View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12859_low_29 (Length: 368)
Name: NF12859_low_29
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12859_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 34 - 357
Target Start/End: Complemental strand, 51228988 - 51228670
Alignment:
| Q |
34 |
atatgtatagatgaattataatgaatcactcacacacatgtacaaacaaagaaagttggtaccttggctttcatggattagtcccaccattcacaaatta |
133 |
Q |
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| T |
51228988 |
atatgtatagatgaattataatgaatcactcacacacctgtacaaacaaagaaagttggtaccttggctttcatggattagtcccaccattcacaact-- |
51228891 |
T |
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| Q |
134 |
aatgaatttaggtaggtacttgtcttatatgtagttttttcctttgtggcaatatatattttgattatgagagagttggaaatgtataatggaggagaag |
233 |
Q |
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| T |
51228890 |
---gaatttaggtaggtacttgtcttatatgtagttttttcctttgtggcaatacatattttgattatgagagagttggaaatgtataatggaggagaag |
51228794 |
T |
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| Q |
234 |
gctatggagagaaaaagagttgtaggtggttgagtatataggtaaataagtgattccctttgaaggaatacttaaaatatattaggaaaaattccaagtt |
333 |
Q |
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| T |
51228793 |
gctatggagagaaaaagagttgtaggtggttgagtatataggtaaataagtgattccctttgaaggaatacttaaaatatattaggaaaaattccaagtt |
51228694 |
T |
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| Q |
334 |
ttcacttgtttgttgtgacttcat |
357 |
Q |
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| T |
51228693 |
ttcacttgtttgttgtgacttcat |
51228670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 284 - 357
Target Start/End: Complemental strand, 38047272 - 38047199
Alignment:
| Q |
284 |
tgattccctttgaaggaatacttaaaatatattaggaaaaattccaagttttcacttgtttgttgtgacttcat |
357 |
Q |
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| T |
38047272 |
tgattccctttgaaagaatacttaaaatatattaggaaaaattccaagttttcacttgtttgttgtgacttcat |
38047199 |
T |
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