View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12859_low_24 (Length: 400)
Name: NF12859_low_24
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12859_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 20 - 393
Target Start/End: Complemental strand, 39176986 - 39176613
Alignment:
| Q |
20 |
ctgctaccccagtttgccttgacaggggttgctgataacttcgttgatattgccaagatggaaatcttctatgatcaagcaccagaaggcatgaaaagtc |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39176986 |
ctgctaccccagtttgccttgacaggggttgctgataacttcgttgatattgccaagatggaaatcttctatgatcaagcaccagaaggcatgaaaagtc |
39176887 |
T |
|
| Q |
120 |
tcggaacagcgtatttcacaaccagcttaggtttaggaagctttctcagtactgttcttctgtctgctgttgctaatatcacccaaagacatggtcacaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39176886 |
tcggaacagcgtatttcacaaccagcttaggtttaggaagctttctcagtactgttcttctgtctgctgttgctaatatcacccaaagacatggtcacaa |
39176787 |
T |
|
| Q |
220 |
gggatggatattaaataacctaaacacttcccgtttagattattattatgtattcctggcaatactaagcttactcaacttccttttctttgtggttgtt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39176786 |
gggatggatattaaataacctaaacacttcccgtttagattattattatgtattcctggcaatactaagcttactcaacttccttttctttgtggttgtt |
39176687 |
T |
|
| Q |
320 |
gccaagttttatgcatataatgttgatgtaacacaaaacaaatatggcttggagatgatccttgcttcatctca |
393 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39176686 |
gccaagttttatgcatataatgttgatgtaacacaaaacaaatatggcttggagatgatccttgcttcaactca |
39176613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 29 - 362
Target Start/End: Complemental strand, 39223051 - 39222718
Alignment:
| Q |
29 |
cagtttgccttgacaggggttgctgataacttcgttgatattgccaagatggaaatcttctatgatcaagcaccagaaggcatgaaaagtctcggaacag |
128 |
Q |
| |
|
|||||||||||| | ||| ||||||||||||| ||||| ||||||||| | || |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39223051 |
cagtttgccttggctgggattgctgataactttgttgaaattgccaagttagagttcttctatgatcaagcaccagaaggcatgaaaagtctcggaacat |
39222952 |
T |
|
| Q |
129 |
cgtatttcacaaccagcttaggtttaggaagctttctcagtactgttcttctgtctgctgttgctaatatcacccaaagacatggtcacaagggatggat |
228 |
Q |
| |
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| ||||| ||||||||||| ||||||||||| ||||| |||||| | ||||| || || ||||| |||||||| |||||||||||||| || ||| | |
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| T |
39222951 |
catattttacaaccagcttgggtttaggaagttttctaagtactttccttctttcaatcgtcgctaaaatcacccagagacatggtcacaaaggttgggt |
39222852 |
T |
|
| Q |
229 |
attaaataacctaaacacttcccgtttagattattattatgtattcctggcaatactaagcttactcaacttccttttctttgtggttgttgccaagttt |
328 |
Q |
| |
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|| |||||||||||| || |||||||||||||||||| | ||| ||||| |||||||||| ||||||||||||| |||| |||||||||||||||| |
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| T |
39222851 |
tttggataacctaaacatctctcgtttagattattattatatgttcatggcagtactaagcttgctcaacttcctttgctttctggttgttgccaagtta |
39222752 |
T |
|
| Q |
329 |
tatgcatataatgttgatgtaacacaaaacaaat |
362 |
Q |
| |
|
| || ||||||||||||||| | ||||||||||| |
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|
| T |
39222751 |
tttgtatataatgttgatgtcagacaaaacaaat |
39222718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 29 - 393
Target Start/End: Complemental strand, 39193698 - 39193334
Alignment:
| Q |
29 |
cagtttgccttgacaggggttgctgataacttcgttgatattgccaagatggaaatcttctatgatcaagcaccagaaggcatgaaaagtctcggaacag |
128 |
Q |
| |
|
||||||||| || |||| ||||| ||| |||||| || ||||||||| | || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39193698 |
cagtttgccctgggagggattgctaataccttcgtggaaattgccaagttagagttcttctatgatcaagcaccagaaggcatgaaaagtctcggaacat |
39193599 |
T |
|
| Q |
129 |
cgtatttcacaaccagcttaggtttaggaagctttctcagtactgttcttctgtctgctgttgctaatatcacccaaagacatggtcacaagggatggat |
228 |
Q |
| |
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| ||||| ||||||||||| ||||||||||| ||||| |||||| | ||||| || | ||||||||||||||| || |||||||||||||| || ||| | |
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|
| T |
39193598 |
catattttacaaccagcttgggtttaggaagttttctaagtactttccttctttcagttgttgctaatatcactcagagacatggtcacaaaggttgggt |
39193499 |
T |
|
| Q |
229 |
attaaataacctaaacacttcccgtttagattattattatgtattcctggcaatactaagcttactcaacttccttttctttgtggttgttgccaagttt |
328 |
Q |
| |
|
|| |||||||||||| |||||||||||| |||||||| | ||| ||||| |||||||||| ||||||||||||| |||| |||||||||||||| | |
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|
| T |
39193498 |
tttggataacctaaacatctcccgtttagataattattatatgttcatggcagtactaagcttgctcaacttcctttgctttctggttgttgccaaggta |
39193399 |
T |
|
| Q |
329 |
tatgcatataatgttgatgtaacacaaaacaaatatggcttggagatgatccttgcttcatctca |
393 |
Q |
| |
|
| || |||||| |||||||| | |||| |||||| | |||||||||| || ||||||||||| |
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|
| T |
39193398 |
tttgtatataacgttgatgtcagacaagacaaatcaagtttggagatgaacccagcttcatctca |
39193334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 29 - 377
Target Start/End: Complemental strand, 39238718 - 39238373
Alignment:
| Q |
29 |
cagtttgccttgacaggggttgctgataacttcgttgatattgccaagatggaaatcttctatgatcaagcaccagaaggcatgaaaagtctcggaacag |
128 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||| || ||||||||||||| ||||||| |||||||| |||||| |||||| ||||||||||||| |
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|
| T |
39238718 |
cagtttgccttgtcagggattgctgataacttcgtcgaagttgccaagatggagttcttctacgatcaagcgccagaaaccatgaagagtctcggaacag |
39238619 |
T |
|
| Q |
129 |
cgtatttcacaaccagcttaggtttaggaagctttctcagtactgttcttctgtctgctgttgctaatatcacccaaagacatggtcacaagggatggat |
228 |
Q |
| |
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| | | |||| || | ||| ||||| | ||||||||||| | |||| || ||||||||| ||||||||||||||||||||| ||| || ||||| |
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| T |
39238618 |
catgctccacagcctcatatggtctaggaggttttctcagtacattctttctatcagctgttgctgatatcacccaaagacatggtcgcaaaggttggat |
39238519 |
T |
|
| Q |
229 |
attaaataacctaaacacttcccgtttagattattattatgtattcctggcaatactaagcttactcaacttccttttctttgtggttgttgccaagttt |
328 |
Q |
| |
|
|| |||| ||||| |||| || || |||||||||| |||| | ||| || ||||| |||| |||||||||| ||||||||||||||| ||||| |
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| T |
39238518 |
tttggataatgtaaacgtctcccactttgactattattatgcattcattgcagtaataagcctacttaacttcctttgctttgtggttgttgctaagttc |
39238419 |
T |
|
| Q |
329 |
tatgcatataatgttgatgtaacacaaaacaaatatggcttggagatga |
377 |
Q |
| |
|
| || |||||| |||||||| ||| ||||||| |||||||| |||| |
|
|
| T |
39238418 |
tttgtatataa---tgatgtaaaacacaacaaatcaggcttggaaatga |
39238373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 42 - 298
Target Start/End: Complemental strand, 39256674 - 39256418
Alignment:
| Q |
42 |
caggggttgctgataacttcgttgatattgccaagatggaaatcttctatgatcaagcaccagaaggcatgaaaagtctcggaacagcgtatttcacaac |
141 |
Q |
| |
|
||||||||||||||| ||| ||||| ||||| |||||||| | || |||||||||||||||||||||||||||||||| ||| || | || |||||| |
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|
| T |
39256674 |
caggggttgctgatagctttgttgaaattgctaagatggagtttttttatgatcaagcaccagaaggcatgaaaagtcttggagcatcactttccacaac |
39256575 |
T |
|
| Q |
142 |
cagcttaggtttaggaagctttctcagtactgttcttctgtctgctgttgctaatatcacccaaagacatggtcacaagggatggatattaaataaccta |
241 |
Q |
| |
|
||||| ||||| ||| | ||| | ||| | | ||||||| |||||||| ||||||| ||||||||||||||||| || ||||| || ||||| ||| |
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|
| T |
39256574 |
aagcttgggtttgggaggttttgttagtgccttcattctgtcaactgttgctgatatcactcaaagacatggtcacaaaggttggattttgaataatcta |
39256475 |
T |
|
| Q |
242 |
aacacttcccgtttagattattattatgtattcctggcaatactaagcttactcaac |
298 |
Q |
| |
|
|||| || ||||||||||| ||||||| ||| ||| | || |||||||||||||| |
|
|
| T |
39256474 |
aacatctctcgtttagattactattatgctttcatggtagtattaagcttactcaac |
39256418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 15755806 - 15755847
Alignment:
| Q |
86 |
ttctatgatcaagcaccagaaggcatgaaaagtctcggaaca |
127 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||| |||||| |
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|
| T |
15755806 |
ttctatgatcaagcaccagaaagcatgaagagtcttggaaca |
15755847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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