View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12859_low_49 (Length: 242)
Name: NF12859_low_49
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12859_low_49 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 971646 - 971870
Alignment:
| Q |
18 |
aaagtaggttttttaaccttaggaataagacaaagaaaagtgtgattgatattaccaggatctccattgttattaagaatattaagggcatactcaataa |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
971646 |
aaagtagattttttaaccttaggaataagacaaagaaaagtgtgattgatattaccaggatctccattgttattaagaacattaagggcatactcaataa |
971745 |
T |
|
| Q |
118 |
tctcagtaccaatttctgcccaataggattgatagaacagggcaggtaaaccatctggtccaggggcagctgaacttttcatctgtctaatagcctcaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
971746 |
tctcagtaccaatttctgcccaataggattgatagaacagggcaggtaaaccatctggtccaggggcagctgaacttttcatctgtctaatagcctcaaa |
971845 |
T |
|
| Q |
218 |
aacctcggtagcagtgaaatcttgc |
242 |
Q |
| |
|
|||||| |||||||||||||||||| |
|
|
| T |
971846 |
aacctcagtagcagtgaaatcttgc |
971870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 43136664 - 43136869
Alignment:
| Q |
18 |
aaagtaggttttttaaccttaggaataagacaaagaaaagtgtgattgatattaccaggatctccattgttattaagaatattaagggcatactcaataa |
117 |
Q |
| |
|
|||||||| ||||| | ||||| |||||||| |||| |||||| |||||||||||| ||| | ||||| ||| ||||||||||| || | | | | | |
|
|
| T |
43136664 |
aaagtagggtttttgattttaggtataagacagagaagagtgtggttgatattaccaatatcacaattgtgatttagaatattaagaacaaaattagtga |
43136763 |
T |
|
| Q |
118 |
tctcagtaccaatttctgcccaataggattgatagaacagggcaggtaaaccatctggtccaggggcagctgaacttttcatctgtctaatagcctcaaa |
217 |
Q |
| |
|
| |||| |||||| || |||| || ||||||||||| ||||| || | ||||| || || || ||||| | |||||||| ||| ||||||| ||||| |
|
|
| T |
43136764 |
tatcagaaccaatatcctcccagtaagattgatagaaaagggctggaagcccatcagggcctggagcagcaaagcttttcatttgtttaatagcatcaaa |
43136863 |
T |
|
| Q |
218 |
aacctc |
223 |
Q |
| |
|
|||||| |
|
|
| T |
43136864 |
aacctc |
43136869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 163
Target Start/End: Complemental strand, 6523179 - 6523052
Alignment:
| Q |
36 |
ttaggaataagacaaagaaaagtgtgattgatattaccaggatctccattgttattaagaatattaagggcatactcaataatctcagtaccaatttctg |
135 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||||| | ||||| || |||||| |||| ||| | || ||| ||||||| | |
|
|
| T |
6523179 |
ttaggaataagacaaaggtgagtgtgattgatattaccaggatccccattatggttaaggattttaaggacataatcagtgatatcattaccaatgacct |
6523080 |
T |
|
| Q |
136 |
cccaataggattgatagaacagggcagg |
163 |
Q |
| |
|
||||||| ||||||||||| || ||||| |
|
|
| T |
6523079 |
cccaataagattgatagaatagagcagg |
6523052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University