View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12859_low_4 (Length: 612)

Name: NF12859_low_4
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12859_low_4
NF12859_low_4
[»] chr5 (7 HSPs)
chr5 (1-598)||(28420877-28421472)
chr5 (15-91)||(18953743-18953819)
chr5 (1-75)||(31022291-31022365)
chr5 (12-62)||(33622433-33622483)
chr5 (1-65)||(31477312-31477376)
chr5 (1-52)||(23927031-23927083)
chr5 (35-99)||(35390841-35390905)
[»] chr2 (5 HSPs)
chr2 (8-91)||(30463530-30463613)
chr2 (2-106)||(12094287-12094393)
chr2 (1-85)||(19031618-19031703)
chr2 (20-85)||(23150931-23150995)
chr2 (20-85)||(23562188-23562252)
[»] chr8 (4 HSPs)
chr8 (20-131)||(37296363-37296474)
chr8 (3-65)||(21694203-21694265)
chr8 (2-62)||(22282044-22282105)
chr8 (20-52)||(9251706-9251738)
[»] chr4 (5 HSPs)
chr4 (29-110)||(8974444-8974525)
chr4 (1-75)||(16643449-16643522)
chr4 (1-65)||(13033522-13033587)
chr4 (11-133)||(9184552-9184674)
chr4 (1-52)||(53446834-53446886)
[»] chr3 (8 HSPs)
chr3 (8-75)||(3559049-3559116)
chr3 (1-97)||(50097813-50097909)
chr3 (1-53)||(36602469-36602522)
chr3 (16-66)||(31302220-31302270)
chr3 (7-53)||(35055516-35055562)
chr3 (1-67)||(36639793-36639858)
chr3 (1-64)||(10848121-10848184)
chr3 (1-52)||(15242820-15242872)
[»] chr7 (2 HSPs)
chr7 (34-98)||(6445310-6445374)
chr7 (1-108)||(1375491-1375599)
[»] chr1 (6 HSPs)
chr1 (1-53)||(31066266-31066318)
chr1 (2-75)||(170522-170594)
chr1 (20-74)||(9016819-9016873)
chr1 (1-75)||(18732548-18732622)
chr1 (1-53)||(16517620-16517670)
chr1 (1-53)||(30894109-30894161)


Alignment Details
Target: chr5 (Bit Score: 481; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 598
Target Start/End: Complemental strand, 28421472 - 28420877
Alignment:
Q  1 gtctcagttgctctgagcaccccctcacggagaaggggtgtgttgcgagtaatattgccaaatgcggaatttgggttgtaattgtattggggctaagtag 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||     
T  28421472 gtctcagttgctccgagcaccccctcacggagaaggggtgtgttgcgagtaatattgccaaatgcgga-tttgggttgtaattgtattgggcctaagtaa 28421374  T
Q  101 ttgggcctaaaggctttggccgatctagaacaacaatatttcctcggatattcgcagaaatggatcaataattttctcagaaatcaatgtttatgacgaa 200  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||| |||||||    
T  28421373 ttgggcataaaggctttggccgatccagaacaacaatatttcctcggaaattcgcagaaatagatcaataatttcctcagaaatcaatgtttctgacgaa 28421274  T
Q  201 ttcaggatgtttttcgacgaataaattcataggaaaaccagtcattttgtgtattgttgttaacaatggttcctacttaaattgagatnnnnnnnntgtt 300  Q
    || |||||||||||| ||||||||||||||||||||| |||| |||| ||||| |||||||||||||| ||| |||||||||||||||        ||||    
T  28421273 tttaggatgtttttcaacgaataaattcataggaaaatcagttatttcgtgtagtgttgttaacaatgattcatacttaaattgagataaaaaaa-tgtt 28421175  T
Q  301 ttctctcttaataaggacagtgctactaatgactttggagcttaattctatcaaacttattggactattgtcaacgaagatgttaccaatgcagtttggc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28421174 ttctctcttaataaggacagtgctactaatgactttggagcttaattctatcaaacttattggactattgtcaacgaagatgttaccaatgcagtttggc 28421075  T
Q  401 acttcttcacctctggttggatgttgccaaacttcactgctaacactttggtgttgattcgtgaatcactaaatgttgaggccgtgaagcactctagacc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28421074 acttcttcacctctggttggatgttgccaaacttcactgctaacactttggtgttgattcgtgaatcactaaatgttgaggccgtgaagcactctagacc 28420975  T
Q  501 tatatcaatggtcaatttcaagttcgagataattacaaaggtgcttgctgttagattagctcaaactatgcctttcatcacctctaaggagcaaaatg 598  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28420974 tatatcaatggtcaatttcaagttcgagataattacaaaggtgattgctattagattagctcaaattatgcctttcatcacctctaaggagcaaaatg 28420877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 18953743 - 18953819
Alignment:
Q  15 gagcaccccctcacggagaaggggtgtgttgcgagtaatattgccaaatgcggaatttgggttgtaattgtattggg 91  Q
    ||||||||| |||||| || |||||||||||||||||||||  |||||||| ||||||| | |||| ||||||||||    
T  18953743 gagcaccccttcacggggagggggtgtgttgcgagtaatatccccaaatgcagaatttgtgctgtatttgtattggg 18953819  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 31022365 - 31022291
Alignment:
Q  1 gtctcagttgctctgagcaccccc-tcacggagaaggggtgtgttgcgagtaatattgccaaatgcggaatttggg 75  Q
    ||||||||||||| | |||||||| || ||| |||||||||||||||||||||| ||||||||||| | |||||||    
T  31022365 gtctcagttgctccgtgcacccccctcgcggggaaggggtgtgttgcgagtaat-ttgccaaatgcagtatttggg 31022291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 33622483 - 33622433
Alignment:
Q  12 tctgagcaccccctcacggagaaggggtgtgttgcgagtaatattgccaaa 62  Q
    |||| |||||||||||||  |||||||||||| ||||||||| ||||||||    
T  33622483 tctgtgcaccccctcacgtggaaggggtgtgtcgcgagtaattttgccaaa 33622433  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 31477376 - 31477312
Alignment:
Q  1 gtctcagttgctctgagcaccccc-tcacggagaaggggtgtgttgcgagtaatattgccaaatgc 65  Q
    ||||||||||||| |||||||||| |  |||||||||||| ||||||||||||  |||||||||||    
T  31477376 gtctcagttgctccgagcaccccccttgcggagaaggggtatgttgcgagtaa-gttgccaaatgc 31477312  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 23927083 - 23927031
Alignment:
Q  1 gtctcagttgctctgagcaccccctcacggag-aaggggtgtgttgcgagtaa 52  Q
    ||||||||||||| ||| ||||||||| || | ||||||||||||||||||||    
T  23927083 gtctcagttgctccgagtaccccctcatgggggaaggggtgtgttgcgagtaa 23927031  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 35390841 - 35390905
Alignment:
Q  35 ggggtgtgttgcgagtaatattgccaaatgcggaatttgggttgtaattgtattggggctaagta 99  Q
    |||| |||||||||||||| ||||||||||   ||||| ||||||| |||||||||  |||||||    
T  35390841 ggggggtgttgcgagtaatgttgccaaatgtaaaatttaggttgtatttgtattggacctaagta 35390905  T

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Target: chr2 (Bit Score: 56; Significance: 7e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 30463613 - 30463530
Alignment:
Q  8 ttgctctgagcaccccctcacggagaaggggtgtgttgcgagtaatattgccaaatgcggaatttgggttgtaattgtattggg 91  Q
    ||||||||||||||||||| | | |||||||| ||||||||||||||||||||||||| |||||||||||||  ||||||||||    
T  30463613 ttgctctgagcaccccctcgcagggaaggggtatgttgcgagtaatattgccaaatgcagaatttgggttgtgtttgtattggg 30463530  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 12094287 - 12094393
Alignment:
Q  2 tctcagttgctctgagcaccccc--tcacggagaaggggtgtgttgcgagtaatattgccaaatgcggaatttgggttgtaattgtattggggctaagta 99  Q
    |||| ||| ||||||||||||||  || |||||||||||||||||||||||||||||||||||||  | |||||||||||  | |||||||| ||||| |    
T  12094287 tctctgtttctctgagcaccccccctcgcggagaaggggtgtgttgcgagtaatattgccaaatgtagtatttgggttgtggtggtattgggcctaagca 12094386  T
Q  100 gttgggc 106  Q
     ||||||    
T  12094387 attgggc 12094393  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 19031618 - 19031703
Alignment:
Q  1 gtctcagttgctctgagcaccccc-tcacggagaaggggtgtgttgcgagtaatattgccaaatgcggaatttgggttgtaattgt 85  Q
    ||||| ||||||| |||||||||| ||  || |||||||||||||||||||||||||| | ||||||| ||||||  |||||||||    
T  19031618 gtctctgttgctccgagcacccccgtcgtggggaaggggtgtgttgcgagtaatattgtctaatgcggtatttggactgtaattgt 19031703  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 23150931 - 23150995
Alignment:
Q  20 ccccctcacggagaaggggtgtgttgcgagtaatattgccaaatgcggaatttgggttgtaattgt 85  Q
    ||||||| ||| ||||||||||||||||||||| | |||||||||||| ||||||| || ||||||    
T  23150931 ccccctctcggggaaggggtgtgttgcgagtaa-actgccaaatgcggtatttgggctggaattgt 23150995  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 23562188 - 23562252
Alignment:
Q  20 ccccctcacggagaaggggtgtgttgcgagtaatattgccaaatgcggaatttgggttgtaattgt 85  Q
    ||||||| ||| ||||||||||||||||||||| | |||||||||||| ||||||| || ||||||    
T  23562188 ccccctctcggggaaggggtgtgttgcgagtaa-actgccaaatgcggtatttgggctggaattgt 23562252  T

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Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 37296474 - 37296363
Alignment:
Q  20 ccccctcacggagaaggggtgtgttgcgagtaatattgccaaatgcggaatttgggttgtaattgtattggggctaagtagttgggcctaaaggctttgg 119  Q
    ||||||| |||||| | ||||||||||||||||||||| ||||||||  ||||||| |||| |||||||| | ||||| | ||||||||||||||||| |    
T  37296474 ccccctcgcggagatgcggtgtgttgcgagtaatattgtcaaatgcgctatttgggatgtagttgtattgagcctaagcaattgggcctaaaggctttag 37296375  T
Q  120 ccgatctagaac 131  Q
     ||||| |||||    
T  37296374 tcgatccagaac 37296363  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 21694203 - 21694265
Alignment:
Q  3 ctcagttgctctgagcacc-ccctcacggagaaggggtgtgttgcgagtaatattgccaaatgc 65  Q
    |||| |||||| ||||||| ||||| ||||||| |||||||||||||||||| |||||||||||    
T  21694203 ctcaattgctccgagcaccaccctcgcggagaaagggtgtgttgcgagtaat-ttgccaaatgc 21694265  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 22282105 - 22282044
Alignment:
Q  2 tctcagttgctctgagca--ccccctcacggagaaggggtgtgttgcgagtaatattgccaaa 62  Q
    |||||||||||  |||||  |||||| |||||||||||||||||||||||||| |||||||||    
T  22282105 tctcagttgcttcgagcatccccccttacggagaaggggtgtgttgcgagtaa-attgccaaa 22282044  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 9251706 - 9251738
Alignment:
Q  20 ccccctcacggagaaggggtgtgttgcgagtaa 52  Q
    |||||||||| ||||||||||||||||||||||    
T  9251706 ccccctcacgaagaaggggtgtgttgcgagtaa 9251738  T

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Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 8974444 - 8974525
Alignment:
Q  29 ggagaaggggtgtgttgcgagtaatattgccaaatgcggaatttgggttgtaattgtattggggctaagtagttgggcctaa 110  Q
    ||||||||||||||||||||||||||||| ||||| |  |||||||| |||| |||||||||| ||||||| ||||||||||    
T  8974444 ggagaaggggtgtgttgcgagtaatattgtcaaattcataatttgggctgtatttgtattgggtctaagtaattgggcctaa 8974525  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 16643522 - 16643449
Alignment:
Q  1 gtctcagttgctctgagcaccccctcacggagaaggggtgtgttgcgagtaatattgccaaatgcggaatttggg 75  Q
    ||||||||||||| |||||||| ||| |||||||||||||||||||||||||| || |||||||| | |||||||    
T  16643522 gtctcagttgctccgagcaccctctcgcggagaaggggtgtgttgcgagtaat-ttcccaaatgcagcatttggg 16643449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 13033587 - 13033522
Alignment:
Q  1 gtctcagttgctctgagcaccccc--tcacggagaaggggtgtgttgcgagtaatattgccaaatgc 65  Q
    ||||||||||||  ||||||||||  |||||||||||||||||||||||||||| ||| ||||||||    
T  13033587 gtctcagttgctacgagcaccccccctcacggagaaggggtgtgttgcgagtaa-atttccaaatgc 13033522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 9184552 - 9184674
Alignment:
Q  11 ctctgagcaccccctcacggagaaggggtgtgttgcgagtaatattgccaaatgcggaatttgggttgtaattgtattggggctaagtagttgggcctaa 110  Q
    |||||||||||||||| ||||||     ||||||| ||||||  ||||||||||||||||||||| |    |||||||||| || |||| |||| |||||    
T  9184552 ctctgagcaccccctcgcggagatttcatgtgttgagagtaaagttgccaaatgcggaatttgggcttggtttgtattgggcctgagtaattggacctaa 9184651  T
Q  111 aggctttggccgatctagaacaa 133  Q
    | |||||||  | ||||||||||    
T  9184652 atgctttggttggtctagaacaa 9184674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 53446834 - 53446886
Alignment:
Q  1 gtctcagttgctctgagca-ccccctcacggagaaggggtgtgttgcgagtaa 52  Q
    ||||||||||||||||||| ||||||  |||| ||||||||||||| ||||||    
T  53446834 gtctcagttgctctgagcatcccccttgcggataaggggtgtgttgtgagtaa 53446886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 3559116 - 3559049
Alignment:
Q  8 ttgctctgagcaccccctcacggagaaggggtgtgttgcgagtaatattgccaaatgcggaatttggg 75  Q
    |||||||| |||||||||| ||| |||||||||||||||||||||| ||||||||||||| |||||||    
T  3559116 ttgctctgtgcaccccctcgcggggaaggggtgtgttgcgagtaatgttgccaaatgcggtatttggg 3559049  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 50097909 - 50097813
Alignment:
Q  1 gtctcagttgctctgagcacccc-ctcacggagaaggggtgtgttgcgagtaatattgccaaatgcggaatttgggttgtaattgtattggggctaag 97  Q
    ||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||| || |||| |||||| | |||| |||| |||||| |||||    
T  50097909 gtctcagttgctccgagcacctctctcacggagaaggggtgtgttgcgagtaatattgtcagatgcagaatttagattgt-attgcattgggcctaag 50097813  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 36602522 - 36602469
Alignment:
Q  1 gtctcagttgctctgagcaccccc-tcacggagaaggggtgtgttgcgagtaat 53  Q
    ||||||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  36602522 gtctcagtttctctgagcacccccctcgcggagaaggggtgtgttgcgagtaat 36602469  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 31302270 - 31302220
Alignment:
Q  16 agcaccccctcacggagaaggggtgtgttgcgagtaatattgccaaatgcg 66  Q
    |||||||||||||   ||||||||||||||| |||||||||||||||||||    
T  31302270 agcaccccctcacaacgaaggggtgtgttgcaagtaatattgccaaatgcg 31302220  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 35055516 - 35055562
Alignment:
Q  7 gttgctctgagcaccccctcacggagaaggggtgtgttgcgagtaat 53  Q
    |||||||| | |||||||||||||| ||||| |||||||||||||||    
T  35055516 gttgctcttaacaccccctcacggaaaagggatgtgttgcgagtaat 35055562  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 36639793 - 36639858
Alignment:
Q  1 gtctcagttgctctgagcaccccctcacggagaaggggtgtgttgcgagtaatattgccaaatgcgg 67  Q
    |||| |||||||  |||||||||||| | ||||||||||||||| ||||||| | ||||||||||||    
T  36639793 gtcttagttgcttcgagcaccccctcgcagagaaggggtgtgttacgagtaa-actgccaaatgcgg 36639858  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 10848184 - 10848121
Alignment:
Q  1 gtctcagttgctctgagcacc-ccctcacggagaaggggtgtgttgcgagtaatattgccaaatg 64  Q
    |||||| |||||| ||||||| ||||| ||| |||||||||||| ||||||||| ||||||||||    
T  10848184 gtctcaattgctccgagcaccgccctcgcggggaaggggtgtgtcgcgagtaat-ttgccaaatg 10848121  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 15242872 - 15242820
Alignment:
Q  1 gtctcagttgctctgagcaccc-cctcacggagaaggggtgtgttgcgagtaa 52  Q
    |||||||||||||   |||||| |||| |||||||||||||||||||||||||    
T  15242872 gtctcagttgctccatgcaccctcctcgcggagaaggggtgtgttgcgagtaa 15242820  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 6445310 - 6445374
Alignment:
Q  34 aggggtgtgttgcgagtaatattgccaaatgcggaatttgggttgtaattgtattggggctaagt 98  Q
    ||||||||||||||||||||||| |||||||| ||||||||| |||| |||||||||| ||||||    
T  6445310 aggggtgtgttgcgagtaatattaccaaatgcagaatttgggctgtatttgtattgggcctaagt 6445374  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 1375491 - 1375599
Alignment:
Q  1 gtctcagttgctctgagcaccccctcacggagaaggggtgtgttgcgagtaatattgccaaatgcggaatttgggttgtaattg-tattggggctaagta 99  Q
    ||||| ||||||| ||| || ||||| ||| ||||| | ||||||||||||||| | |||||||| | |||||||||||||||| ||||||| ||||| |    
T  1375491 gtctctgttgctccgagtactccctcgcggggaaggagagtgttgcgagtaatagtaccaaatgcagtatttgggttgtaattgttattgggcctaagca 1375590  T
Q  100 gttgggcct 108  Q
     ||||||||    
T  1375591 attgggcct 1375599  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 31066318 - 31066266
Alignment:
Q  1 gtctcagttgctctgagcaccccctcacggagaaggggtgtgttgcgagtaat 53  Q
    ||||||||||||| |||||||||| | ||||||||||||||||||||||||||    
T  31066318 gtctcagttgctccgagcacccccccgcggagaaggggtgtgttgcgagtaat 31066266  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 170594 - 170522
Alignment:
Q  2 tctcagttgctctgagcaccccctcacggagaaggggtgtgttgcgagtaatattgccaaatgcggaatttggg 75  Q
    |||||||||||| ||||||| | || |||||||||||||||||||||||||| ||| ||||||| | |||||||    
T  170594 tctcagttgctccgagcaccacttcgcggagaaggggtgtgttgcgagtaat-ttgtcaaatgcagcatttggg 170522  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 9016819 - 9016873
Alignment:
Q  20 ccccctcacggagaaggggtgtgttgcgagtaatattgccaaatgcggaatttgg 74  Q
    ||||||| ||| || ||| |||||||||||||||||| |||||||||||||||||    
T  9016819 ccccctcgcggggaggggatgtgttgcgagtaatatttccaaatgcggaatttgg 9016873  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 18732548 - 18732622
Alignment:
Q  1 gtctcagttgctctgagcaccccc-tcacggagaaggggtgtgttgcgagtaatattgccaaatgcggaatttggg 75  Q
    ||||||||||||| |||||||||| |   |||||||||||||||||| |||||| ||||||||||| | |||||||    
T  18732548 gtctcagttgctccgagcaccccccttgtggagaaggggtgtgttgcaagtaat-ttgccaaatgctgcatttggg 18732622  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 16517620 - 16517670
Alignment:
Q  1 gtctcagttgctctgagcaccccctcacggagaaggggtgtgttgcgagtaat 53  Q
    ||||||||||||| ||||  |||||| |||||||| |||||||||||||||||    
T  16517620 gtctcagttgctccgagc--cccctcgcggagaagaggtgtgttgcgagtaat 16517670  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 30894109 - 30894161
Alignment:
Q  1 gtctcagttgctctgagcaccccctcacggagaaggggtgtgttgcgagtaat 53  Q
    |||||| |||||| | |||||||||| ||  ||||||||||||||||||||||    
T  30894109 gtctcatttgctccgtgcaccccctcgcgaggaaggggtgtgttgcgagtaat 30894161  T

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