View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12859_low_32 (Length: 316)
Name: NF12859_low_32
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12859_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 31411232 - 31411534
Alignment:
| Q |
1 |
gaaattgaaacggcatcatcacaggctaacgattttgagcaatgggtgaacgagttgagtgatagctctctaatttggttctcttagccagggttgtatc |
100 |
Q |
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| T |
31411232 |
gaaattgaaacggcatcatcacatgctaatgattttgagcaatgggtgaatgagttgagtgatagctctctaatttggttctcttagctagggttgtatc |
31411331 |
T |
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| Q |
101 |
attttaatttttctgtttcgcagctcttaagttaaatagtttttctgtgagtgtagctgctcctacttagtttgagatcannnnnnncattaccctgatg |
200 |
Q |
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| T |
31411332 |
attttaatttttctgtttcgcagctcctaagttaaatagtttttctgtgagtgtagctgctcctacttagtttgagatcatttttttcattactctgatg |
31411431 |
T |
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| Q |
201 |
aatttcgatgggtgatgtttaagcaaagctacgacttcattgta--nnnnnnnnccaacagagcactcatttctttggatttattgttaaattgatgaaa |
298 |
Q |
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| T |
31411432 |
aacttcgatgggtgatgtttaagcaaagctacgactttattgtattttttttttccaacagagcactcatttctttggatttattgttaaattgatgaaa |
31411531 |
T |
|
| Q |
299 |
act |
301 |
Q |
| |
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||| |
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| T |
31411532 |
act |
31411534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 31408086 - 31408137
Alignment:
| Q |
35 |
ttgagcaatgggtgaacgagttgagtgatagctctctaatttggttctctta |
86 |
Q |
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|||||||||||||||| |||||||||||| |||| ||||| |||| |||||| |
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| T |
31408086 |
ttgagcaatgggtgaatgagttgagtgattgctccctaatatggtgctctta |
31408137 |
T |
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