View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12859_low_52 (Length: 239)
Name: NF12859_low_52
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12859_low_52 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 14438890 - 14438670
Alignment:
| Q |
1 |
ctagatggtgctatagttcttctctttcaaagattaatttcattttatagctaaatctttaaattagccacatcatccataccactatttccaccaatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14438890 |
ctagatggtgctatagttcttctctttcaaagattaatttcattttatggctaaatctttaaattagccacatcatccataccactatttccaccaatca |
14438791 |
T |
|
| Q |
101 |
aaattagcataagcatagtgctttcgaccacattccacaaccatgactcgtttctccaccaaataacaaaagagagcgagcacacacaatttttagggta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14438790 |
aaattagcataagcatagtgctttcgaccacattccacaaccatgactcgtttctccaccaaataacaaaagagagcgagcacacacaatttttagggta |
14438691 |
T |
|
| Q |
201 |
tgagattttatatcagacgaa |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
14438690 |
tgagattttatatcagacgaa |
14438670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 185
Target Start/End: Complemental strand, 24429101 - 24429051
Alignment:
| Q |
134 |
tccacaaccatgactcgtttctccaccaaataacaaaagagagcgagcacac |
185 |
Q |
| |
|
|||||||| |||||| |||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
24429101 |
tccacaacgatgacttgtttctccaccaaacaacaaaa-agagcgagcacac |
24429051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University