View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12859_low_18 (Length: 446)
Name: NF12859_low_18
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12859_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 13217032 - 13217459
Alignment:
| Q |
1 |
aataaagatcacaggcctggtaaaccttggtgacataactaattctaatagaatatcaggcattgagtataacaattaacaaacaataatttcaatggtt |
100 |
Q |
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| T |
13217032 |
aataaagatcacaggcctggtaaaccttggtgacataactaattctaatagaatatcaggcattgagtataacaattaacaaacaataatttcaatggtt |
13217131 |
T |
|
| Q |
101 |
gtactacatgaaatgggacaactggacaaatactattctctccattacctggtaaaagaatgggctctgcctcttaacagctgaaatcagatcatattta |
200 |
Q |
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| T |
13217132 |
gtactacatgaaatgggacaactggacaaataccattctctccattacctggtaaaagaatgggctctgcctcttaacagctgaaatcagatcatattta |
13217231 |
T |
|
| Q |
201 |
gtgtattttgcaagactagtggtccttttagagatatcctcaggatcaaggttaatcaaatcagaattgtatggctcattgggatacaatttgttccaga |
300 |
Q |
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| T |
13217232 |
gtgtattttgcaagactagtggtccttttagagatatcctcaggatcaaggttaatcaaatcagaattgtatggctcatcgggatacaatttgttccaga |
13217331 |
T |
|
| Q |
301 |
tttcttcagtttgcctgccacaaattccttcaacggtagagacaacatcaaagttgtcaagtacacgtccataaagctcctcacagtcaagtttgtacct |
400 |
Q |
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| T |
13217332 |
tttcttcagtttgcctgccacaaattccttcaacggtagagacaacatcaaagttgtcaagtacaagtccataaagctcctcacagtcaagtttgtacct |
13217431 |
T |
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| Q |
401 |
tacctgtgtaaagaatggaaacaaatag |
428 |
Q |
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| T |
13217432 |
tacctgtgtaaagaatggaaacaaatag |
13217459 |
T |
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