View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12859_low_9 (Length: 557)
Name: NF12859_low_9
Description: NF12859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12859_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 21 - 547
Target Start/End: Original strand, 54347667 - 54348196
Alignment:
| Q |
21 |
aattgatcagtctctttgtgcagtacgtacgtacttccattgctatattaattcaatctgattgtgttata---ctacttaagaattatggctgaggaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
54347667 |
aattgatcagtctctttgtgcagtacgtac----ttccattgctatattaattcaatctgattgtgttatataactacttaagaattatggctgaggaga |
54347762 |
T |
|
| Q |
118 |
aaacaccagttcagctgaagtctcttgaggattttgattctcaaaagaaacccgaatcgaacaagtttgctttcgcctgtgctatattggcttccatgac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54347763 |
aaacaccagttcagctgaagtctcttgaggattttgattctcaaaagaaacccgaatcgaacaagtttgctttcgcctgtgctatattggcttccatgac |
54347862 |
T |
|
| Q |
218 |
ttccattttacttggttatggtaagtagtgacta----tataatgtatatatttacctccatacatattgatacatagctagatagtaaacatgcatgga |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54347863 |
ttccattttacttggttatggtaagtagtgactacatatataatgtatatatttacctccatacatattgatacatagctagatagtaaacatgcatgga |
54347962 |
T |
|
| Q |
314 |
aatgtatggacattaactaactatatgtatgttattttatgttatgcagatattggggtgatgagtggagcagtgatatacataaaaagagacctcaaac |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54347963 |
aatgtatggacattaactaactatatgtatgttattttatgttatgcagatattggggtgatgagtggagcagtgatatacataaaaagagacctcaaac |
54348062 |
T |
|
| Q |
414 |
tatctaatgtccaaattgaaatcctagtaggcatcatcaaccttttctccttaataggttcctgcctcgctggccgaacctctgactggattggtcgccg |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
54348063 |
tatctaatgtccaaattgaaatcctagtaggcatcatcaaccttttctccttaataggttcctgcctcgccggccgaacctctgactggattggtcgccg |
54348162 |
T |
|
| Q |
514 |
ttacaccatcgtccttgccggctccatcttcttc |
547 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
|
|
| T |
54348163 |
ttacaccatcgtccttgctggctccatcttcttc |
54348196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 26152414 - 26152478
Alignment:
| Q |
177 |
aacaagtttgctttcgcctgtgctatattggcttccatgacttccattttacttggttatggtaa |
241 |
Q |
| |
|
||||||| |||||| || |||||||| ||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
26152414 |
aacaagtatgcttttgcttgtgctatgttggcttccatgacttccattttgcttggatatggtaa |
26152478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 26152277 - 26152338
Alignment:
| Q |
180 |
aagtttgctttcgcctgtgctatattggcttccatgacttccattttacttggttatggtaa |
241 |
Q |
| |
|
|||| |||||| || |||||||| ||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
26152277 |
aagtatgcttttgcttgtgctatgttggcttccatgacttccattttgcttggatatggtaa |
26152338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 244
Target Start/End: Original strand, 27318348 - 27318460
Alignment:
| Q |
132 |
ctgaagtctcttgaggattttgattctcaaaagaaacccgaatcgaacaagtttgctttcgcctgtgctatattggcttccatgacttccattttacttg |
231 |
Q |
| |
|
||||| |||||||| ||||||| | ||||||| || | | || |||||||||||||| || |||||||| |||||||| |||||||| || |||||| |
|
|
| T |
27318348 |
ctgaaatctcttgaagattttggtcctcaaaaaaagctcaaaaggaacaagtttgcttgtgcttgtgctatcttggcttctatgacttctatcctacttg |
27318447 |
T |
|
| Q |
232 |
gttatggtaagta |
244 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
27318448 |
gatatggtaagta |
27318460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 361 - 417
Target Start/End: Original strand, 26152712 - 26152768
Alignment:
| Q |
361 |
agatattggggtgatgagtggagcagtgatatacataaaaagagacctcaaactatc |
417 |
Q |
| |
|
||||||||| || ||||||||||||| || ||||||||||||||||| ||| |||| |
|
|
| T |
26152712 |
agatattggtgttatgagtggagcagcaatctacataaaaagagaccttaaagtatc |
26152768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 360 - 408
Target Start/End: Original strand, 27318767 - 27318815
Alignment:
| Q |
360 |
cagatattggggtgatgagtggagcagtgatatacataaaaagagacct |
408 |
Q |
| |
|
|||||||||| |||||||||||||||| || || |||||||||||||| |
|
|
| T |
27318767 |
cagatattggtgtgatgagtggagcagccatctatataaaaagagacct |
27318815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University