View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1286-Insertion-1 (Length: 516)
Name: NF1286-Insertion-1
Description: NF1286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1286-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 7035158 - 7035401
Alignment:
| Q |
8 |
catactttgtcagaatctgcagcacaaagactcgctcaacattgtgagaaactccatcatttgtttcgataacaatatcgccatcagctgaactttcaga |
107 |
Q |
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| T |
7035158 |
catactttgtcagaatctgcagcgcaaagactcgttcaacattgtgagcaactccatcatttgtttcgata---------ccatcagctgaactttcaga |
7035248 |
T |
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| Q |
108 |
gttttcggtcgccgagataatttcctgagtttttggagcaaattagaacaaaattatcaaaaatctaaacagcaccaaattgtgaacgagaaaataaaag |
207 |
Q |
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| T |
7035249 |
gttttcggttgccgagataatttcctgagtttttggagcaaattagaacaaaattatcaaaaatctaaacagcaccaaattgtgaacgagaaaataaaag |
7035348 |
T |
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| Q |
208 |
ataaacatcctaaaatctgcagatatatatacaagtcagagctaactagaatt |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7035349 |
ataaacatcctaaaatctgcagatatatatacaagtcagagctaactagaatt |
7035401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 7896391 - 7896635
Alignment:
| Q |
8 |
catactttgtcagaatctgcagcacaaagactcgctcaacattgtgagaaactccatcatttgtttcgataacaatatcgccatcagctgaactttcaga |
107 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
7896391 |
catactttgtcagaatctgcagcacaaagactcgttcaacattgtgagcaactccatcatttgtttcgataacaatattgccatcagctgaattttcaga |
7896490 |
T |
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| Q |
108 |
gttttcggtcgccgagataatttcctgagtttttggagcaaattagaacaaaattatcaaaaatctaaacagcaccaaattgtgaacgagaaaataaaag |
207 |
Q |
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| T |
7896491 |
gttttcggtcaccgagatcatttcctgagttttcag--------agaacaaaattatcaaaaatctaaacagcaccagattgtaaacgagaaaataaaag |
7896582 |
T |
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| Q |
208 |
ataaacatcctaaaatctgcagatatatatacaagtcagagctaactagaatt |
260 |
Q |
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| T |
7896583 |
ataaacatcctaaaatttgcagatatatatacaagtcggagctaactataatt |
7896635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 304 - 511
Target Start/End: Original strand, 7035446 - 7035642
Alignment:
| Q |
304 |
gccaacatagtgaccatccattcataaatatcactgtagtataacatctttgacaaactcaccaaaacacattaactaagttcaactcactatagggaaa |
403 |
Q |
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| T |
7035446 |
gccaacatagtgaccatccattcataaatatcactgtagtataacatctttgacaaactcaccaaaacacattaaccaagttcaactcactatagggaaa |
7035545 |
T |
|
| Q |
404 |
agaataataatacattgatttcgtttgaagcatgccagtaaaaaacatgtgttaaaaacattgattataagtagcttgacatatcaaagaattttcccct |
503 |
Q |
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| T |
7035546 |
agaataataatacattgatttcgtttgaagcatgccagtaaaaaacatgtgttaaaaacatt-----------gcttgacatatcaaagaattttcccct |
7035634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 306 - 467
Target Start/End: Original strand, 7896681 - 7896857
Alignment:
| Q |
306 |
caacatagtgaccatccattcataaatatcactgtagtataacatctttgacaaactcaccaaaacacattaactaagttcaactcactatagggaaaag |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||| |
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| T |
7896681 |
caacatagtgaccatccattcataaatatcactgtagtataacatctttgacaaactcacaaagacacattaactaagttcaactcaatatagggaaaag |
7896780 |
T |
|
| Q |
406 |
aataataatacattgatttcgt--------ttgaagcatgc-------cagtaaaaaacatgtgttaaaaacattga |
467 |
Q |
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| T |
7896781 |
aataataatacagtgatttcgtgattttgtttgaagcatgcatgatgccagtaaaaaacatgtgttaaaaacattga |
7896857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 7894787 - 7894719
Alignment:
| Q |
8 |
catactttgtcagaatctgcagcacaaagactcgctcaacattgtgagaaactccatcatttgtttcga |
76 |
Q |
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||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
7894787 |
catactttgtcagaatctgcagcgcaaagactcgttcaacattgtgagcaactccatcatttgtttcga |
7894719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 390 - 509
Target Start/End: Original strand, 7039080 - 7039197
Alignment:
| Q |
390 |
tcactatagggaaaagaataataatacattgatttcgtttgaagcatgccagtaaaaaacatgtgttaaaaacattgattataagtagcttgacatatca |
489 |
Q |
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||||| ||||||||||||||||| || | ||| || ||||||||| | |||||||| ||||||| ||||||||||| ||| ||| ||||||||| ||| |
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| T |
7039080 |
tcactttagggaaaagaataatactagaaagatgtcatttgaagcagggcagtaaaa--catgtgtgaaaaacattgaatatgagtggcttgacatttca |
7039177 |
T |
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| Q |
490 |
aagaattttcccctcaacaa |
509 |
Q |
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|||||||||||||||||||| |
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| T |
7039178 |
aagaattttcccctcaacaa |
7039197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 467
Target Start/End: Original strand, 7880819 - 7880935
Alignment:
| Q |
349 |
atctttgacaaactcaccaaaacacattaactaagttcaactcactatagggaaaagaataataatacattgatttcgtttgaagcatgccagtaaaaaa |
448 |
Q |
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||||||||||| ||| |||| ||||||| || |||| |||||||| ||||||||||||||||| || | ||| || ||||||||| | |||| |||| |
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| T |
7880819 |
atctttgacaacctcgccaagacacatttacaaagtctaactcactttagggaaaagaataatactagaaagatgtcatttgaagcagggcagt--aaaa |
7880916 |
T |
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| Q |
449 |
catgtgttaaaaacattga |
467 |
Q |
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||||||| ||||||||||| |
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| T |
7880917 |
catgtgtgaaaaacattga |
7880935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 479 - 511
Target Start/End: Original strand, 7896854 - 7896886
Alignment:
| Q |
479 |
ttgacatatcaaagaattttcccctcaacaaag |
511 |
Q |
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| T |
7896854 |
ttgacatatcaaagaattttcccctcaacaaag |
7896886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 309 - 412
Target Start/End: Original strand, 29379045 - 29379148
Alignment:
| Q |
309 |
catagtgaccatccattcataaatatcactgtagtataacatctttgacaaactcaccaaaacacattaactaagttcaactcactatagggaaaagaat |
408 |
Q |
| |
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|||||| |||||||| |||||||| | ||||||||| ||||| |||||| |||||||| ||||||| | |||| |||||||| |||| |||||||| |
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| T |
29379045 |
catagtaaccatccactcataaatttttctgtagtatcacatccttgacagcctcaccaagacacatttataaagtataactcactttaggtaaaagaat |
29379144 |
T |
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| Q |
409 |
aata |
412 |
Q |
| |
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|||| |
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| T |
29379145 |
aata |
29379148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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