View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12859_low_7 (Length: 597)
Name: NF12859_low_7
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12859_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 501; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 9 - 571
Target Start/End: Complemental strand, 32918262 - 32917694
Alignment:
| Q |
9 |
agcacagaaatttccataaaaagagcaaaagtcagcttgggtcttacctttctgcaagaaaaataacaagtgcaattgtcataagataattgatcaa-tg |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32918262 |
agcacagaaatttccataaaaagagcaaaagtcagcttgggtcttacttttctgcaagaaaaataacaagtgcaattgtcataagataattgatcaaatg |
32918163 |
T |
|
| Q |
108 |
tgatatcatctatgctcataccaaattcagttgtttatttgaaacaaataaattaattgatatgaatcaagatttatacgtttcaaagttcaaactcaaa |
207 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||| |
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| T |
32918162 |
tgatatcatctatgatcataccaaattcagttgtttatttgaaacaaataaattaattgatatgactcaagatttctgagtttcaaagttcaaactcaaa |
32918063 |
T |
|
| Q |
208 |
aaaccaacaaaacttctaatttgaacgtgtttgaa-----gagaattaaatgtgcatgtacctctcaagaaagtacgcaaaagggagcatcacaacaccg |
302 |
Q |
| |
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||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32918062 |
aaaccaacaaaacttctaacttgaacgtgtttgaattgaagagaattaaatgtgcatgtacctctcaagaaagtacgcaaaagggagcatcacaacaccg |
32917963 |
T |
|
| Q |
303 |
gcgaaaatatgtcgatatgtaacataaacataaggactcattccatgattgaaggaagcttcactgataaaatataagaaggtatagccaacttgggcta |
402 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32917962 |
gcgaaaatatgtcgatatgtaacataaacataaggactcattccatgattgaaggaagcttcactgataaaatataagaaggtatagccaacttgggcta |
32917863 |
T |
|
| Q |
403 |
agaccatgatcaagtgtggcttgaacttcttgaatccaagcagaggagataatatcttttgctccataagttcagagatgtaaatgtgatgatgtttctt |
502 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32917862 |
agaccatgatcaagtgtggcttgaacttcttgaatccaagcagaggagaaaatattttttgctccataagttcagagatgtgaatgtgatgatgtttctt |
32917763 |
T |
|
| Q |
503 |
ttctaaacttatttagaagcataactcatgcacattatatatatagcttaggtgatgggtttatttaat |
571 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32917762 |
ttctaaacttatttagaagcataactcatgcacattatatatatagcttaggtgatgggtttatttaat |
32917694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 250 - 474
Target Start/End: Complemental strand, 32883458 - 32883234
Alignment:
| Q |
250 |
aaatgtgcatgtacctctcaagaaagtacgcaaaagggagcatcacaacaccggcgaaaatatgtcgatatgtaacataaacataaggactcattccatg |
349 |
Q |
| |
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|||||| ||||||||||||||||||||| |||||||| | ||||||| | || |||| || ||| ||||| ||||||||||||||||||||||||||||| |
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| T |
32883458 |
aaatgtacatgtacctctcaagaaagtatgcaaaaggaaacatcacagccccagcgagaacatgccgataggtaacataaacataaggactcattccatg |
32883359 |
T |
|
| Q |
350 |
attgaaggaagcttcactgataaaatataagaaggtatagccaacttgggctaagaccatgatcaagtgtggcttgaacttcttgaatccaagcagagga |
449 |
Q |
| |
|
||||||||||| |||| |||||||||||| ||||||||||||||||||||||| ||||||| || |||||||||||||| ||| || || | |||||| |
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| T |
32883358 |
attgaaggaagattcagagataaaatataaaaaggtatagccaacttgggctaaaaccatgaccaggtgtggcttgaactctttgtatacatgtagagga |
32883259 |
T |
|
| Q |
450 |
gataatatcttttgctccataagtt |
474 |
Q |
| |
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|| |||| |||| ||||||||||| |
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| T |
32883258 |
gaaaatacttttttctccataagtt |
32883234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 250 - 545
Target Start/End: Complemental strand, 32934044 - 32933754
Alignment:
| Q |
250 |
aaatgtgcatgtacctctcaagaaagtacgcaaaagggagcatcacaacaccggcgaaaatatgtcgatatgtaacataaacataaggactcattccatg |
349 |
Q |
| |
|
|||||| |||||||||||| |||||||| |||||||| | |||| ||| || |||| || || || || ||||||||||||||||||||||||||||| |
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| T |
32934044 |
aaatgtacatgtacctctccagaaagtatgcaaaaggaaacatcgcaatcccagcgacaacgtgccggtacgtaacataaacataaggactcattccatg |
32933945 |
T |
|
| Q |
350 |
attgaaggaagcttcactgataaaatataagaaggtatagccaacttgggctaagaccatgatcaagtgtggcttgaacttcttgaatccaagcagagga |
449 |
Q |
| |
|
|||||| ||||||| | |||||||| ||| || |||||||||||||||| ||||||||||| || |||||||||||||| || || |||||||| || |
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|
| T |
32933944 |
attgaacgaagcttgagtgataaaaaatattaaagtatagccaacttgggttaagaccatgagcaggtgtggcttgaactctctgtatacaagcagaaga |
32933845 |
T |
|
| Q |
450 |
gataatatcttttgctccataagttcagagatgtaaatgtgatgatgtttcttttctaaacttatttagaagcataactcatgcacattatatata |
545 |
Q |
| |
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|| ||||| |||||||||||||||| | | || ||||| ||||||||||||||| ||||| |||| || ||| ||||||||||||||||| |
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| T |
32933844 |
gagaatattttttgctccataagtttataagtg---atgtggtgatgtttcttttctgcactta--tagaggctcaacgcatgcacattatatata |
32933754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 250 - 429
Target Start/End: Complemental strand, 32950021 - 32949842
Alignment:
| Q |
250 |
aaatgtgcatgtacctctcaagaaagtacgcaaaagggagcatcacaacaccggcgaaaatatgtcgatatgtaacataaacataaggactcattccatg |
349 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||| | ||| ||||| ||||||| ||| || || || ||||||||||||||||||||||||||||| |
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|
| T |
32950021 |
aaatgtacatgtacctctccagaaagtacgcaaaaggaaacattacaaccccggcgacaatgtgccggtacgtaacataaacataaggactcattccatg |
32949922 |
T |
|
| Q |
350 |
attgaaggaagcttcactgataaaatataagaaggtatagccaacttgggctaagaccatgatcaagtgtggcttgaact |
429 |
Q |
| |
|
|||||||||||||||| |||||||||||| || || ||||||||||||| || || ||||| || ||||||||| |||| |
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|
| T |
32949921 |
attgaaggaagcttcagtgataaaatatattaaagtgtagccaacttgggttaggagcatgagcaggtgtggcttaaact |
32949842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 260 - 474
Target Start/End: Original strand, 19505133 - 19505347
Alignment:
| Q |
260 |
gtacctctcaagaaagtacgcaaaagggagcatcacaacaccggcgaaaatatgtcgatatgtaacataaacataaggactcattccatgattgaaggaa |
359 |
Q |
| |
|
|||| |||| |||||||| ||||||||||||||||||| || || | || ||| ||||| |||||||| ||||||||||||||||||||||| || ||| |
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|
| T |
19505133 |
gtacttctctagaaagtatgcaaaagggagcatcacaaacccagctacaacatggcgataggtaacatacacataaggactcattccatgattaaaagaa |
19505232 |
T |
|
| Q |
360 |
gcttcactgataaaatataagaaggtatagccaacttgggctaagaccatgatcaagtgtggcttgaacttcttgaatccaagcagaggagataatatct |
459 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| | ||| | || ||||||| | ||||||||||||||| ||| || |||| ||| | | ||||| | |
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|
| T |
19505233 |
gcttcagtgataaaatataacaaggtatagcccaactggccaaataccatgactaggtgtggcttgaactttttgtatacaagtagacaacaaaatattt |
19505332 |
T |
|
| Q |
460 |
tttgctccataagtt |
474 |
Q |
| |
|
||||||||||||||| |
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|
| T |
19505333 |
tttgctccataagtt |
19505347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 250 - 429
Target Start/End: Complemental strand, 32893407 - 32893228
Alignment:
| Q |
250 |
aaatgtgcatgtacctctcaagaaagtacgcaaaagggagcatcacaacaccggcgaaaatatgtcgatatgtaacataaacataaggactcattccatg |
349 |
Q |
| |
|
|||| |||||||||||||| |||||||| |||||||||| ||||||||| || || | | || |||||||||||||||||||||||||||| |||||| |
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|
| T |
32893407 |
aaatatgcatgtacctctctagaaagtatgcaaaagggaacatcacaaccccagccacgacattccgatatgtaacataaacataaggactcagtccatg |
32893308 |
T |
|
| Q |
350 |
attgaaggaagcttcactgataaaatataagaaggtatagccaacttgggctaagaccatgatcaagtgtggcttgaact |
429 |
Q |
| |
|
|||||| |||| |||| ||||||||||| |||||||| || ||||||| |||||||||| || ||||||||| |||| |
|
|
| T |
32893307 |
attgaatgaagtttcagtgataaaatatccaaaggtataacccacttgggtcaagaccatgagcaggtgtggcttcaact |
32893228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 19504996 - 19505064
Alignment:
| Q |
9 |
agcacagaaatttccataaaaagagcaaaagtcagcttgggtcttacctttctgcaagaaaaataacaa |
77 |
Q |
| |
|
|||||| ||| ||||||||| |||| ||| |||||||| |||||||| ||||||||||| ||| ||||| |
|
|
| T |
19504996 |
agcacaaaaaattccataaatagagaaaatgtcagctttggtcttacatttctgcaagagaaacaacaa |
19505064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 32934323 - 32934247
Alignment:
| Q |
9 |
agcacagaaatttccataaaaagagcaaaagtcagcttgggtcttacctttctgcaagaaaaataacaagtgcaatt |
85 |
Q |
| |
|
|||||| |||| |||| ||||||||||| |||||||| |||||| | |||||||||||||| ||||||| ||||| |
|
|
| T |
32934323 |
agcacaaaaatctccaccaaaagagcaaatgtcagctttggtcttgcacttctgcaagaaaaacaacaagtacaatt |
32934247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 32894779 - 32894708
Alignment:
| Q |
16 |
aaatttccataaaaagagcaaaagtcagcttgggtcttacctttctgcaagaaaaataacaagtgcaattgt |
87 |
Q |
| |
|
||||||||||||||||| || |||||||| |||||||| |||||||||||||| ||| ||| ||||||| |
|
|
| T |
32894779 |
aaatttccataaaaagatacaaggtcagctttggtcttacacttctgcaagaaaaacaaccagtacaattgt |
32894708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 571
Target Start/End: Complemental strand, 32893166 - 32893104
Alignment:
| Q |
509 |
acttatttagaagcataactcatgcacattatatatatagcttaggtgatgggtttatttaat |
571 |
Q |
| |
|
|||||||||||||| | | ||||||||||||||||||| ||||| ||||||| ||| ||||| |
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|
| T |
32893166 |
acttatttagaagctcaccacatgcacattatatatataacttagttgatgggattaattaat |
32893104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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