View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12859_low_41 (Length: 271)
Name: NF12859_low_41
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12859_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 43377837 - 43377600
Alignment:
| Q |
17 |
cagagaaacaaaccttcacacaatcatatctatgtatcaaatttatcacttcatcataattccacaacaatgcttccttagatgatgcaccaggatatag |
116 |
Q |
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| T |
43377837 |
cagagaaacaaaccttcacacaatcatatctatgtatcaaatttatcacttcatcataattccacaacaatgcttccttagatgatgcaccaggatatag |
43377738 |
T |
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| Q |
117 |
agacaaatgacaacaaaccacaactttttgtttcaattttgttgcttcttgaagaatattattcaaccattccatttgtttctttccaatacctccattg |
216 |
Q |
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| T |
43377737 |
agacaaatgacaacaaaccacaactttttgtttcaattttgttgcttcttgaagaatattattcaaccattctatttgtttctttccaatacctccattg |
43377638 |
T |
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| Q |
217 |
aacatgagaaaccttctttcaagtccaaccaaacctgt |
254 |
Q |
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| T |
43377637 |
aacatgagaaaccttctttcaagtccaactaaacctgt |
43377600 |
T |
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Back To:
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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 239
Target Start/End: Complemental strand, 34428800 - 34428604
Alignment:
| Q |
43 |
tatctatgtatcaaatttatcacttcatcataattccacaacaatgcttccttagatgatgcaccaggatatagagacaaatgacaacaaaccacaactt |
142 |
Q |
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| T |
34428800 |
tatctgtgtatcaaattcatcacttcatcacaattccacagtagcgcctcctcggatgttgcacaaggatctagaggcagatggcatgtgacaaccactt |
34428701 |
T |
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| Q |
143 |
tttgtttcaattttgttgcttcttgaagaatattattcaaccattccatttgtttctttccaatacctccattgaacatgagaaaccttctttcaag |
239 |
Q |
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| T |
34428700 |
tctgtttcaatttggttgcatcctggagaataccatccaaccattccatctgttcctttccaacacctccgttaaacataagaaaccttctttcaag |
34428604 |
T |
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