310 |
tcaaaagtaatgtagaagattttgttgttttaaagggtaatttagcttaaagttagtaacatttttaaatactttaattcttccataaattcaattatca |
409 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |||||| |
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| T |
14994096 |
tgaaaagtaatgtagaagattttgttgttttaaagggtaatttagcttatagttagtaacatttttaaatactttaatttttccatagattcatttatca |
14994195 |
T |
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| Q |
410 |
taccttgatactcaacga |
427 |
Q |
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|||||||||||||||||| |
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| T |
14994196 |
taccttgatactcaacga |
14994213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 27741203 - 27741088
Alignment:
| Q |
23 |
aatcaatagaagccattgaacggcaaccaaagagcgacgaaaccactaaaacctagaatcacaaatcaaagacaaaccgaacaaaaccatcaccagtcac |
122 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||||| |||||| || ||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
27741203 |
aatcaatagaagccattgaatggcaaccgaagagcgacgaaaccaccaaaacccaggatcacaaatcaaagacaaaccaaacaaaaccatcaccacgcac |
27741104 |
T |
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| Q |
123 |
agtgttgccgttggaa |
138 |
Q |
| |
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|||||| || |||||| |
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| T |
27741103 |
agtgttcccattggaa |
27741088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 22577851 - 22578032
Alignment:
| Q |
20 |
aacaatcaatagaagccattgaacggcaaccaaagagcgacgaaaccactaaaacctagaatcacaaatcaaagacaaaccgaacaaaaccatcaccagt |
119 |
Q |
| |
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|||||||||||||||||||||||| || || | ||| |||||||||||| |||||||||||||||||||||||||||| || ||||||||| | | || |
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| T |
22577851 |
aacaatcaatagaagccattgaacagcgacgagagatcgacgaaaccaccaaaacctagaatcacaaatcaaagacaacccaaacaaaaccttgaacacg |
22577950 |
T |
|
| Q |
120 |
cacagtgttgccgttggaaagctgcaacactgtggtttaagagaatcagcgacaaacgaacctagattgaaaaaacaacaac |
201 |
Q |
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|||| ||||||| |||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22577951 |
cacaatgttgccattggaaagttgcaacactgtcgtttaagagaatcagtgacaaacgaacctagattgaaaaaacaacaac |
22578032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 19658428 - 19658609
Alignment:
| Q |
20 |
aacaatcaatagaagccattgaacggcaaccaaagagcgacgaaaccactaaaacctagaatcacaaatcaaagacaaaccgaacaaaaccatcaccagt |
119 |
Q |
| |
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||||| |||||||||||||||||| |||||| ||||||||||||||||||||||| ||||| |||||| ||||||||||| ||| || ||||||||| |
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| T |
19658428 |
aacaaccaatagaagccattgaaccacaaccagagagcgacgaaaccactaaaacccagaattacaaataaaagacaaaccaaacgaagccatcaccacg |
19658527 |
T |
|
| Q |
120 |
cacagtgttgccgttggaaagctgcaacactgtggtttaagagaatcagcgacaaacgaacctagattgaaaaaacaacaac |
201 |
Q |
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|||| |||| || || || || ||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
19658528 |
cacactgtttccattagagagatgcaacatcgtcgtttaagagaatcaacgacaaacgaacctagattgaaaaaacaacaac |
19658609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 54200626 - 54200733
Alignment:
| Q |
20 |
aacaatcaatagaagccattgaacggcaaccaaagagcgacgaaaccactaaaacctagaatcacaaatcaaagacaaaccgaacaaaaccatcaccagt |
119 |
Q |
| |
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|||||||||||||||||| |||||| |||| |||| ||||||||||| ||||| |||||||||||||||||| ||||| |||||||||||||||| |
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| T |
54200626 |
aacaatcaatagaagccactgaacgacaacttgagagtgacgaaaccacaaaaactcagaatcacaaatcaaagataaaccaaacaaaaccatcaccaca |
54200725 |
T |
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| Q |
120 |
cacagtgt |
127 |
Q |
| |
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|||||||| |
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| T |
54200726 |
cacagtgt |
54200733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 54200735 - 54200779
Alignment:
| Q |
154 |
gtttaagagaatcagcgacaaacgaacctagattgaaaaaacaac |
198 |
Q |
| |
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|||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
54200735 |
gtttaagagaatcagcaacaaacaaacctagattgaaaaaacaac |
54200779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 39 - 201
Target Start/End: Original strand, 54662 - 54824
Alignment:
| Q |
39 |
tgaacggcaaccaaagagcgacgaaaccactaaaacctagaatcacaaatcaaagacaaaccgaacaaaaccatcaccagt-cacagtgttgccgttgga |
137 |
Q |
| |
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|||||||||||| |||||||||||||||| |||||||||||||| |||| ||| ||||| | | || || | ||| | ||| |||||| ||||| | |
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| T |
54662 |
tgaacggcaaccggagagcgacgaaaccaccaaaacctagaatcataaataaaaaacaaaaccatcaccacgagcacaaacgcac-gtgttgtcgttgaa |
54760 |
T |
|
| Q |
138 |
aagctgcaacactgtggtttaagagaatcagcgacaaacgaacctagattgaaaaaacaacaac |
201 |
Q |
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|||||||||||| || ||||||||||||||| ||||||| |||||||||| ||| |||||||| |
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| T |
54761 |
aagctgcaacaccgtcgtttaagagaatcagtgacaaacaaacctagattaaaactacaacaac |
54824 |
T |
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