View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1286-Insertion-17 (Length: 173)

Name: NF1286-Insertion-17
Description: NF1286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1286-Insertion-17
NF1286-Insertion-17
[»] chr7 (2 HSPs)
chr7 (6-173)||(24760494-24760661)
chr7 (60-140)||(11504477-11504557)
[»] chr3 (3 HSPs)
chr3 (6-173)||(52127929-52128096)
chr3 (93-148)||(53690040-53690095)
chr3 (93-148)||(52310802-52310857)
[»] chr4 (1 HSPs)
chr4 (48-173)||(37618066-37618191)
[»] chr6 (4 HSPs)
chr6 (48-156)||(22081798-22081906)
chr6 (43-148)||(27445112-27445217)
chr6 (60-148)||(20909795-20909882)
chr6 (60-148)||(20924243-20924330)
[»] scaffold0003 (2 HSPs)
scaffold0003 (43-148)||(42141-42246)
scaffold0003 (43-148)||(35471-35575)
[»] chr1 (1 HSPs)
chr1 (60-148)||(41326689-41326777)
[»] chr8 (2 HSPs)
chr8 (60-148)||(43227181-43227267)
chr8 (60-146)||(42312909-42312995)


Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 6 - 173
Target Start/End: Complemental strand, 24760661 - 24760494
Alignment:
Q  6 caacaccaacattcaaaattatggtagtggttttgattttgtttctaaaacctctgcttcatcctatggtagtggttttggttttgtttaacatagaaca 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24760661 caacaccaacattcaaaattatggtagtggttttgattttgtttctaaaacccctgcttcatcctatggtagtggttttggttttgtttaacatagaaca 24760562  T
Q  106 ccaaaccctaaaaggaatcaaaatgcaagtgaattcaatgttcccaattcagcttcaagctcattttg 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24760561 ccaaaccctaaaaggaatcaaaatgcaagtgaattcaatgttcccaattcatcttcaagctcattttg 24760494  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 11504557 - 11504477
Alignment:
Q  60 tgcttcatcctatggtagtggttttggttttgtttaacatagaacaccaaaccctaaaaggaatcaaaatgcaagtgaatt 140  Q
    ||||||||| |||||||||||||||   ||| |||||||||||||||||||| |||  |  | |||||| |||||||||||    
T  11504557 tgcttcatcatatggtagtggttttaaatttttttaacatagaacaccaaactctaggaaaattcaaaaagcaagtgaatt 11504477  T

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Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 6 - 173
Target Start/End: Complemental strand, 52128096 - 52127929
Alignment:
Q  6 caacaccaacattcaaaattatggtagtggttttgattttgtttctaaaacctctgcttcatcctatggtagtggttttggttttgtttaacatagaaca 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  52128096 caacaccaacattcaaaattatggtagtggttttgattttgtttctaaaacccctgcttcatcctatggtagtggttttggttttgtttaacatagaaca 52127997  T
Q  106 ccaaaccctaaaaggaatcaaaatgcaagtgaattcaatgttcccaattcagcttcaagctcattttg 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  52127996 ccaaaccctaaaaggaatcaaaatgcaagtgaattcaatgttcccaattcatcttcaagctcattttg 52127929  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 93 - 148
Target Start/End: Complemental strand, 53690095 - 53690040
Alignment:
Q  93 ttaacatagaacaccaaaccctaaaaggaatcaaaatgcaagtgaattcaatgttc 148  Q
    ||||||||||||||||||| |||| | || |||||| | |||||||||||||||||    
T  53690095 ttaacatagaacaccaaactctaagaagattcaaaaagaaagtgaattcaatgttc 53690040  T

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Target: chr3; HSP #3
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 93 - 148
Target Start/End: Original strand, 52310802 - 52310857
Alignment:
Q  93 ttaacatagaacaccaaaccctaaaaggaatcaaaatgcaagtgaattcaatgttc 148  Q
    ||||||||||||||||||| |||| | || |||||| | ||||||||| |||||||    
T  52310802 ttaacatagaacaccaaactctaagaagattcaaaaagaaagtgaatttaatgttc 52310857  T

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Target: chr4 (Bit Score: 78; Significance: 1e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 48 - 173
Target Start/End: Original strand, 37618066 - 37618191
Alignment:
Q  48 ttctaaaacctctgcttcatcctatggtagtggttttggttttgtttaacatagaacaccaaaccctaaaaggaatcaaaatgcaagtgaattcaatgtt 147  Q
    |||||||||  || ||||||||||||  |||||||||| |||| || |||||||||||||||||||||||||||||||| |||||||  |||||||||||    
T  37618066 ttctaaaactccttcttcatcctatgtaagtggttttgatttttttaaacatagaacaccaaaccctaaaaggaatcaatatgcaagataattcaatgtt 37618165  T
Q  148 cccaattcagcttcaagctcattttg 173  Q
    ||||||||| ||||||||||||||||    
T  37618166 cccaattcatcttcaagctcattttg 37618191  T

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Target: chr6 (Bit Score: 65; Significance: 7e-29; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 7e-29
Query Start/End: Original strand, 48 - 156
Target Start/End: Complemental strand, 22081906 - 22081798
Alignment:
Q  48 ttctaaaacctctgcttcatcctatggtagtggttttggttttgtttaacatagaacaccaaaccctaaaaggaatcaaaatgcaagtgaattcaatgtt 147  Q
    |||||||||  || ||||||||||||  |||||||||| |||| || |||||||||||||||||||||||||||||||| |||||||  |||||||||||    
T  22081906 ttctaaaactcctacttcatcctatgtaagtggttttgatttttttaaacatagaacaccaaaccctaaaaggaatcaatatgcaagataattcaatgtt 22081807  T
Q  148 cccaattca 156  Q
    |||||||||    
T  22081806 cccaattca 22081798  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 43 - 148
Target Start/End: Complemental strand, 27445217 - 27445112
Alignment:
Q  43 tttgtttctaaaacctctgcttcatcctatggtagtggttttggttttgtttaacatagaacaccaaaccctaaaaggaatcaaaatgcaagtgaattca 142  Q
    |||| |||||||||   |||||||||||||||||||||||||  |||| |||||||||||||||||||| |||| | || |||||| ||||||||| |||    
T  27445217 tttgattctaaaactattgcttcatcctatggtagtggttttaattttttttaacatagaacaccaaactctaagaagattcaaaaagcaagtgaactca 27445118  T
Q  143 atgttc 148  Q
    ||||||    
T  27445117 atgttc 27445112  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 20909795 - 20909882
Alignment:
Q  60 tgcttcatcctatggtagtggttttggttttgtttaacatagaacaccaaaccctaaaaggaatcaaaatgcaagtgaattcaatgttc 148  Q
    ||||||||| ||||| ||||||||   |||| | |||| |||||||||||||  ||| | || |||||| |||||||||||||||||||    
T  20909795 tgcttcatcatatggcagtggtttaattttt-tctaacttagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttc 20909882  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 20924243 - 20924330
Alignment:
Q  60 tgcttcatcctatggtagtggttttggttttgtttaacatagaacaccaaaccctaaaaggaatcaaaatgcaagtgaattcaatgttc 148  Q
    ||||||||| ||||| ||||||||   |||| | |||| |||||||||||||  ||| | || |||||| |||||||||||||||||||    
T  20924243 tgcttcatcatatggcagtggtttaattttt-tctaacttagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttc 20924330  T

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Target: scaffold0003 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 43 - 148
Target Start/End: Original strand, 42141 - 42246
Alignment:
Q  43 tttgtttctaaaacctctgcttcatcctatggtagtggttttggttttgtttaacatagaacaccaaaccctaaaaggaatcaaaatgcaagtgaattca 142  Q
    |||| |||||||||   |||||||||||||||||||||||||  |||| |||||||||||||||||||| |||| | || |||||| ||||||||| |||    
T  42141 tttgattctaaaactattgcttcatcctatggtagtggttttaattttttttaacatagaacaccaaactctaagaagattcaaaaagcaagtgaactca 42240  T
Q  143 atgttc 148  Q
    ||||||    
T  42241 atgttc 42246  T

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Target: scaffold0003; HSP #2
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 43 - 148
Target Start/End: Original strand, 35471 - 35575
Alignment:
Q  43 tttgtttctaaaacctctgcttcatcctatggtagtggttttggttttgtttaacatagaacaccaaaccctaaaaggaatcaaaatgcaagtgaattca 142  Q
    |||| |||||||||   |||||||||||||||||||||||||  |||| |||||||||||||||||||| |  | | || |||||| ||||||||| |||    
T  35471 tttgattctaaaactattgcttcatcctatggtagtggttttaatttt-tttaacatagaacaccaaactcatagaagattcaaaaagcaagtgaactca 35569  T
Q  143 atgttc 148  Q
    ||||||    
T  35570 atgttc 35575  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 41326689 - 41326777
Alignment:
Q  60 tgcttcatcctatggtagtggttttggttttgtttaacatagaacaccaaaccctaaaaggaatcaaaatgcaagtgaattcaatgttc 148  Q
    ||||||||| ||||| ||||||||   |||| | ||||||||||||||||||  ||| | || |||||| |||||||||||||||||||    
T  41326689 tgcttcatcatatggcagtggtttaatttttttctaacatagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttc 41326777  T

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Target: chr8 (Bit Score: 33; Significance: 0.0000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 60 - 148
Target Start/End: Complemental strand, 43227267 - 43227181
Alignment:
Q  60 tgcttcatcctatggtagtggttttggttttgtttaacatagaacaccaaaccctaaaaggaatcaaaatgcaagtgaattcaatgttc 148  Q
    ||||||||||||||||||| |||||  |||| |||||||||||||||||||| | ||   || ||||||  ||||||||||||||||||    
T  43227267 tgcttcatcctatggtagtagttttaatttt-tttaacatagaacaccaaactc-aatgagattcaaaaatcaagtgaattcaatgttc 43227181  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 42312909 - 42312995
Alignment:
Q  60 tgcttcatcctatggtagtggttttggttttgtttaacatagaacaccaaaccctaaaaggaatcaaaatgcaagtgaattcaatgt 146  Q
    ||||||||| ||||| ||||||||   |||| | ||||||||||||||||||  ||| | ||  ||||| |||||||||||||||||    
T  42312909 tgcttcatcgtatggcagtggtttaatttttttctaacatagaacaccaaactataagaagatacaaaaagcaagtgaattcaatgt 42312995  T

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