View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12859_low_54 (Length: 233)
Name: NF12859_low_54
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12859_low_54 |
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| [»] scaffold0499 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 13100982 - 13101177
Alignment:
| Q |
17 |
gaacaagtccatcggatctgatggggcctttaagcttatttcagaggcatggagtatactctccgataaggatagaagagcagcttatgatgagaagata |
116 |
Q |
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| T |
13100982 |
gaacaagtccatcggatctgatggggcctttaagcttatttcataggcatggagtatactgtctgataaggatagaagagcagcttatgatgagaagata |
13101081 |
T |
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| Q |
117 |
aaagcaaaaccacataaaatgttcaaccatttttggtggttcatcgacaaaagcgacgacaaatggggcaaacaatagtaagaagaaaacaccttca |
213 |
Q |
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| T |
13101082 |
aaagcaaaaccaca-gaaaggttcaaccatttttggtggttcatcgacaaaagcgacgacaaataggacaaacaatagtaagaagaaaacaccttca |
13101177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 20549253 - 20549058
Alignment:
| Q |
17 |
gaacaagtccatcggatctgatggggcctttaagcttatttcagaggcatggagtatactctccgataaggatagaagagcagcttatgatgagaagata |
116 |
Q |
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| T |
20549253 |
gaacaagtccagcggatccgatggggcgtttgggcttatttcagaggcatggagtatactgtccgataaggataaaagagcagcctatgatgcgaagata |
20549154 |
T |
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| Q |
117 |
aaagcaaaaccacataaaatgttcaaccatttttggtggttcatcgacaaaagcgacgacaaatggggcaaacaatagtaagaagaaaacaccttca |
213 |
Q |
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| T |
20549153 |
aaagcaaaaccaca-gaaaggttcaaccatttttggtggttcatcgacaaaagcgacggcaaacggggctaacaacagtaaaaagaaaacgccttca |
20549058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 101 - 213
Target Start/End: Complemental strand, 13141263 - 13141152
Alignment:
| Q |
101 |
ttatgatgagaagataaaagcaaaaccacataaaatgttcaaccatttttggtggttcatcgacaaaagcgacgacaaatggggcaaacaatagtaagaa |
200 |
Q |
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| T |
13141263 |
ttatgatgagaagataaaagcaaaaccacataaag-gttcaacaatttttggtggttcatcgacaaaagcgacggcaaatggggcaaacaatagtaagaa |
13141165 |
T |
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| Q |
201 |
gaaaacaccttca |
213 |
Q |
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| T |
13141164 |
aaaaacgccttca |
13141152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0499 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0499
Description:
Target: scaffold0499; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 95 - 213
Target Start/End: Complemental strand, 4111 - 3994
Alignment:
| Q |
95 |
agcagcttatgatgagaagataaaagcaaaaccacataaaatgttcaaccatttttggtggttcatcgacaaaagcgacgacaaatggggcaaacaatag |
194 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
4111 |
agcaacttatgatgagaagataaaagcaaaaccacagaaag-gttcaaccatttttggtggttcatcgacaaaagcgacggcaaatgggacaaacaatag |
4013 |
T |
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| Q |
195 |
taagaagaaaacaccttca |
213 |
Q |
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| T |
4012 |
taagaagaaaacaccttca |
3994 |
T |
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