View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12859_low_21 (Length: 419)
Name: NF12859_low_21
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12859_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 249423 - 249017
Alignment:
| Q |
1 |
ttccttcttctgacatctctgctgttcagttatccatttgttctcattgctcaatctcccacaaccactatcagtgttgagggaattgtttattgtgatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
249423 |
ttccttcttctgacatctctgctgttcagttatccatttgttctcattgctcaatctcccacaaccactatcagtgttgagggaattgtttattgtgatg |
249324 |
T |
|
| Q |
101 |
cctgctcaaccggcactttctctaaacacagttatctcttgccaggtatgtatgcatgtatgtaccaagtaccttgttctttctcatgcaatatacacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
249323 |
cctgctcaaccggcactttctctaaacacagttatctcttgccaggtatgtatg----tatgtaccaagtaccttgttctttctcatgcaatatacacat |
249228 |
T |
|
| Q |
201 |
ggttattatattcagtcacttttattttcttaaatcattactagtgtctatgtgtatgtgttagtgtttggcgtctatgtctgaactttatatatagatt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
249227 |
ggttattatattcagtcacttttattttcttaaatcattaccagtgtctatgtgtatgtgttagtgtttggcgtctatgtctgaactttatatatagatt |
249128 |
T |
|
| Q |
301 |
ataagcaaatgaatgaattgattatatatgtcaggtgttgacgttcatatagagtgcagatttagagcaagctcaccaagaaccaacgaacagataaatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
249127 |
ataagcaaatgaatgaattgattatatatgtcaggtgttgacgttcatatagagtgcagatttagagcaagctcaccaagaaccaacgaacagataaatt |
249028 |
T |
|
| Q |
401 |
tctcagtgaac |
411 |
Q |
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||||||||||| |
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| T |
249027 |
tctcagtgaac |
249017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 17105300 - 17105255
Alignment:
| Q |
210 |
attcagtcacttttattttcttaaatcattactagtgtctatgtgt |
255 |
Q |
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||||| |||||||||||||||||||| |||| |||||||||||||| |
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| T |
17105300 |
attcaatcacttttattttcttaaattattattagtgtctatgtgt |
17105255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 26473302 - 26473347
Alignment:
| Q |
210 |
attcagtcacttttattttcttaaatcattactagtgtctatgtgt |
255 |
Q |
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|||||| |||||||||||||||||| ||||| ||||||||||||| |
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| T |
26473302 |
attcagacacttttattttcttaaactattacaagtgtctatgtgt |
26473347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 28090409 - 28090460
Alignment:
| Q |
210 |
attcagtcacttttattttcttaaatcattactagtgtctatgtgtatgtgt |
261 |
Q |
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|||||||||||||||||||||||||| |||||||||| | ||||| ||||| |
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| T |
28090409 |
attcagtcacttttattttcttaaattgttactagtgtgtgtgtgtgtgtgt |
28090460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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