View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12859_low_28 (Length: 374)
Name: NF12859_low_28
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12859_low_28 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 13447850 - 13447497
Alignment:
| Q |
1 |
aacatgaattttcgaatagtttaaacttaattgttttgattcaatttttggtgtgtacgtggctattctaacttcttaatgtgtttttgcatttatttta |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13447850 |
aacatgaattttcgaatagttttc-cttaattgttttgattcaatttttggtgtgtacgtggctattctaacttcttaatgtgtttttgcatttatttta |
13447752 |
T |
|
| Q |
101 |
atttttcaactgcgagagtgtttatgtcaacacttctgtcagtctgacattgctgttgtttacagtcgaatgaaatggaagaatcctgtaaagctggttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13447751 |
atttttcaactgcgagagtgtttatgtcaacacttctgtcagtctgacattgccgttgtttacagtcgaatgaaatggaagaatcctgtaaagctggttc |
13447652 |
T |
|
| Q |
201 |
ctgtactttaaatctctagattttgtgggatcctgtcnnnnnnnnnnnnnnnngaccgaagattagcccctaatttgtttcattcgctatacataccaag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13447651 |
ctgtactttaaatctctagattttgtgggatcctgtctgtttctttttcttttgaccgaagattagcccctaatttgtttcattcgctatacataccaag |
13447552 |
T |
|
| Q |
301 |
tttggttcgaatgcatttctttcatgtctggttttcaatcatctacaatctgtgc |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13447551 |
tttggttcgaatgcatttctttcatgtctggttttcaatcatctacaatctgtgc |
13447497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 13454249 - 13454185
Alignment:
| Q |
46 |
ttttggtgtgtacgtggctattctaacttcttaatgtgtttttgcatttatttt-aatttttcaa |
109 |
Q |
| |
|
||||| ||||||||||| | |||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
13454249 |
ttttgttgtgtacgtggttcttctaacttcttaatgtgttttcgcatttattttcaatttttcaa |
13454185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University