View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12859_low_5 (Length: 599)

Name: NF12859_low_5
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12859_low_5
NF12859_low_5
[»] chr8 (14 HSPs)
chr8 (19-590)||(5886748-5887319)
chr8 (376-590)||(5842966-5843180)
chr8 (376-590)||(5849708-5849922)
chr8 (436-590)||(5984557-5984711)
chr8 (436-590)||(5949029-5949183)
chr8 (440-588)||(5960298-5960446)
chr8 (451-590)||(5921152-5921291)
chr8 (19-220)||(5849157-5849361)
chr8 (19-220)||(5842447-5842651)
chr8 (70-220)||(5983761-5983911)
chr8 (85-220)||(5948163-5948298)
chr8 (66-220)||(5920573-5920727)
chr8 (19-220)||(5959189-5959393)
chr8 (513-586)||(39916637-39916710)
[»] chr2 (3 HSPs)
chr2 (459-590)||(42788930-42789061)
chr2 (128-195)||(42788744-42788811)
chr2 (556-586)||(27172818-27172848)
[»] chr7 (2 HSPs)
chr7 (531-590)||(45676080-45676139)
chr7 (540-586)||(48892630-48892676)
[»] chr3 (3 HSPs)
chr3 (536-586)||(44674039-44674089)
chr3 (531-586)||(34626700-34626755)
chr3 (143-189)||(34626445-34626491)
[»] chr5 (1 HSPs)
chr5 (536-586)||(1281333-1281383)
[»] chr1 (3 HSPs)
chr1 (536-586)||(16127411-16127461)
chr1 (143-189)||(51044689-51044735)
chr1 (530-583)||(37962871-37962924)
[»] chr4 (1 HSPs)
chr4 (534-586)||(43560551-43560603)


Alignment Details
Target: chr8 (Bit Score: 540; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 19 - 590
Target Start/End: Original strand, 5886748 - 5887319
Alignment:
Q  19 cacattagggtttgcatttaaaggaaagaaacttttcttagaaccggtattgtaggggatgtgaatatcataaaatggggtgaaagatggaacattatcg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5886748 cacattagggtttgcatttaaaggaaagaaacttttcttagaaccggtattgtaggggatgtgaatatcataaaatggggtgaaagatggaacattatca 5886847  T
Q  119 taagaaatgagttttttctttatgcttgaattccaaaagtttttcacctcattatccgttcttcctggtaagtgcttagcaatttgtgcccatctgtgca 218  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5886848 taagaaatgagttttttcttcatgcttgaattccaaaagtttttcacctcattatccgttcttcctggtaagtgcttagcaatttgtgcccatctgtcca 5886947  T
Q  219 aagtccaaacagttcaaatcttgttgagggaaaaataagtagaccgtcccttcccttttaaaattagtgtcattttatcattaaatttaaagggaaaaat 318  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  5886948 aagtccaaacagttcaaatcttgttgagggaaaaatgagtagaccgtcccttccgttttaaaataagtgtcattttatcattaaatttaaagggaaaaat 5887047  T
Q  319 ttaagatccaattgaaaaagagagacacttatttgaaaccggaaagagtataatcaaccttttgaactttgagaataataaattgtaaagattgacatga 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5887048 ttaagatccaattgaaaaagagagacacttatttgaaaccggaaagagtataatcaaccttttgaactttgagaataataaattgtaaagattgacatga 5887147  T
Q  419 aaagcacatcggaggaaaagaaaaagagctattgtaatggatatacctattgcctagaatgctgtgtagttctacaatgagtgctacttcttgatgagag 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5887148 aaagcacatcggaggaaaagaaaaagagctattgtaatggatatacctattgcctagaatgttgtgtagttctacaatgagtgctacttcttgatgagag 5887247  T
Q  519 aaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccacatctctgc 590  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5887248 aaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccgcatctctgc 5887319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 376 - 590
Target Start/End: Original strand, 5842966 - 5843180
Alignment:
Q  376 ccttttgaactttgagaataataaattgtaaagattgacatgaaaagcacatcggaggaaaagaaaaagagctattgtaatggatatacctattgcctag 475  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||  |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  5842966 ccttttgaactttgagaataataaatggtaatgattgacatgaaaataacattggaggaaaagaagaagagctattgtaatggatatacctattgcctag 5843065  T
Q  476 aatgctgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctgcaactc 575  Q
    ||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||     
T  5843066 aatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgttttaaatcaggtcttagataatttatccatcttaatctacaactt 5843165  T
Q  576 tttccacatctctgc 590  Q
    |||||||||||||||    
T  5843166 tttccacatctctgc 5843180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 376 - 590
Target Start/End: Original strand, 5849708 - 5849922
Alignment:
Q  376 ccttttgaactttgagaataataaattgtaaagattgacatgaaaagcacatcggaggaaaagaaaaagagctattgtaatggatatacctattgcctag 475  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||  |||| |||||||||||| |||||| |||||||||||||||||||||||||||    
T  5849708 ccttttgaactttgagaataataaatggtaatgattgacatgaaaataacattggaggaaaagaagaagagcaattgtaatggatatacctattgcctag 5849807  T
Q  476 aatgctgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctgcaactc 575  Q
    ||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  5849808 aatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctacaactt 5849907  T
Q  576 tttccacatctctgc 590  Q
    |||||||||||||||    
T  5849908 tttccacatctctgc 5849922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 436 - 590
Target Start/End: Original strand, 5984557 - 5984711
Alignment:
Q  436 aagaaaaagagctattgtaatggatatacctattgcctagaatgctgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaa 535  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5984557 aagaaagagagctaatgtaatgaatatacctattgcctagaatgttgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaa 5984656  T
Q  536 atcaggtcttagataatttatccatcttaatctgcaactctttccacatctctgc 590  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5984657 atcaggtcttagataatttatccatcttaatctgcaactctttccacatctctgc 5984711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 436 - 590
Target Start/End: Original strand, 5949029 - 5949183
Alignment:
Q  436 aagaaaaagagctattgtaatggatatacctattgcctagaatgctgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaa 535  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5949029 aagaaagagagctaatgtaatgaatatacctattgcctagaatgttgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaa 5949128  T
Q  536 atcaggtcttagataatttatccatcttaatctgcaactctttccacatctctgc 590  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5949129 atcaggtcttagataatttatccatcttaatcttcaactctttccacatctctgc 5949183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 440 - 588
Target Start/End: Original strand, 5960298 - 5960446
Alignment:
Q  440 aaaagagctattgtaatggatatacctattgcctagaatgctgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatca 539  Q
    |||||||||| ||||||| |||||||||||||||| |||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5960298 aaaagagctaatgtaatgaatatacctattgcctaaaatgttgtggagttctacaatgagtgctacttcttgttgagagaaacttccacgtttcaaatca 5960397  T
Q  540 ggtcttagataatttatccatcttaatctgcaactctttccacatctct 588  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5960398 ggtcttagataatttatccatcttaatctacaactctttccacatctct 5960446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 451 - 590
Target Start/End: Original strand, 5921152 - 5921291
Alignment:
Q  451 tgtaatggatatacctattgcctagaatgctgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggtcttagata 550  Q
    ||||||| |||||||||||||||||||||||||| ||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  5921152 tgtaatgaatatacctattgcctagaatgctgtggagttctagaatgagtgcagcttcttgatgagagaaacttccacgtttcaaatcaggtcttagata 5921251  T
Q  551 atttatccatcttaatctgcaactctttccacatctctgc 590  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5921252 atttatccatcttaatctgcaactctttccacatctctgc 5921291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 5849157 - 5849361
Alignment:
Q  19 cacattagggtttgcatttaaaggaaagaaacttttcttagaaccggtattgtaggggatgtgaatatca---taaaatggggtgaaagatggaacatta 115  Q
    ||||||||||||||||||||||||||| ||| ||| |||| ||||   | |||||| || ||||||||||   |||||||||||||| ||||||||| ||    
T  5849157 cacattagggtttgcatttaaaggaaaaaaagtttccttaaaaccatcactgtaggagaggtgaatatcatcataaaatggggtgaaggatggaacaata 5849256  T
Q  116 tcgtaagaaatgagttttttctttatgcttgaattccaaaagtttttcacctcattatccgttcttcctggtaagtgcttagcaatttgtgcccatctgt 215  Q
    || | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||    
T  5849257 tcatcagaaaggagttttttctttatgcttgaattccaaaagtttttcacctcattatccgttcttcctggcaagtgcttggtaatttgtgcccatctgt 5849356  T
Q  216 gcaaa 220  Q
     ||||    
T  5849357 ccaaa 5849361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 5842447 - 5842651
Alignment:
Q  19 cacattagggtttgcatttaaaggaaagaaacttttcttagaaccggtattgtaggggatgtgaatatca---taaaatggggtgaaagatggaacatta 115  Q
    ||||||||||||||||||||||||||| ||| ||| |||| ||||   | |||||| || ||||||||||   |||||||||||||| ||||||||| ||    
T  5842447 cacattagggtttgcatttaaaggaaaaaaagtttccttaaaaccatcactgtaggagaggtgaatatcatcataaaatggggtgaaggatggaacaata 5842546  T
Q  116 tcgtaagaaatgagttttttctttatgcttgaattccaaaagtttttcacctcattatccgttcttcctggtaagtgcttagcaatttgtgcccatctgt 215  Q
    || | ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||||||||    
T  5842547 tcatcagaaaggagttttttctttatgcttgaattccaaaagtttttcacctcattatcggttcttcctggcaagtacttggcaatttgtgcccatctgt 5842646  T
Q  216 gcaaa 220  Q
     ||||    
T  5842647 ccaaa 5842651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 70 - 220
Target Start/End: Original strand, 5983761 - 5983911
Alignment:
Q  70 gtaggggatgtgaatatcataaaatggggtgaaagatggaacattatcgtaagaaatgagttttttctttatgcttgaattccaaaagtttttcacctca 169  Q
    ||||||| ||||||| ||| |||||| |||||||||||||| | |||| | | ||| || ||| ||||||||| ||||||||||||||||||||||||||    
T  5983761 gtagggggtgtgaatttcagaaaatgtggtgaaagatggaataatatcatgacaaaggattttcttctttatggttgaattccaaaagtttttcacctca 5983860  T
Q  170 ttatccgttcttcctggtaagtgcttagcaatttgtgcccatctgtgcaaa 220  Q
    ||||| |||||||| |||||||| || ||||| || |||||||||| ||||    
T  5983861 ttatctgttcttccaggtaagtgttttgcaatctgagcccatctgtccaaa 5983911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 85 - 220
Target Start/End: Original strand, 5948163 - 5948298
Alignment:
Q  85 atcataaaatggggtgaaagatggaacattatcgtaagaaatgagttttttctttatgcttgaattccaaaagtttttcacctcattatccgttcttcct 184  Q
    |||| |||||| |||||||||||||| | || | | ||||| || ||||||||||||| ||||||||||||||||||| | ||||||||| ||||||||     
T  5948163 atcagaaaatgtggtgaaagatggaataataccatgagaaaggatttttttctttatggttgaattccaaaagttttttatctcattatctgttcttcca 5948262  T
Q  185 ggtaagtgcttagcaatttgtgcccatctgtgcaaa 220  Q
    ||||||||||| |||||||| |||||||||| ||||    
T  5948263 ggtaagtgctttgcaatttgagcccatctgtccaaa 5948298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 66 - 220
Target Start/End: Original strand, 5920573 - 5920727
Alignment:
Q  66 tattgtaggggatgtgaatatcataaaatggggtgaaagatggaacattatcgtaagaaatgagttttttctttatgcttgaattccaaaagtttttcac 165  Q
    ||||||||||| ||||||||| | |||||| || |||||||||||   || | | ||||  || ||| ||||| ||| ||||||||||||||||||||||    
T  5920573 tattgtagggggtgtgaatattagaaaatgtggggaaagatggaaagataccatgagaagggattttcttcttcatggttgaattccaaaagtttttcac 5920672  T
Q  166 ctcattatccgttcttcctggtaagtgcttagcaatttgtgcccatctgtgcaaa 220  Q
    ||||||||| |||||||| ||||||||||| ||||| || ||||| |||| ||||    
T  5920673 ctcattatctgttcttccaggtaagtgcttcgcaatctgagcccacctgtccaaa 5920727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 5959189 - 5959393
Alignment:
Q  19 cacattagggtttgcatttaaaggaaagaaacttttcttagaaccggtatt---gtaggggatgtgaatatcataaaatggggtgaaagatggaacatta 115  Q
    |||||| ||||||||||||||||| ||| |  ||| | | ||||| |||||   ||| ||| |||||| |||| |||||| | |||||||||||  | ||    
T  5959189 cacattcgggtttgcatttaaagggaaggagttttccattgaaccagtattatggtatggggtgtgaacatcagaaaatgtgatgaaagatggagtaata 5959288  T
Q  116 tcgtaagaaatgagtttt-ttctttatgcttgaattccaaaagtttttcacctcattatccgttcttcctggtaagtgcttagcaatttgtgcccatctg 214  Q
    |||| |||| ||| |||| ||||||||| | ||||||||||||||||||||||||||||| |||||||| | |||||| || ||||| || |||||||||    
T  5959289 tcgtgagaa-tgaattttcttctttatggtagaattccaaaagtttttcacctcattatctgttcttccagttaagtgttttgcaatctgagcccatctg 5959387  T
Q  215 tgcaaa 220  Q
    | ||||    
T  5959388 tccaaa 5959393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 513 - 586
Target Start/End: Complemental strand, 39916710 - 39916637
Alignment:
Q  513 tgagagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccacatct 586  Q
    |||| |||| ||||||| || | ||||||||| |||||||| |||||||| |||||||| || |||||||||||    
T  39916710 tgagtgaaatttccacgcttaagatcaggtctgagataattgatccatctcaatctgcagctttttccacatct 39916637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 459 - 590
Target Start/End: Original strand, 42788930 - 42789061
Alignment:
Q  459 atatacctattgcctagaatgctgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggtcttagataatttatcc 558  Q
    |||||||| || ||||||||| | || ||||| | ||| || ||  |||||||  |||| |||||||||||||||||||||||||||| |||||||||||    
T  42788930 atatacctgtttcctagaatggtatgaagttcaataataagagcagcttcttgtggagaaaaacttccacgtttcaaatcaggtcttaaataatttatcc 42789029  T
Q  559 atcttaatctgcaactctttccacatctctgc 590  Q
    |||| || |||||||| |||||||||||||||    
T  42789030 atctcaacctgcaactttttccacatctctgc 42789061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 42788744 - 42788811
Alignment:
Q  128 agttttttctttatgcttgaattccaaaagtttttcacctcattatccgttcttcctggtaagtgctt 195  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||    
T  42788744 agtttcttctttatgcttgaattccaaaagttcttcacctcattatctgttcttcctggtaaatgctt 42788811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 556 - 586
Target Start/End: Original strand, 27172818 - 27172848
Alignment:
Q  556 tccatcttaatctgcaactctttccacatct 586  Q
    |||||||||||||||||||||||||||||||    
T  27172818 tccatcttaatctgcaactctttccacatct 27172848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 531 - 590
Target Start/End: Original strand, 45676080 - 45676139
Alignment:
Q  531 ttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccacatctctgc 590  Q
    ||||||||||| |||||||||||||||||||| ||||| |||||||| ||||| ||||||    
T  45676080 ttcaaatcaggccttagataatttatccatctcaatctacaactcttcccacacctctgc 45676139  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 540 - 586
Target Start/End: Original strand, 48892630 - 48892676
Alignment:
Q  540 ggtcttagataatttatccatcttaatctgcaactctttccacatct 586  Q
    ||||||||||| || |||||||||| ||||||||| |||||||||||    
T  48892630 ggtcttagatagttcatccatcttagtctgcaactttttccacatct 48892676  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 536 - 586
Target Start/End: Complemental strand, 44674089 - 44674039
Alignment:
Q  536 atcaggtcttagataatttatccatcttaatctgcaactctttccacatct 586  Q
    |||||||||||| |||||||||||||| |||||||||||||| ||||||||    
T  44674089 atcaggtcttaggtaatttatccatctcaatctgcaactcttgccacatct 44674039  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 531 - 586
Target Start/End: Original strand, 34626700 - 34626755
Alignment:
Q  531 ttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccacatct 586  Q
    |||||||||||||| ||||| || |||||||| ||||| |||||||||||||||||    
T  34626700 ttcaaatcaggtctcagatagttgatccatctcaatctacaactctttccacatct 34626755  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 34626445 - 34626491
Alignment:
Q  143 cttgaattccaaaagtttttcacctcattatccgttcttcctggtaa 189  Q
    |||||||||||||||||||| | ||||||||||||||| ||||||||    
T  34626445 cttgaattccaaaagtttttaatctcattatccgttctacctggtaa 34626491  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 536 - 586
Target Start/End: Complemental strand, 1281383 - 1281333
Alignment:
Q  536 atcaggtcttagataatttatccatcttaatctgcaactctttccacatct 586  Q
    |||||| |||| ||||||| |||||||||| || |||||||||||||||||    
T  1281383 atcaggacttaaataatttgtccatcttaacctacaactctttccacatct 1281333  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 536 - 586
Target Start/End: Original strand, 16127411 - 16127461
Alignment:
Q  536 atcaggtcttagataatttatccatcttaatctgcaactctttccacatct 586  Q
    ||||| ||||| |||||| |||||||| ||||| |||||||||||||||||    
T  16127411 atcagttcttaaataattaatccatctcaatctacaactctttccacatct 16127461  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 51044735 - 51044689
Alignment:
Q  143 cttgaattccaaaagtttttcacctcattatccgttcttcctggtaa 189  Q
    |||||||||||||||||||| | ||||||||| ||||| ||||||||    
T  51044735 cttgaattccaaaagttttttatctcattatctgttctccctggtaa 51044689  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 530 - 583
Target Start/End: Complemental strand, 37962924 - 37962871
Alignment:
Q  530 tttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccaca 583  Q
    |||||||||||| || |  ||||||||||||||||| ||||||||||| |||||    
T  37962924 tttcaaatcaggcctcaagtaatttatccatcttaacctgcaactcttcccaca 37962871  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 534 - 586
Target Start/End: Original strand, 43560551 - 43560603
Alignment:
Q  534 aaatcaggtcttagataatttatccatcttaatctgcaactctttccacatct 586  Q
    |||||||| || | ||| ||||||||||| ||||| |||||||||||||||||    
T  43560551 aaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatct 43560603  T

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