View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12859_low_16 (Length: 450)

Name: NF12859_low_16
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12859_low_16
NF12859_low_16
[»] scaffold0372 (1 HSPs)
scaffold0372 (18-444)||(3725-4147)
[»] chr4 (1 HSPs)
chr4 (18-444)||(21447389-21447811)
[»] chr2 (2 HSPs)
chr2 (18-245)||(40685001-40685228)
chr2 (363-437)||(40684774-40684848)


Alignment Details
Target: scaffold0372 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: scaffold0372
Description:

Target: scaffold0372; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Complemental strand, 4147 - 3725
Alignment:
Q  18 catccttgggaagtgattgtgacacaccagccatcttttttgctttccttttggccttcgcttcagcaacagcaaccggatccaaacactcgcctgcatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4147 catccttgggaagtgattgtgacacaccagccatcttttttgctttctttttggccttcgcttcagcaacagcaaccggatccaaacactcgcctgcatg 4048  T
Q  118 gtaggtagaagcccacaacaaggggttttccttctcactggcaaaacttctcatcatgtgcctaatggaatccgttgatacaactgtcgtgattcccaat 217  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4047 gtaggtagaagcccacaacaaggggttttccttctcactagcaaaacttctcatcatgtgcctaatggaatccgttgatacaactgtcgtgattcccaat 3948  T
Q  218 ctgctaccctgaagtgaagatataaataaatgaaaccattattgaactgcaacaatagtagttttatacttcattaaacatttgcatatcctaccacgaa 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3947 ctgctaccctgaagtgaagatataaataaatgaaaccattattgaactgcaacaatagtagttttatacttcattaaacacttgcatatcctaccacgaa 3848  T
Q  318 ataagtaaaaactataactaacaaataactatttctgtaaagaagtataccagtattgcagacaacgtcgattttccacatccgctagtgccacataaca 417  Q
    ||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3847 ataagtaaaaacta----taacaaataactatttctgtaaagaagtataccagtattgcagacaacgtcgattttccacatccgctagtgccacataaca 3752  T
Q  418 gcactgtcacagattgcttcttctcac 444  Q
    ||||||||||||||| |||||| ||||    
T  3751 gcactgtcacagattccttcttttcac 3725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Original strand, 21447389 - 21447811
Alignment:
Q  18 catccttgggaagtgattgtgacacaccagccatcttttttgctttccttttggccttcgcttcagcaacagcaaccggatccaaacactcgcctgcatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21447389 catccttgggaagtgattgtgacacaccagccatcttttttgctttctttttggccttcgcttcagcaacagcaaccggatccaaacactcgcctgcatg 21447488  T
Q  118 gtaggtagaagcccacaacaaggggttttccttctcactggcaaaacttctcatcatgtgcctaatggaatccgttgatacaactgtcgtgattcccaat 217  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21447489 gtaggtagaagcccacaacaaggggttttccttctcactagcaaaacttctcatcatgtgcctaatggaatccgttgatacaactgtcgtgattcccaat 21447588  T
Q  218 ctgctaccctgaagtgaagatataaataaatgaaaccattattgaactgcaacaatagtagttttatacttcattaaacatttgcatatcctaccacgaa 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21447589 ctgctaccctgaagtgaagatataaataaatgaaaccattattgaactgcaacaatagtagttttatacttcattaaacacttgcatatcctaccacgaa 21447688  T
Q  318 ataagtaaaaactataactaacaaataactatttctgtaaagaagtataccagtattgcagacaacgtcgattttccacatccgctagtgccacataaca 417  Q
    ||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21447689 ataagtaaaaacta----taacaaataactatttctgtaaagaagtataccagtattgcagacaacgtcgattttccacatccgctagtgccacataaca 21447784  T
Q  418 gcactgtcacagattgcttcttctcac 444  Q
    ||||||||||||||| |||||| ||||    
T  21447785 gcactgtcacagattccttcttttcac 21447811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 40685228 - 40685001
Alignment:
Q  18 catccttgggaagtgattgtgacacaccagccatcttttttgctttccttttggccttcgcttcagcaacagcaaccggatccaaacactcgcctgcatg 117  Q
    ||||||| || ||||| ||||| ||||||||||||||||| ||| ||||||| ||||| ||||| ||||||||||| |||||||| ||||||||||||||    
T  40685228 catccttaggtagtgactgtgatacaccagccatctttttcgctctcctttttgcctttgcttctgcaacagcaacaggatccaagcactcgcctgcatg 40685129  T
Q  118 gtaggtagaagcccacaacaaggggttttccttctcactggcaaaacttctcatcatgtgcctaatggaatccgttgatacaactgtcgtgattcccaat 217  Q
    ||||||||| ||||| ||||||||||||||||| ||| | ||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||      
T  40685128 gtaggtagaggcccataacaaggggttttccttttcattagcaaaacctctcatcatgtgcctaatggaatcagttgatacaactgttgtgattcccagc 40685029  T
Q  218 ctgctaccctgaagtgaagatataaata 245  Q
    |  || ||||||||| ||||||||||||    
T  40685028 cgacttccctgaagtaaagatataaata 40685001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 437
Target Start/End: Complemental strand, 40684848 - 40684774
Alignment:
Q  363 tataccagtattgcagacaacgtcgattttccacatccgctagtgccacataacagcactgtcacagattgcttc 437  Q
    |||||||| | ||||||||| || ||||| ||||| || ||||| ||||| || |||||||||||||||| ||||    
T  40684848 tataccagcaatgcagacaatgtggatttcccacaaccactagttccacacaaaagcactgtcacagattccttc 40684774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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