View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12859_low_43 (Length: 257)
Name: NF12859_low_43
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12859_low_43 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 31411159 - 31410911
Alignment:
| Q |
1 |
ccttggtgacgatgactcacaactttcctccgatgaagaaggctccggtgattcccgtttcaaaaccacctccttctctggctctggtgtaaacacatca |
100 |
Q |
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| T |
31411159 |
ccttggtgacgatgactcacaactttcctccgatgaagaaggctccggtgattcccgtttcaaaaccacctccttctctggctctggtgtaaacacatca |
31411060 |
T |
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| Q |
101 |
gagccaatgaggtggggaaaattaagcttggcctttcggccacgcatcttaaaagcagctttgtcgtaagccaaagctgcttcctcctcagtcacataag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31411059 |
gagccaatgaggtggggaaaattaagcttggcctttcggccacgcatcttaaaagcagctttgtcgtaagccaaagctgcttcctcctcagtcacataag |
31410960 |
T |
|
| Q |
201 |
taccaagccaaaccctagcaccattcttttttggatctcttatctctgc |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31410959 |
taccaagccaaaccctagcaccattcttttttggatctcttatctctgc |
31410911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 4 - 246
Target Start/End: Complemental strand, 31415123 - 31414875
Alignment:
| Q |
4 |
tggtgacgatgactcacaactttcctccgatgaagaag------gctccggtgattcccgtttcaaaaccacctccttctctggctctggtgtaaacaca |
97 |
Q |
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||||||| ||||||||||||| ||||||||||||||| |||| |||||||||| |||||||||||||||| |||||||||| | |||| ||||| |
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| T |
31415123 |
tggtgacactgactcacaacttccctccgatgaagaagaagaaggctcgggtgattcccttttcaaaaccacctccctctctggctcagatgtagacaca |
31415024 |
T |
|
| Q |
98 |
tcagagccaatgaggtggggaaaattaagcttggcctttcggccacgcatcttaaaagcagctttgtcgtaagccaaagctgcttcctcctcagtcacat |
197 |
Q |
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| T |
31415023 |
tcagagccaatgaggtggggaaaattaagcttggcctttcggcctcgcatcttaaaagcagctttgtcgtaagccaaagctgcttcctcctcagtcacat |
31414924 |
T |
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| Q |
198 |
aagtaccaagccaaaccctagcaccattcttttttggatctcttatctc |
246 |
Q |
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| T |
31414923 |
acgttccaagccaaactctagcaccattcttttttggatctcttatctc |
31414875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 4 - 249
Target Start/End: Complemental strand, 31407982 - 31407734
Alignment:
| Q |
4 |
tggtgacgatgactcacaactttcctccgatgaagaag---gctccggtgattcccgtttcaaaaccacctccttctctggctctggtgtaaacacatca |
100 |
Q |
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||||||||||||||||||||| || ||||||||||||| |||| |||||||||||||||||| |||||| | ||| || ||| | | |||||||| |
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| T |
31407982 |
tggtgacgatgactcacaactatcttccgatgaagaagaaggctctggtgattcccgtttcaaagccaccttcctctttgactccgacatgtacacatca |
31407883 |
T |
|
| Q |
101 |
gagccaatgaggtggggaaaattaagcttggcctttcggccacgcatcttaaaagcagctttgtcgtaagccaaagctgcttcctcctcagtcacataag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||| |||||||||||||||||||||||| |
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| T |
31407882 |
gagccaatgaggtggggaaaattaagcttggccttttggccacgcatcttgaaagcagctttatcgtaagcaaaacctgcttcctcctcagtcacataag |
31407783 |
T |
|
| Q |
201 |
taccaagccaaaccctagcaccattcttttttggatctcttatctctgc |
249 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31407782 |
taccaagccaaaccctagcaccattcttttttgggtctcttatctctgc |
31407734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 249
Target Start/End: Complemental strand, 1008742 - 1008593
Alignment:
| Q |
100 |
agagccaatgaggtggggaaaattaagcttggcctttcggccacgcatcttaaaagcagctttgtcgtaagccaaagctgcttcctcctcagtcacataa |
199 |
Q |
| |
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|||||| || |||||||||||||| |||||||| |||| ||||| ||||| |||| ||| | || ||||||||| | ||||| || ||||| | || |
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| T |
1008742 |
agagccgataaggtggggaaaattgagcttggcttttctaccacggatcttgaaagtggctctatcataagccaaaccagcttcttcttcagtttcgtac |
1008643 |
T |
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| Q |
200 |
gtaccaagccaaaccctagcaccattcttttttggatctcttatctctgc |
249 |
Q |
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|| ||||||||||| ||||| |||||||| |||||||| ||||||||||| |
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| T |
1008642 |
gttccaagccaaactctagctccattcttctttggatcccttatctctgc |
1008593 |
T |
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