View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12859_low_57 (Length: 221)
Name: NF12859_low_57
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12859_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 51168544 - 51168353
Alignment:
| Q |
15 |
caaaggatagcctaaaaagaaaaacaataaaagcatctgtcaactagctgaaactaaaatagtaactcctacaaatcaaatatcaaaaccgaacatatcc |
114 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
51168544 |
caaaagatagcctaaaaagaaaaacaataaaagcaactgtcaactagctgaaactaaaatagtaactcctacaaatcaaatatcaaagccgaacagatcc |
51168445 |
T |
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| Q |
115 |
cttcctagtaaacacaatctgaaaagttgcaaaatcagacccgcacagccgcaccagaggtacaaaagctgggaaattcccaccagaaaaat |
206 |
Q |
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| T |
51168444 |
cctcctagtaaacacaatctgaaaagttgcaaaatcagacccgcacagccgcaccagaggtacaaaagctgggaaattcccaccagaaaaat |
51168353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 64 - 206
Target Start/End: Original strand, 752694 - 752835
Alignment:
| Q |
64 |
gaaactaaaatagtaactcctacaaatcaaatatcaaaaccgaacatatcccttcctagtaaacacaatctgaaaagttgcaaaatcagacccgcacagc |
163 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
752694 |
gaaactaaaatagtaactcctacaaatcaaatatcaaa-ccgaacagatcccctcctagtaaacacaatctgaaaagttgcaaaatcagacccgcacagc |
752792 |
T |
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| Q |
164 |
cgcaccagaggtacaaaagctgggaaattcccaccagaaaaat |
206 |
Q |
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| T |
752793 |
cgcaccagaggtacaaaagttggggaattcccaccagaaaaat |
752835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 64 - 206
Target Start/End: Complemental strand, 850815 - 850674
Alignment:
| Q |
64 |
gaaactaaaatagtaactcctacaaatcaaatatcaaaaccgaacatatcccttcctagtaaacacaatctgaaaagttgcaaaatcagacccgcacagc |
163 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
850815 |
gaaactaaaatagtaactcctacaaatcaaatatcaaa-ccgaacagatcccctcctagtaaacacaatctgaaaagttgcaaaatcagacccgcacagc |
850717 |
T |
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| Q |
164 |
cgcaccagaggtacaaaagctgggaaattcccaccagaaaaat |
206 |
Q |
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||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
850716 |
cgcaccagaggtacaaaagttggggaattcccaccagaaaaat |
850674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 236862 - 236918
Alignment:
| Q |
13 |
agcaaaggatagcctaaaaagaaaaacaataaaagcatctgtcaactagctgaaact |
69 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
236862 |
agcaaaagatagcctaaaaagaaaaacaataaaagcaactgccaactagctgaaact |
236918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 801514 - 801458
Alignment:
| Q |
13 |
agcaaaggatagcctaaaaagaaaaacaataaaagcatctgtcaactagctgaaact |
69 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
801514 |
agcaaaagatagcctaaaaagaaaaacaataaaagcaactgccaactagctgaaact |
801458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 806720 - 806776
Alignment:
| Q |
13 |
agcaaaggatagcctaaaaagaaaaacaataaaagcatctgtcaactagctgaaact |
69 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
806720 |
agcaaaagatagcctaaaaagaaaaacaataaaagcaactgccaactagctgaaact |
806776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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