View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12859_low_25 (Length: 400)

Name: NF12859_low_25
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12859_low_25
NF12859_low_25
[»] chr2 (2 HSPs)
chr2 (7-391)||(42788682-42789061)
chr2 (357-387)||(27172818-27172848)
[»] chr8 (15 HSPs)
chr8 (260-391)||(5921160-5921291)
chr8 (260-391)||(5984580-5984711)
chr8 (260-391)||(5887188-5887319)
chr8 (260-391)||(5949052-5949183)
chr8 (306-389)||(5960363-5960446)
chr8 (320-391)||(5849851-5849922)
chr8 (71-160)||(5920637-5920726)
chr8 (71-160)||(5983821-5983910)
chr8 (320-391)||(5843109-5843180)
chr8 (71-160)||(5959303-5959392)
chr8 (48-160)||(5842538-5842650)
chr8 (48-136)||(5849248-5849336)
chr8 (69-160)||(5886857-5886948)
chr8 (58-160)||(5948195-5948297)
chr8 (324-387)||(39916637-39916700)
[»] chr7 (3 HSPs)
chr7 (332-391)||(45676080-45676139)
chr7 (92-130)||(47813441-47813479)
chr7 (341-387)||(48892630-48892676)
[»] chr3 (3 HSPs)
chr3 (337-387)||(44674039-44674089)
chr3 (332-387)||(34626700-34626755)
chr3 (68-155)||(34626429-34626516)
[»] chr1 (4 HSPs)
chr1 (68-155)||(51044664-51044751)
chr1 (91-135)||(49848563-49848607)
chr1 (337-387)||(16127411-16127461)
chr1 (331-384)||(37962871-37962924)
[»] chr5 (1 HSPs)
chr5 (337-387)||(1281333-1281383)
[»] chr4 (1 HSPs)
chr4 (335-387)||(43560551-43560603)


Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 7 - 391
Target Start/End: Original strand, 42788682 - 42789061
Alignment:
Q  7 ttctaggacagtgaatatcagaaaatgtggctaaagaagtgggaacaaaatcatgtgaaagtagtttcttctttatgcttgaattccaaaagttcttcac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42788682 ttctaggacagtgaatatcagaaaatgtggctaaagaagtgggaacaaaatcatgtgaaagtagtttcttctttatgcttgaattccaaaagttcttcac 42788781  T
Q  107 ctcattatctgttcttcctggtaaatgctttgctatctgagcccacctgtccaattccaaaccataatttcttgttaagattgatatcaaagaaagagca 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42788782 ctcattatctgttcttcctggtaaatgctttgctatctgagcccacctgtccaattccaaaccataatttcttgttaagattgatatcaaagaaagagca 42788881  T
Q  207 ataatattgtttaaaaatgaaaataaagatgaattagaggtatatagtatagtatatacctgtttcctagaatggtatgaagttcaataataagagcagc 306  Q
    ||||||||||||||||||||||||||||||||||||||| ||     |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42788882 ataatattgtttaaaaatgaaaataaagatgaattagagtta-----tatagtatatacctgtttcctagaatggtatgaagttcaataataagagcagc 42788976  T
Q  307 ttcttgtggagaaaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccacatctctgc 391  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||| |||||||||||||||    
T  42788977 ttcttgtggagaaaaacttccacgtttcaaatcaggtcttaaataatttatccatctcaacctgcaactttttccacatctctgc 42789061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 387
Target Start/End: Original strand, 27172818 - 27172848
Alignment:
Q  357 tccatcttaatctgcaactctttccacatct 387  Q
    |||||||||||||||||||||||||||||||    
T  27172818 tccatcttaatctgcaactctttccacatct 27172848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 8e-40; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 260 - 391
Target Start/End: Original strand, 5921160 - 5921291
Alignment:
Q  260 atatacctgtttcctagaatggtatgaagttcaataataagagcagcttcttgtggagaaaaacttccacgtttcaaatcaggtcttagataatttatcc 359  Q
    |||||||| || ||||||||| | || ||||| | ||| || |||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||    
T  5921160 atatacctattgcctagaatgctgtggagttctagaatgagtgcagcttcttgatgagagaaacttccacgtttcaaatcaggtcttagataatttatcc 5921259  T
Q  360 atcttaatctgcaactctttccacatctctgc 391  Q
    ||||||||||||||||||||||||||||||||    
T  5921260 atcttaatctgcaactctttccacatctctgc 5921291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 260 - 391
Target Start/End: Original strand, 5984580 - 5984711
Alignment:
Q  260 atatacctgtttcctagaatggtatgaagttcaataataagagcagcttcttgtggagaaaaacttccacgtttcaaatcaggtcttagataatttatcc 359  Q
    |||||||| || ||||||||| | || ||||| | ||| || ||  |||||||  |||| ||||||||||||||||||||||||||||||||||||||||    
T  5984580 atatacctattgcctagaatgttgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggtcttagataatttatcc 5984679  T
Q  360 atcttaatctgcaactctttccacatctctgc 391  Q
    ||||||||||||||||||||||||||||||||    
T  5984680 atcttaatctgcaactctttccacatctctgc 5984711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 260 - 391
Target Start/End: Original strand, 5887188 - 5887319
Alignment:
Q  260 atatacctgtttcctagaatggtatgaagttcaataataagagcagcttcttgtggagaaaaacttccacgtttcaaatcaggtcttagataatttatcc 359  Q
    |||||||| || ||||||||| | || ||||| | ||| || ||  |||||||  |||| ||||||||||||||||||||||||||||||||||||||||    
T  5887188 atatacctattgcctagaatgttgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggtcttagataatttatcc 5887287  T
Q  360 atcttaatctgcaactctttccacatctctgc 391  Q
    |||||||||||||||||||||| |||||||||    
T  5887288 atcttaatctgcaactctttccgcatctctgc 5887319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 260 - 391
Target Start/End: Original strand, 5949052 - 5949183
Alignment:
Q  260 atatacctgtttcctagaatggtatgaagttcaataataagagcagcttcttgtggagaaaaacttccacgtttcaaatcaggtcttagataatttatcc 359  Q
    |||||||| || ||||||||| | || ||||| | ||| || ||  |||||||  |||| ||||||||||||||||||||||||||||||||||||||||    
T  5949052 atatacctattgcctagaatgttgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggtcttagataatttatcc 5949151  T
Q  360 atcttaatctgcaactctttccacatctctgc 391  Q
    |||||||||| |||||||||||||||||||||    
T  5949152 atcttaatcttcaactctttccacatctctgc 5949183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 306 - 389
Target Start/End: Original strand, 5960363 - 5960446
Alignment:
Q  306 cttcttgtggagaaaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccacatctct 389  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5960363 cttcttgttgagagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatctct 5960446  T

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Target: chr8; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 320 - 391
Target Start/End: Original strand, 5849851 - 5849922
Alignment:
Q  320 aaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccacatctctgc 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  5849851 aaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctacaactttttccacatctctgc 5849922  T

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Target: chr8; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 71 - 160
Target Start/End: Original strand, 5920637 - 5920726
Alignment:
Q  71 tttcttctttatgcttgaattccaaaagttcttcacctcattatctgttcttcctggtaaatgctttgctatctgagcccacctgtccaa 160  Q
    ||||||||| ||| |||||||||||||||| ||||||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  5920637 tttcttcttcatggttgaattccaaaagtttttcacctcattatctgttcttccaggtaagtgcttcgcaatctgagcccacctgtccaa 5920726  T

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Target: chr8; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 71 - 160
Target Start/End: Original strand, 5983821 - 5983910
Alignment:
Q  71 tttcttctttatgcttgaattccaaaagttcttcacctcattatctgttcttcctggtaaatgctttgctatctgagcccacctgtccaa 160  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||| || ||||| ||||||||||| ||||||||    
T  5983821 tttcttctttatggttgaattccaaaagtttttcacctcattatctgttcttccaggtaagtgttttgcaatctgagcccatctgtccaa 5983910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 320 - 391
Target Start/End: Original strand, 5843109 - 5843180
Alignment:
Q  320 aaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccacatctctgc 391  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  5843109 aaacttccacgttttaaatcaggtcttagataatttatccatcttaatctacaactttttccacatctctgc 5843180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 71 - 160
Target Start/End: Original strand, 5959303 - 5959392
Alignment:
Q  71 tttcttctttatgcttgaattccaaaagttcttcacctcattatctgttcttcctggtaaatgctttgctatctgagcccacctgtccaa 160  Q
    ||||||||||||| | |||||||||||||| ||||||||||||||||||||||| | ||| || ||||| ||||||||||| ||||||||    
T  5959303 tttcttctttatggtagaattccaaaagtttttcacctcattatctgttcttccagttaagtgttttgcaatctgagcccatctgtccaa 5959392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 5842538 - 5842650
Alignment:
Q  48 ggaacaaaatcatgtgaaagtagtttcttctttatgcttgaattccaaaagttcttcacctcattatctgttcttcctggtaaatgctttgctatctgag 147  Q
    ||||||| |||||  ||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||| || | ||| || || || |    
T  5842538 ggaacaatatcatcagaaaggagttttttctttatgcttgaattccaaaagtttttcacctcattatcggttcttcctggcaagtacttggcaatttgtg 5842637  T
Q  148 cccacctgtccaa 160  Q
    |||| ||||||||    
T  5842638 cccatctgtccaa 5842650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 48 - 136
Target Start/End: Original strand, 5849248 - 5849336
Alignment:
Q  48 ggaacaaaatcatgtgaaagtagtttcttctttatgcttgaattccaaaagttcttcacctcattatctgttcttcctggtaaatgctt 136  Q
    ||||||| |||||  ||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||    
T  5849248 ggaacaatatcatcagaaaggagttttttctttatgcttgaattccaaaagtttttcacctcattatccgttcttcctggcaagtgctt 5849336  T

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Target: chr8; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 69 - 160
Target Start/End: Original strand, 5886857 - 5886948
Alignment:
Q  69 agtttcttctttatgcttgaattccaaaagttcttcacctcattatctgttcttcctggtaaatgctttgctatctgagcccacctgtccaa 160  Q
    ||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| || || || ||||| ||||||||    
T  5886857 agttttttcttcatgcttgaattccaaaagtttttcacctcattatccgttcttcctggtaagtgcttagcaatttgtgcccatctgtccaa 5886948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 5948195 - 5948297
Alignment:
Q  58 catgtgaaagtagtttcttctttatgcttgaattccaaaagttcttcacctcattatctgttcttcctggtaaatgctttgctatctgagcccacctgtc 157  Q
    |||| ||||| | ||| ||||||||| |||||||||||||||| || | |||||||||||||||||| ||||| |||||||| || |||||||| |||||    
T  5948195 catgagaaaggatttttttctttatggttgaattccaaaagttttttatctcattatctgttcttccaggtaagtgctttgcaatttgagcccatctgtc 5948294  T
Q  158 caa 160  Q
    |||    
T  5948295 caa 5948297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 324 - 387
Target Start/End: Complemental strand, 39916700 - 39916637
Alignment:
Q  324 ttccacgtttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccacatct 387  Q
    ||||||| || | ||||||||| |||||||| |||||||| |||||||| || |||||||||||    
T  39916700 ttccacgcttaagatcaggtctgagataattgatccatctcaatctgcagctttttccacatct 39916637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 332 - 391
Target Start/End: Original strand, 45676080 - 45676139
Alignment:
Q  332 ttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccacatctctgc 391  Q
    ||||||||||| |||||||||||||||||||| ||||| |||||||| ||||| ||||||    
T  45676080 ttcaaatcaggccttagataatttatccatctcaatctacaactcttcccacacctctgc 45676139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 130
Target Start/End: Complemental strand, 47813479 - 47813441
Alignment:
Q  92 ccaaaagttcttcacctcattatctgttcttcctggtaa 130  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  47813479 ccaaaagttcttcacttcattatctgttcgtcctggtaa 47813441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 387
Target Start/End: Original strand, 48892630 - 48892676
Alignment:
Q  341 ggtcttagataatttatccatcttaatctgcaactctttccacatct 387  Q
    ||||||||||| || |||||||||| ||||||||| |||||||||||    
T  48892630 ggtcttagatagttcatccatcttagtctgcaactttttccacatct 48892676  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 44674089 - 44674039
Alignment:
Q  337 atcaggtcttagataatttatccatcttaatctgcaactctttccacatct 387  Q
    |||||||||||| |||||||||||||| |||||||||||||| ||||||||    
T  44674089 atcaggtcttaggtaatttatccatctcaatctgcaactcttgccacatct 44674039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 387
Target Start/End: Original strand, 34626700 - 34626755
Alignment:
Q  332 ttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccacatct 387  Q
    |||||||||||||| ||||| || |||||||| ||||| |||||||||||||||||    
T  34626700 ttcaaatcaggtctcagatagttgatccatctcaatctacaactctttccacatct 34626755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 155
Target Start/End: Original strand, 34626429 - 34626516
Alignment:
Q  68 tagtttcttctttatgcttgaattccaaaagttcttcacctcattatctgttcttcctggtaaatgctttgctatctgagcccacctg 155  Q
    |||||||||||| |  ||||||||||||||||| || | ||||||||| ||||| |||||||| ||   ||| || ||||||||||||    
T  34626429 tagtttcttcttcaaacttgaattccaaaagtttttaatctcattatccgttctacctggtaattgtgctgcaatttgagcccacctg 34626516  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 155
Target Start/End: Complemental strand, 51044751 - 51044664
Alignment:
Q  68 tagtttcttctttatgcttgaattccaaaagttcttcacctcattatctgttcttcctggtaaatgctttgctatctgagcccacctg 155  Q
    |||||||||||| |  ||||||||||||||||| || | ||||||||||||||| |||||||| ||   ||| || ||||||||||||    
T  51044751 tagtttcttcttcaaacttgaattccaaaagttttttatctcattatctgttctccctggtaattgtgatgcaatttgagcccacctg 51044664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 49848563 - 49848607
Alignment:
Q  91 tccaaaagttcttcacctcattatctgttcttcctggtaaatgct 135  Q
    ||||| ||||||| | |||||||||||||||||||||||||||||    
T  49848563 tccaatagttctttatctcattatctgttcttcctggtaaatgct 49848607  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 387
Target Start/End: Original strand, 16127411 - 16127461
Alignment:
Q  337 atcaggtcttagataatttatccatcttaatctgcaactctttccacatct 387  Q
    ||||| ||||| |||||| |||||||| ||||| |||||||||||||||||    
T  16127411 atcagttcttaaataattaatccatctcaatctacaactctttccacatct 16127461  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 384
Target Start/End: Complemental strand, 37962924 - 37962871
Alignment:
Q  331 tttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccaca 384  Q
    |||||||||||| || |  ||||||||||||||||| ||||||||||| |||||    
T  37962924 tttcaaatcaggcctcaagtaatttatccatcttaacctgcaactcttcccaca 37962871  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 1281383 - 1281333
Alignment:
Q  337 atcaggtcttagataatttatccatcttaatctgcaactctttccacatct 387  Q
    |||||| |||| ||||||| |||||||||| || |||||||||||||||||    
T  1281383 atcaggacttaaataatttgtccatcttaacctacaactctttccacatct 1281333  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 387
Target Start/End: Original strand, 43560551 - 43560603
Alignment:
Q  335 aaatcaggtcttagataatttatccatcttaatctgcaactctttccacatct 387  Q
    |||||||| || | ||| ||||||||||| ||||| |||||||||||||||||    
T  43560551 aaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatct 43560603  T

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