View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12859_low_40 (Length: 273)
Name: NF12859_low_40
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12859_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 758686 - 758433
Alignment:
| Q |
1 |
agaaagaagaagatcacacctaccaagtaatatatattttcttttctttttgattcctcttgttgatctgttttagtttatcacttcttatttcattctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
758686 |
agaaagaagaagatcacacctaccaagtaatatatattttcttttctttttgattcctcttgttgatctgttttagtttatcacttcttatttcattctt |
758587 |
T |
|
| Q |
101 |
ctcatgaacattaagattctagcataaatacatgttggaatgattgattaattaattaatttgattagcataactaagatccagcctccatgagtcatca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
758586 |
ctcatgaacattaagattctagcataaatacatgttggaatgattgattaattaattaatttgattagcataactaagatctagcctccatgagtcatca |
758487 |
T |
|
| Q |
201 |
taattaatatattaattattaacaacaaccttaatcattacaatttctgatatc |
254 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
758486 |
taattaatatattaattatcaacaacaaccttaatcattacaatttgtgatatc |
758433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 36988685 - 36988938
Alignment:
| Q |
1 |
agaaagaagaagatcacacctaccaagtaatatatattttcttttctttttgattcctcttgttgatctgttttagtttatcacttcttatttcattctt |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36988685 |
agaaagaagaagattacacctaccaagtaatatatattttattttctttttaattcctcttgttgatctgttttagtttatcacttcttatttcattctt |
36988784 |
T |
|
| Q |
101 |
ctcatgaacattaagattctagcataaatacatgttggaatgattgattaattaattaatttgattagcataactaagatccagcctccatgagtcatca |
200 |
Q |
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| T |
36988785 |
ctcatgaacattaagattctagcataaatacatgttggaataattgattaattaattaatttgattagcataactaagatctagcctccatgagtcatca |
36988884 |
T |
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| Q |
201 |
taattaatatattaattattaacaacaaccttaatcattacaatttctgatatc |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36988885 |
taattaatatattaattattaacaacaaccttaatcattacaatttgtgatatc |
36988938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 37014124 - 37014377
Alignment:
| Q |
1 |
agaaagaagaagatcacacctaccaagtaatatatattttcttttctttttgattcctcttgttgatctgttttagtttatcacttcttatttcattctt |
100 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37014124 |
agaaagaagaagattacacctaccaagtaatatatattttattttctttttaattcctcttgttgatctgttttagtttatcacttcttatttcattctt |
37014223 |
T |
|
| Q |
101 |
ctcatgaacattaagattctagcataaatacatgttggaatgattgattaattaattaatttgattagcataactaagatccagcctccatgagtcatca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37014224 |
ctcatgaacattaagattctagcataaatacatgttggaataattgattaattaattaatttgattagcataactaagatctagcctccatgagtcatca |
37014323 |
T |
|
| Q |
201 |
taattaatatattaattattaacaacaaccttaatcattacaatttctgatatc |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37014324 |
taattaatatattaattattaacaacaaccttaatcattacaatttgtgatatc |
37014377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 36443880 - 36443810
Alignment:
| Q |
28 |
taatatatattttcttttctttttgattcctcttgttgatctgttttagtttatcacttcttatttcattc |
98 |
Q |
| |
|
||||||||||||||| |||||||| ||||| |||||||| ||| |||||||||||||||||| ||||||| |
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| T |
36443880 |
taatatatattttctcttctttttaattccctttgttgatttgtcttagtttatcacttcttacttcattc |
36443810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 254
Target Start/End: Complemental strand, 36443693 - 36443650
Alignment:
| Q |
211 |
attaattattaacaacaaccttaatcattacaatttctgatatc |
254 |
Q |
| |
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||||||||||||||||||||||| | |||||||||| ||||||| |
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| T |
36443693 |
attaattattaacaacaaccttagttattacaatttgtgatatc |
36443650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 2 - 133
Target Start/End: Complemental strand, 19181062 - 19180933
Alignment:
| Q |
2 |
gaaagaagaagatcacacctaccaagtaatatatattttcttttctttttgattcctcttgttgatctgttttagtttatcacttcttatttcattcttc |
101 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
19181062 |
gaaagaagaagatcac--ctaccaagtaatatatattttcttttctttttaattcctcttgttgatctgttttagattatcacttcttacttcattcttc |
19180965 |
T |
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| Q |
102 |
tcatgaacattaagattctagcataaatacat |
133 |
Q |
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||||||||| ||||||||||||||| |||||| |
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| T |
19180964 |
tcatgaacactaagattctagcatacatacat |
19180933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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