View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12859_low_36 (Length: 294)
Name: NF12859_low_36
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12859_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 4133849 - 4134035
Alignment:
| Q |
20 |
tcatgtattccatattcatccatcggtttgaagagaaagagtttttgccataaaaaggaatgatgctcaaatatattgcactcgcagcagtagtcctata |
119 |
Q |
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| T |
4133849 |
tcatgtattccatattcatccatcggtttgaagagaaagagtttttgccataaaaaggaatgatgctcaaatatattgcactcgcagcagtagtactata |
4133948 |
T |
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| Q |
120 |
ttagtaccaaaaaggaagaaagagtttttctatattgtgacctctaaaattgcataatagaaaaaccgtcaaatatgagataggatc |
206 |
Q |
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| T |
4133949 |
ttagtaccaaaaaggaagaaagagtttttctatattgtgacctctaaaattgcataatagaaaaactgtcaaatatgagataggatc |
4134035 |
T |
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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 202 - 275
Target Start/End: Original strand, 4134056 - 4134129
Alignment:
| Q |
202 |
ggatccgttgagaccaaattttaacctttcatttcattttaatcaatgacttattattactcactaaaaaccta |
275 |
Q |
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| T |
4134056 |
ggattcgttgacaccaaatcttaacctttcatttcattttaatcaatgacttataattactcactaaaaaccta |
4134129 |
T |
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Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 192 - 270
Target Start/End: Complemental strand, 14826220 - 14826142
Alignment:
| Q |
192 |
atatgagataggatccgttgagaccaaattttaacctttcatttcattttaatcaatgacttattattactcactaaaa |
270 |
Q |
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| T |
14826220 |
atatgagataggatccgttgacaccaaatcttaacctttcatttcattttaatcaatggtttataattactcactaaaa |
14826142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 3654027 - 3654075
Alignment:
| Q |
192 |
atatgagataggatccgttgagaccaaattttaacctttcatttcattt |
240 |
Q |
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| T |
3654027 |
atatgagataggatccgttgacaccaaattatatcctttgatttgattt |
3654075 |
T |
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