View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12859_low_6 (Length: 597)
Name: NF12859_low_6
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12859_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 167 - 588
Target Start/End: Original strand, 36476750 - 36477171
Alignment:
| Q |
167 |
caaagattatctccaaacattcactttgccaccttagtcgctctctaaccaccacgggggatgcaaagatgttacgtcacacataacttggactatggtt |
266 |
Q |
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| T |
36476750 |
caaagattatctccaaacattcactttgctatcttagtcgctctctaaccaccacgggggatgcaaagatgttacgtcacacataacttggactatggtt |
36476849 |
T |
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| Q |
267 |
gaactgagcctcaaggaaccccttgtttgggtaatatctatctttgaaattttttgataccataccatagcataagaggcggatcatgaccctaagcagt |
366 |
Q |
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| T |
36476850 |
gaactgagcctcaaggaaccccttgtttgggtaatatctatctttgaaattttttgatgccataccatagcataagaggcggatcaggaccctaagcagt |
36476949 |
T |
|
| Q |
367 |
gtgtgaacttattaactcaattaataataaaataattaaattagtaagtgtatatttgcaatttacaccttacagtttattttacaaacttttacttata |
466 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36476950 |
gtgtgaacttattaactcaattaataataaaataattatattagtaagtgtatatttgcaatttacaccttacagtttattttacaaacttttacttata |
36477049 |
T |
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| Q |
467 |
tcttgttaacaagtctactaaaaaatgagcgagtgtaagttaacaagttttaatattctaacttgcatagtcaaattaaaaccatgaaaatggtggaaac |
566 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36477050 |
tcttgttaacaaatctactaaaaaatgagcgagtgtaagttaacaagttttaatattctaacttgcatagtcaaattaaaaccatgaaaatggtggaaac |
36477149 |
T |
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| Q |
567 |
ccatatatacctctgtgctcct |
588 |
Q |
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| T |
36477150 |
ccatatatacctctgtgttcct |
36477171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 36476530 - 36476706
Alignment:
| Q |
17 |
atttttaatatctctgtttgtcccttgggttgaaattaaatattttgcagtatatatgtacgccaacatcatataatgtctgctacatgtaattcttcat |
116 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36476530 |
attttcaatatctctgtttgtcccttgggttgaaattaaatattttgcagtatatctgtacgccaacatcatataatgtctgctacatgtaattcttcat |
36476629 |
T |
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| Q |
117 |
acccttgagatggattggaagtcacccaagcactttcatcgttaagtaaccaaagattatctccaaacattcactttg |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
36476630 |
acccttgagatggattggaagtcacccaagcactttcatcgttaagtaaccaaag-ttgtctccaaacattcactttg |
36476706 |
T |
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