View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12859_low_20 (Length: 421)
Name: NF12859_low_20
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12859_low_20 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 7e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 162 - 412
Target Start/End: Original strand, 53325164 - 53325413
Alignment:
| Q |
162 |
gactgacacatatttactctagccatacattgtgctcttgtgatgggatttggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtac |
261 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| || | ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
53325164 |
gactgacacatatttactctagctatacattgtgctcttatggtaggatttggtctcaaaaggttctttgagttactcacatagcttcttgcacaagtac |
53325263 |
T |
|
| Q |
262 |
atcctagagtaaagnnnnnnnncttccatcctttgcatattttgaattgattttaacagttccaaaacccatacatctagcataactcttgtaatatttg |
361 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53325264 |
atcctagagtaaagtatttttt-ttccatcctttgcattttttgaattgattttaacagttccaaaacccatacatctagcataactcttgtaatatttg |
53325362 |
T |
|
| Q |
362 |
gtaatttcttcttcaaaactaaatgtcatcccaatcctaggttcttcatct |
412 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
53325363 |
gtaatttcttcttcagaattaaatgtcatcccaatcctaggttcttcatct |
53325413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 175; Significance: 4e-94; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 162 - 412
Target Start/End: Complemental strand, 14122694 - 14122445
Alignment:
| Q |
162 |
gactgacacatatttactctagccatacattgtgctcttgtgatgggatttggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtac |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
14122694 |
gactgacacatatttactctagccatacattgtgctcttatgataggatttggtttcaaaaggttctttgtgttactcacatagcttcttgcacaagtac |
14122595 |
T |
|
| Q |
262 |
atcctagagtaaagnnnnnnnncttccatcctttgcatattttgaattgattttaacagttccaaaacccatacatctagcataactcttgtaatatttg |
361 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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|
| T |
14122594 |
atcctagagtaaagtatttttt-ttccatcctttgcattttttgaattgattttaacagttccaaaacccatacatctagcatagctcttataatatttg |
14122496 |
T |
|
| Q |
362 |
gtaatttcttcttcaaaactaaatgtcatcccaatcctaggttcttcatct |
412 |
Q |
| |
|
|||| |||||||||| || ||||||||||||||||||||| |||||||||| |
|
|
| T |
14122495 |
gtaacttcttcttcagaattaaatgtcatcccaatcctagattcttcatct |
14122445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 14124042 - 14123917
Alignment:
| Q |
18 |
ttttatttatttggacctgatttacttcaacaaaatatttttgatttcgattgaagggagctaaatttgcttaaattctctcttgtgtgccaatcccatc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||| |||||||||| |
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|
| T |
14124042 |
ttttatttatttggacctgatttacttcaacaaaatatttttgatttggattgaagggagctaaatttgcttgaattctctattgtgtgtcaatcccatc |
14123943 |
T |
|
| Q |
118 |
aatgatctgagatgtagaaaactcag |
143 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
14123942 |
aatgatctgagatgtagaaaactcag |
14123917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 412
Target Start/End: Complemental strand, 41698489 - 41698399
Alignment:
| Q |
322 |
tccaaaacccatacatctagcataactcttgtaatatttggtaatttcttcttcaaaactaaatgtcatcccaatcctaggttcttcatct |
412 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||| || ||||||| | || ||||| |||| |||| | ||||||| |||||| |
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|
| T |
41698489 |
tccaaaacctatacatctagcataattcttgtaatatttgtcaacttcttctgtagaattaaatttcatgccaaccttaggttcatcatct |
41698399 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 412
Target Start/End: Complemental strand, 41704083 - 41703993
Alignment:
| Q |
322 |
tccaaaacccatacatctagcataactcttgtaatatttggtaatttcttcttcaaaactaaatgtcatcccaatcctaggttcttcatct |
412 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||| || ||||||| | || ||||| |||| |||| | ||||||| |||||| |
|
|
| T |
41704083 |
tccaaaacctatacatctagcataattcttgtaatatttgtcaacttcttctgtagaattaaatttcatgccaaccttaggttcatcatct |
41703993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 367 - 412
Target Start/End: Complemental strand, 40248601 - 40248556
Alignment:
| Q |
367 |
ttcttcttcaaaactaaatgtcatcccaatcctaggttcttcatct |
412 |
Q |
| |
|
|||||||||| | ||||||||||||||| | ||||||||||||||| |
|
|
| T |
40248601 |
ttcttcttcagacctaaatgtcatcccagttctaggttcttcatct |
40248556 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 172; Significance: 3e-92; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 169 - 412
Target Start/End: Complemental strand, 35049012 - 35048771
Alignment:
| Q |
169 |
acatatttactctagccatacattgtgctcttgtgatgggatttggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtacatcctag |
268 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35049012 |
acatatttactctagccatacactgtgctcttatggtaggatttggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtacatcctag |
35048913 |
T |
|
| Q |
269 |
agtaaagnnnnnnnncttccatcctttgcatattttgaattgattttaacagttccaaaacccatacatctagcataactcttgtaatatttggtaattt |
368 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| || |
|
|
| T |
35048912 |
agtaaagtattttt--ttccatcctttgcattttttgaattgattttaacagttccaaaacccatacatctagcatagctcttgtaatatttgataactt |
35048815 |
T |
|
| Q |
369 |
cttcttcaaaactaaatgtcatcccaatcctaggttcttcatct |
412 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
35048814 |
cttcttcagaactaaatgtcatcccaatcctaggttcctcatct |
35048771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 166 - 404
Target Start/End: Original strand, 15635878 - 15636115
Alignment:
| Q |
166 |
gacacatatttactctagccatacattgtgctcttgtgatgggatttggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtacatcc |
265 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| || | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15635878 |
gacacatgtttactctagccatacattgtgctcttatggtagggtttggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtacatcc |
15635977 |
T |
|
| Q |
266 |
tagagtaaagnnnnnnnncttccatcctttgcatattttgaattgattttaacagttccaaaacccatacatctagcataactcttgt-aatatttggta |
364 |
Q |
| |
|
|||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15635978 |
tagagtaaagtattttt--ttccatcctttgcatttttttaattgattttaacagttccaaaacccatacatctagcataactcttgtaaatatttggta |
15636075 |
T |
|
| Q |
365 |
atttcttcttcaaaactaaatgtcatcccaatcctaggtt |
404 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
15636076 |
atttcttcttcataactaaatgtcatcccaatcctaggtt |
15636115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 35051078 - 35050957
Alignment:
| Q |
22 |
atttatttggacctgatttacttcaacaaaatatttttgatttcgattgaagggagctaaatttgcttaaattctctcttgtgtgccaatcccatcaatg |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
35051078 |
atttatttggacctgatttacttcaacaaaatatttttgatttggattgaagggagctaaatttgcttgaattctctgttgtgtgccaatcccatcaatg |
35050979 |
T |
|
| Q |
122 |
atctgagatgtagaaaactcag |
143 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
35050978 |
atttgagatgtagaaaactcag |
35050957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 162 - 410
Target Start/End: Original strand, 20007672 - 20007921
Alignment:
| Q |
162 |
gactgacacatatttactctagccatacattgtgctcttgtgatgggatttggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtac |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
20007672 |
gactgacacatatttactctagccatacattgtgctcttatgataggatttggtttcaaaaggttctttgtgttactcacatagcttcttgcacaagtac |
20007771 |
T |
|
| Q |
262 |
atcctagagtaaag-nnnnnnnncttccatcctttgcatattttgaattgattttaacagttccaaaacccatacatctagcataactcttgtaatattt |
360 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| | |
|
|
| T |
20007772 |
atcctagagtaaagtattttttttttccatcctttgcattttttgaattgattttaacagttccaaaacccatacatctagcatagctcttataatatct |
20007871 |
T |
|
| Q |
361 |
ggtaatttcttcttcaaaactaaatgtcatcccaatcctaggttcttcat |
410 |
Q |
| |
|
||||| |||||||||| || ||||||||||||||||||||| |||||||| |
|
|
| T |
20007872 |
ggtaacttcttcttcataattaaatgtcatcccaatcctagattcttcat |
20007921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 20006324 - 20006449
Alignment:
| Q |
18 |
ttttatttatttggacctgatttacttcaacaaaatatttttgatttcgattgaagggagctaaatttgcttaaattctctcttgtgtgccaatcccatc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||| |||||||||| |
|
|
| T |
20006324 |
ttttatttatttggacctgatttacttcaacaaaatatttttgatttggattgaagggagctaaatttgcttgaattctctattgtgtgtcaatcccatc |
20006423 |
T |
|
| Q |
118 |
aatgatctgagatgtagaaaactcag |
143 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
20006424 |
aatgatctgagatgtagaaaactcag |
20006449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 359 - 412
Target Start/End: Complemental strand, 49622579 - 49622526
Alignment:
| Q |
359 |
ttggtaatttcttcttcaaaactaaatgtcatcccaatcctaggttcttcatct |
412 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
49622579 |
ttggtaacttcttcttcagaactaaatgtcatcccaatcctaggttcatcatct |
49622526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 412
Target Start/End: Original strand, 54078461 - 54078551
Alignment:
| Q |
322 |
tccaaaacccatacatctagcataactcttgtaatatttggtaatttcttcttcaaaactaaatgtcatcccaatcctaggttcttcatct |
412 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||| || ||||||| | || ||||| |||| |||| | ||||||| |||||| |
|
|
| T |
54078461 |
tccaaaacctatacatctagcataattcttgtaatatttgtcaacttcttctgtagaattaaatttcatgccaaccttaggttcatcatct |
54078551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 293 - 394
Target Start/End: Original strand, 9284809 - 9284910
Alignment:
| Q |
293 |
tttgcatattttgaattgattttaacagttccaaaacccatacatctagcataactcttgtaatatttggtaatttcttcttcaaaactaaatgtcatcc |
392 |
Q |
| |
|
||||||| ||||||||| |||||| | ||||||| |||||||||| | ||||| ||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
9284809 |
tttgcattttttgaatttattttaccgattccaaagcccatacatcaaacataattcttgtaatatgtggtaatttcttcttcggaactaaatgtcatcc |
9284908 |
T |
|
| Q |
393 |
ca |
394 |
Q |
| |
|
|| |
|
|
| T |
9284909 |
ca |
9284910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 361
Target Start/End: Complemental strand, 23556752 - 23556713
Alignment:
| Q |
322 |
tccaaaacccatacatctagcataactcttgtaatatttg |
361 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
23556752 |
tccaaaacctatacatctagcataattcttgtaatatttg |
23556713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 346
Target Start/End: Complemental strand, 1178055 - 1177994
Alignment:
| Q |
285 |
ttccatcctttgcatattttgaattgattttaacagttccaaaacccatacatctagcataa |
346 |
Q |
| |
|
||||||| ||||||| ||| ||||||||||| || |||||||||||||||||| ||||||| |
|
|
| T |
1178055 |
ttccatcatttgcattcttttaattgattttaccaattccaaaacccatacatcaagcataa |
1177994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 8532270 - 8532316
Alignment:
| Q |
38 |
tttacttcaacaaaatatttttgatttcgattgaagggagctaaatt |
84 |
Q |
| |
|
||||||||| |||||| || ||||||| ||||||||||||||||||| |
|
|
| T |
8532270 |
tttacttcagcaaaatgttcttgatttggattgaagggagctaaatt |
8532316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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