View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12859_low_53 (Length: 237)
Name: NF12859_low_53
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12859_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 24362320 - 24362099
Alignment:
| Q |
1 |
aaacagaaaatgaaagccatacctctaactttcttacgttgtcgaggggaatctaatggtggcctccttccagtcttctgatttggccattcatccaaaa |
100 |
Q |
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| T |
24362320 |
aaacagaaaatgaaagccatacctctaactttcttacgtggtcgaggggaatctaatggtggcctccttccagtcttttgatttggccattcatccaaaa |
24362221 |
T |
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| Q |
101 |
tttgacatgattcatcatcactatgatcaacattttcatcatagtctatttctactgcattcttgccaagtatgtgtacaaggaacttagaagttccttc |
200 |
Q |
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| T |
24362220 |
tttgacatgattcatcatcactatgatcaacattttcatcatagtctatttctactgcattcttgccaagtatgtgtacaaggaacttagaagttccttc |
24362121 |
T |
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| Q |
201 |
ttcatatttaaacaacaccaaa |
222 |
Q |
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| T |
24362120 |
ttcataattaaacaacaccaaa |
24362099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 24354827 - 24354785
Alignment:
| Q |
138 |
atcatagtctatttctactgcattcttgccaagtatgtgtaca |
180 |
Q |
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| T |
24354827 |
atcatagtctatttctactgcattctggccaagtatgtgtaca |
24354785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 139
Target Start/End: Complemental strand, 24344646 - 24344581
Alignment:
| Q |
74 |
tcttctgatttggccattcatccaaaatttgacatgattcatcatcactatgatcaacattttcat |
139 |
Q |
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| T |
24344646 |
tcttctgatttggccattcatctaaaatctcaactgattcatcatcactatgaccaacattgtcat |
24344581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 173
Target Start/End: Complemental strand, 24369842 - 24369807
Alignment:
| Q |
138 |
atcatagtctatttctactgcattcttgccaagtat |
173 |
Q |
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| T |
24369842 |
atcatagtctatttctaatgcattcttgccaagtat |
24369807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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