View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1286-Insertion-10 (Length: 820)
Name: NF1286-Insertion-10
Description: NF1286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1286-Insertion-10 |
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Alignment Details
Target: chr2 (Bit Score: 603; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 129 - 817
Target Start/End: Complemental strand, 8883661 - 8882974
Alignment:
| Q |
129 |
ggtcaaatgttaatctaatgaggagagaatcaagctcaagattagtctattaagtatgacactcccatataacaaaaaatattaatttgatttttagaac |
228 |
Q |
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|||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8883661 |
ggtcaaatattaatctaatgaggaga--atcaaactcaagattagtctattaagtatgacagtcccatataacaaaaaatattaatttgatttttagaac |
8883564 |
T |
|
| Q |
229 |
ttttaaatatcagttaagttagaggtatggacattacttggctaacatttgtaattttttgaagattagaatagtagttcttcactctaaaagcttatcc |
328 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8883563 |
ttttaaatatcagttaagttagagttatggacattacttggctaacatttgtaattttttgaagattagaatagtagttcttcactctaaaagcttatcc |
8883464 |
T |
|
| Q |
329 |
gtgtagaattcaatttagacaaacaagtgaatttcatcatatcatgatttaagttatcggtctcatcttttatcttaatcagatcaagttcgaggaaggt |
428 |
Q |
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| T |
8883463 |
gtgtagaattcaatttagacaaacaagtgaatttcatcatatcatgatttaagttattggtctcatcttttatcttaatcagatcaagttcgaggaaggt |
8883364 |
T |
|
| Q |
429 |
gtcataggcactccacaactcacagactcattagagataccagaaaatgtggaagttttggggcaaaagattgatctatcacctttcaaaggcatattta |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8883363 |
gtcataggcactccacaactcacagactcattagagataccagaaaatgtggaagttttggggcaaaagattgatctatcacctttcaaaggcatattta |
8883264 |
T |
|
| Q |
529 |
cttctgtccaaaacactgcctcctccgtcgtgcaaacaatttccaatcagcctccgttgaagatcccaatttccaacgacaacgctcaatcatggttgct |
628 |
Q |
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| T |
8883263 |
cttctgtccaaaacactgcctcatctgtcgtgcaaacaatttccaatcagcctccgttgaagatcccaatttccaacgacaacgctcaatcatggttgct |
8883164 |
T |
|
| Q |
629 |
tactacataccttgatgaagaactacgtatctcaaggggcgatggtggcagtgtgtttgttcttatcaaggaaggaagtcctcttttgacaaactaagga |
728 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
8883163 |
tactacataccttgatgaagaactacgtatctcaaggggcgatggtggcagtgtgtttgttcttatcaaggaaggaagttctcttttgacaaactaaaga |
8883064 |
T |
|
| Q |
729 |
aattatatgtaataatatccggggttc-attgtgcttatattcgttaataagcaacactggattagatacttattgagcaaataacttgt |
817 |
Q |
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|||||||||||||||||||| | |||| ||||| | ||||||| | |||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
8883063 |
aattatatgtaataatatccagtgttcaattgttcgtatattcataaataagcaacactggattagatacatattgtgcaaataacttgt |
8882974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 302 - 733
Target Start/End: Complemental strand, 8879691 - 8879260
Alignment:
| Q |
302 |
gtagttcttcactctaaaagcttatccgtgtagaattcaatttagacaaacaagtgaatttcatcatatcatgatttaagttatcggtctcatcttttat |
401 |
Q |
| |
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|||||| ||||||||||| ||||| | |||||||||||||| ||| |||||||||| ||| |||||||||||||| ||| | | ||||||||||||||| |
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| T |
8879691 |
gtagttattcactctaaatgcttaatcttgtagaattcaattaagataaacaagtgattttaatcatatcatgattcaagctgttggtctcatcttttat |
8879592 |
T |
|
| Q |
402 |
cttaatcagatcaagttcgaggaaggtgtcataggcactccacaactcacagactcattagagataccagaaaatgtggaagttttggggcaaaagattg |
501 |
Q |
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||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||| |||||| |
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| T |
8879591 |
gttattcagatcaagtttgaggaaggtgtcataggcactccacaactcacagactcattagagataccagaaactgtggaatttttagggcaagagattg |
8879492 |
T |
|
| Q |
502 |
atctatcacctttcaaaggcatatttacttctgtccaaaacactgcctcctccgtcgtgcaaacaatttccaatcagcctccgttgaagatcccaatttc |
601 |
Q |
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| T |
8879491 |
atctatcatctttcaaagacatatttacttctatccaaaacaccgcctcatcggttgtgcaaacaatttccgatcagcctccgttgaagatcccaatctc |
8879392 |
T |
|
| Q |
602 |
caacgacaacgctcaatcatggttgcttactacataccttgatgaagaactacgtatctcaaggggcgatggtggcagtgtgtttgttcttatcaaggaa |
701 |
Q |
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| T |
8879391 |
caacagctatgctcaatcatggttgcttactacataccttgatgaagaactacgcgtcgcaaggggtgatggtggcagtgtgtttgttcttattaaggaa |
8879292 |
T |
|
| Q |
702 |
ggaagtcctcttttgacaaactaaggaaatta |
733 |
Q |
| |
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| T |
8879291 |
ggaagttctcttttgacaaactaaagaaatta |
8879260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 8883751 - 8883688
Alignment:
| Q |
39 |
tccaattatattagtgttttaaattggtccgcgagaaaaaagattgacatttatttagtcttcg |
102 |
Q |
| |
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||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8883751 |
tccaattgtattagcgttttaaattggtccgggagaaaaaagattgacatttatttagtcttcg |
8883688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 45073036 - 45072996
Alignment:
| Q |
420 |
gaggaaggtgtcataggcactccacaactcacagactcatt |
460 |
Q |
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||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
45073036 |
gaggaaggtatcataggcactccacaattcacagactcatt |
45072996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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