View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1286-Insertion-2 (Length: 545)

Name: NF1286-Insertion-2
Description: NF1286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1286-Insertion-2
NF1286-Insertion-2
[»] chr6 (14 HSPs)
chr6 (54-538)||(7564329-7564813)
chr6 (463-537)||(176324-176398)
chr6 (464-530)||(1442096-1442162)
chr6 (229-298)||(176599-176668)
chr6 (475-535)||(1470922-1470982)
chr6 (473-523)||(370782-370832)
chr6 (475-535)||(1459540-1459600)
chr6 (474-530)||(1453838-1453894)
chr6 (474-530)||(1465530-1465586)
chr6 (263-302)||(370569-370608)
chr6 (478-528)||(9819831-9819881)
chr6 (261-302)||(1459314-1459355)
chr6 (478-527)||(9703888-9703937)
chr6 (471-523)||(24417481-24417533)
[»] chr7 (2 HSPs)
chr7 (474-537)||(3927049-3927112)
chr7 (468-528)||(1078152-1078212)
[»] scaffold0044 (1 HSPs)
scaffold0044 (466-527)||(89143-89204)
[»] chr2 (7 HSPs)
chr2 (468-517)||(6538844-6538893)
chr2 (474-523)||(7160752-7160801)
chr2 (474-523)||(7168688-7168737)
chr2 (466-523)||(7156182-7156239)
chr2 (466-517)||(7174363-7174414)
chr2 (466-530)||(33026654-33026718)
chr2 (475-523)||(36577370-36577418)
[»] chr4 (2 HSPs)
chr4 (475-535)||(55419774-55419834)
chr4 (473-523)||(22672124-22672174)
[»] chr3 (20 HSPs)
chr3 (473-528)||(2442038-2442093)
chr3 (476-528)||(2456248-2456300)
chr3 (475-523)||(3754604-3754652)
chr3 (468-523)||(9608336-9608391)
chr3 (473-523)||(4142131-4142181)
chr3 (473-523)||(4157941-4157991)
chr3 (466-523)||(2631361-2631418)
chr3 (476-528)||(771499-771551)
chr3 (466-530)||(7324421-7324485)
chr3 (478-529)||(13498222-13498273)
chr3 (473-523)||(803215-803265)
chr3 (473-523)||(1007465-1007515)
chr3 (473-523)||(1022493-1022543)
chr3 (476-530)||(2644362-2644416)
chr3 (473-523)||(2696729-2696779)
chr3 (475-523)||(2459279-2459327)
chr3 (480-528)||(2502147-2502195)
chr3 (476-528)||(2659152-2659204)
chr3 (466-530)||(9561975-9562039)
chr3 (468-528)||(12133096-12133156)
[»] chr5 (4 HSPs)
chr5 (475-523)||(11081817-11081865)
chr5 (473-523)||(23766859-23766909)
chr5 (473-523)||(23816707-23816757)
chr5 (478-530)||(20292992-20293044)
[»] chr1 (1 HSPs)
chr1 (466-527)||(51381445-51381506)


Alignment Details
Target: chr6 (Bit Score: 425; Significance: 0; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 54 - 538
Target Start/End: Original strand, 7564329 - 7564813
Alignment:
Q  54 atcaatggaatctgtgaatgcaacaattgggtgattgctaatgctcatagagaatgaaacaatataaattcatgacagtaaataaatattacagagaaca 153  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7564329 atcaatggaatctgtgaatggaacaattgggtgattgctaatgctcatagagaatgaaacaatataaattcatgacagtaaataaatattacagagaaca 7564428  T
Q  154 gtaccaatatgtagaaaaatagcaaaaaactcaaagcaacattaaataaataacacataagacgaaaacacatatggagaatctctgagacccaacatag 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7564429 gtaccaatatgtagaaaaatagcaaaaaactcaaagcaacattaaataaataacacataagacgaaaacacatatggagaatctctgagatccaacatag 7564528  T
Q  254 caaagcgtgtaggtcaaggtgatatgagactctcaacatagacattagacgagaaatcggtaaaagcgacattttgaatccccgaaatctttacggtacc 353  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7564529 caaagcgtgtaggtcaaggtgatacgagactctcaacatagacattagaggagaaatcggtaaaagcgagattttgaatccccgaaatctttacggtacc 7564628  T
Q  354 attcttataattgtaaacatataacttaccacaaaagtcaagcaacacttggtcatcctcctcataaataaaaagcagacgtgcatagaaataatcaatg 453  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| ||| |||| ||    
T  7564629 attcttataattgtaaacatataacttaccacaaaagtcaagcaacacttggtcatcctcctcatagataaaaagcacaggtgcatagcaattatcactg 7564728  T
Q  454 aattctgtgaatggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaacaaagttg 538  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||    
T  7564729 aattctttgaatggaacactgaacaatttagtccaagaatccttgtttccataatccttcataacccaaatattcaaaaaagttg 7564813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 463 - 537
Target Start/End: Complemental strand, 176398 - 176324
Alignment:
Q  463 aatggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaacaaagtt 537  Q
    ||||||| | |||||||||||||||||||||| |||||||||||||| ||||||  |||||||||||| ||||||    
T  176398 aatggaagagtgaacaatttagtccaagaatctttatttccataatcattcatacgccaaatatccaaaaaagtt 176324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 464 - 530
Target Start/End: Original strand, 1442096 - 1442162
Alignment:
Q  464 atggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaa 530  Q
    |||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||  |||||||    
T  1442096 atggaacagtgaacaatttagtccaagaatctttaattccataatccttcataacccatgtatccaa 1442162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 229 - 298
Target Start/End: Complemental strand, 176668 - 176599
Alignment:
Q  229 ggagaatctctgagacccaacatagcaaagcgtgtaggtcaaggtgatatgagactctcaacatagacat 298  Q
    ||||||||| ||||| ||| || ||||||||  |||||||||||||||||||||||||||||||||||||    
T  176668 ggagaatctttgagagccagcagagcaaagcaagtaggtcaaggtgatatgagactctcaacatagacat 176599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 475 - 535
Target Start/End: Original strand, 1470922 - 1470982
Alignment:
Q  475 aacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaacaaag 535  Q
    |||||||||| ||||||||| |||||||||||||| |||||||||||||||||||| ||||    
T  1470922 aacaatttagaccaagaatctttatttccataatctttcataacccaaatatccaaaaaag 1470982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 473 - 523
Target Start/End: Original strand, 370782 - 370832
Alignment:
Q  473 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 523  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  370782 tgaacaatttagtccaagaatctttatttccataattcttcataacccaaa 370832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 475 - 535
Target Start/End: Original strand, 1459540 - 1459600
Alignment:
Q  475 aacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaacaaag 535  Q
    ||||||||||||||||| || ||||||||| |||| |||||||||||||||||||| ||||    
T  1459540 aacaatttagtccaagattctttatttccaaaatctttcataacccaaatatccaaaaaag 1459600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 474 - 530
Target Start/End: Original strand, 1453838 - 1453894
Alignment:
Q  474 gaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaa 530  Q
    |||||||||| ||||||| || ||||||||||||| |||||||||||| ||||||||    
T  1453838 gaacaatttattccaagagtctttatttccataatacttcataacccagatatccaa 1453894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 474 - 530
Target Start/End: Original strand, 1465530 - 1465586
Alignment:
Q  474 gaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaa 530  Q
    |||||||||| ||||||| || ||||||||||||| |||||||||||| ||||||||    
T  1465530 gaacaatttattccaagagtctttatttccataatacttcataacccagatatccaa 1465586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 263 - 302
Target Start/End: Original strand, 370569 - 370608
Alignment:
Q  263 taggtcaaggtgatatgagactctcaacatagacattaga 302  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  370569 taggtcaaggtgatatgagactctcaacgtagacattaga 370608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 478 - 528
Target Start/End: Original strand, 9819831 - 9819881
Alignment:
Q  478 aatttagtccaagaatccttatttccataatccttcataacccaaatatcc 528  Q
    |||||||||||||| ||  |||||||||| |||||||||| ||||||||||    
T  9819831 aatttagtccaagagtctctatttccatattccttcataagccaaatatcc 9819881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 302
Target Start/End: Original strand, 1459314 - 1459355
Alignment:
Q  261 tgtaggtcaaggtgatatgagactctcaacatagacattaga 302  Q
    |||||||||||||||||||||||||||  | |||||||||||    
T  1459314 tgtaggtcaaggtgatatgagactctctgcgtagacattaga 1459355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 527
Target Start/End: Original strand, 9703888 - 9703937
Alignment:
Q  478 aatttagtccaagaatccttatttccataatccttcataacccaaatatc 527  Q
    |||||||||||| ||||  |||||||||| |||||||||| |||||||||    
T  9703888 aatttagtccaaaaatctctatttccatattccttcataagccaaatatc 9703937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 471 - 523
Target Start/End: Original strand, 24417481 - 24417533
Alignment:
Q  471 actgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 523  Q
    |||| |||||||||||||||| || ||||||||||| || ||||||| |||||    
T  24417481 actgtacaatttagtccaagattctttatttccatattctttcataatccaaa 24417533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 474 - 537
Target Start/End: Complemental strand, 3927112 - 3927049
Alignment:
Q  474 gaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaacaaagtt 537  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||    
T  3927112 gaacaatttagtccaagaatttttatttccataatccttcataacccaaatacccaacaaagtt 3927049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 468 - 528
Target Start/End: Original strand, 1078152 - 1078212
Alignment:
Q  468 aacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatcc 528  Q
    |||| |||||||||||||||| || ||  |||||||||| |||||||||||||||| ||||    
T  1078152 aacattgaacaatttagtccacgactctctatttccatactccttcataacccaaacatcc 1078212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 466 - 527
Target Start/End: Complemental strand, 89204 - 89143
Alignment:
Q  466 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatc 527  Q
    |||||| || |||||||||||||||| || ||||||||||| ||||||||||||||||||||    
T  89204 ggaacattgtacaatttagtccaagactctttatttccatattccttcataacccaaatatc 89143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 468 - 517
Target Start/End: Complemental strand, 6538893 - 6538844
Alignment:
Q  468 aacactgaacaatttagtccaagaatccttatttccataatccttcataa 517  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  6538893 aacactgaacaatttagtccaagaatctttatttccatactccttcataa 6538844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 474 - 523
Target Start/End: Original strand, 7160752 - 7160801
Alignment:
Q  474 gaacaatttagtccaagaatccttatttccataatccttcataacccaaa 523  Q
    ||||||||||||||||||||| ||||||||||| |||||||||| |||||    
T  7160752 gaacaatttagtccaagaatcattatttccatactccttcataagccaaa 7160801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 474 - 523
Target Start/End: Original strand, 7168688 - 7168737
Alignment:
Q  474 gaacaatttagtccaagaatccttatttccataatccttcataacccaaa 523  Q
    ||||||||||||||||||||| ||||||||||| |||||||||| |||||    
T  7168688 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaa 7168737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 466 - 523
Target Start/End: Original strand, 7156182 - 7156239
Alignment:
Q  466 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 523  Q
    ||||||| ||||||||||| ||||||||| | ||||||||| |||||||||| |||||    
T  7156182 ggaacacggaacaatttagcccaagaatcttcatttccatactccttcataagccaaa 7156239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 517
Target Start/End: Original strand, 7174363 - 7174414
Alignment:
Q  466 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataa 517  Q
    ||||||| ||||||| ||||||||||||| | ||||||||| ||||||||||    
T  7174363 ggaacacggaacaatctagtccaagaatcttgatttccatattccttcataa 7174414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 530
Target Start/End: Complemental strand, 33026718 - 33026654
Alignment:
Q  466 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaa 530  Q
    ||||||| | ||||| |||||||||| |  ||||||||||| | |||||||||||||| ||||||    
T  33026718 ggaacacggtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaa 33026654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 523
Target Start/End: Complemental strand, 36577418 - 36577370
Alignment:
Q  475 aacaatttagtccaagaatccttatttccataatccttcataacccaaa 523  Q
    ||||||||| ||||||| || ||||||||||| |||||||||| |||||    
T  36577418 aacaatttaatccaagactctttatttccatattccttcataatccaaa 36577370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 475 - 535
Target Start/End: Complemental strand, 55419834 - 55419774
Alignment:
Q  475 aacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaacaaag 535  Q
    |||||||||||||||||||| |||||||||||| ||||||||| ||| |||||||| ||||    
T  55419834 aacaatttagtccaagaatctttatttccataaaccttcataagccagatatccaaaaaag 55419774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 473 - 523
Target Start/End: Original strand, 22672124 - 22672174
Alignment:
Q  473 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 523  Q
    ||||||||||||||||||| |||||||||||||| |||||||| |||||||    
T  22672124 tgaacaatttagtccaagattccttatttccatattccttcattacccaaa 22672174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 473 - 528
Target Start/End: Complemental strand, 2442093 - 2442038
Alignment:
Q  473 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatcc 528  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| ||||| ||||    
T  2442093 tgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 2442038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 528
Target Start/End: Complemental strand, 2456300 - 2456248
Alignment:
Q  476 acaatttagtccaagaatccttatttccataatccttcataacccaaatatcc 528  Q
    |||||||||||||||| || ||||||||||| |||||||||||||||| ||||    
T  2456300 acaatttagtccaagagtctttatttccatattccttcataacccaaacatcc 2456248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 475 - 523
Target Start/End: Complemental strand, 3754652 - 3754604
Alignment:
Q  475 aacaatttagtccaagaatccttatttccataatccttcataacccaaa 523  Q
    ||||||||||||||||| || ||||||||||| ||||||||||||||||    
T  3754652 aacaatttagtccaagactctttatttccatattccttcataacccaaa 3754604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 523
Target Start/End: Original strand, 9608336 - 9608391
Alignment:
Q  468 aacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 523  Q
    ||||||| | |||||||||||||||||  |||||||||| ||||||||||||||||    
T  9608336 aacactgtataatttagtccaagaatctatatttccatattccttcataacccaaa 9608391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 473 - 523
Target Start/End: Original strand, 4142131 - 4142181
Alignment:
Q  473 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 523  Q
    ||||||||||||||||||| || ||||||||||| |||||||||| |||||    
T  4142131 tgaacaatttagtccaagactctttatttccatattccttcataagccaaa 4142181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 473 - 523
Target Start/End: Original strand, 4157941 - 4157991
Alignment:
Q  473 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 523  Q
    ||||||||||||||||||| || ||||||||||| |||||||||| |||||    
T  4157941 tgaacaatttagtccaagactctttatttccatattccttcataagccaaa 4157991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 466 - 523
Target Start/End: Complemental strand, 2631418 - 2631361
Alignment:
Q  466 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 523  Q
    ||||||||| |||||||||||||||| || | ||||||||| |||||||||| |||||    
T  2631418 ggaacactgcacaatttagtccaagactcttgatttccatattccttcataatccaaa 2631361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 476 - 528
Target Start/End: Original strand, 771499 - 771551
Alignment:
Q  476 acaatttagtccaagaatccttatttccataatccttcataacccaaatatcc 528  Q
    |||||||||||||||| ||  |||||||||| |||||||||||||||| ||||    
T  771499 acaatttagtccaagagtctgtatttccatattccttcataacccaaacatcc 771551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 466 - 530
Target Start/End: Original strand, 7324421 - 7324485
Alignment:
Q  466 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaa 530  Q
    ||||||||  |||||||||||||||| || |||||||| || |||||||||| ||||| ||||||    
T  7324421 ggaacactatacaatttagtccaagactctttatttccgtagtccttcataatccaaacatccaa 7324485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 529
Target Start/End: Complemental strand, 13498273 - 13498222
Alignment:
Q  478 aatttagtccaagaatccttatttccataatccttcataacccaaatatcca 529  Q
    |||||||||||||| || ||||||||||| |||||||||| ||||| |||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaacatcca 13498222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 523
Target Start/End: Original strand, 803215 - 803265
Alignment:
Q  473 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 523  Q
    ||||||| ||||||||||| || ||||||||||| || |||||||||||||    
T  803215 tgaacaacttagtccaagactctttatttccatattctttcataacccaaa 803265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 523
Target Start/End: Complemental strand, 1007515 - 1007465
Alignment:
Q  473 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 523  Q
    |||||||||||||||| || || ||||||||||| |||||||| |||||||    
T  1007515 tgaacaatttagtccaggactcgttatttccatattccttcattacccaaa 1007465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 523
Target Start/End: Complemental strand, 1022543 - 1022493
Alignment:
Q  473 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 523  Q
    |||||||||||||||| || || ||||||||||| |||||||| |||||||    
T  1022543 tgaacaatttagtccatgactcgttatttccatattccttcattacccaaa 1022493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 476 - 530
Target Start/End: Original strand, 2644362 - 2644416
Alignment:
Q  476 acaatttagtccaagaatccttatttccataatccttcataacccaaatatccaa 530  Q
    |||||||||||||||| || | ||||||||| |||||||||| ||||| ||||||    
T  2644362 acaatttagtccaagactcttgatttccatactccttcataatccaaacatccaa 2644416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 523
Target Start/End: Original strand, 2696729 - 2696779
Alignment:
Q  473 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 523  Q
    ||||||||||| ||||||| || ||||||||||| |||||||||| |||||    
T  2696729 tgaacaatttaatccaagactctttatttccatattccttcataatccaaa 2696779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 523
Target Start/End: Complemental strand, 2459327 - 2459279
Alignment:
Q  475 aacaatttagtccaagaatccttatttccataatccttcataacccaaa 523  Q
    |||||||| |||||||| || ||||||||||| |||||||||| |||||    
T  2459327 aacaattttgtccaagactctttatttccatattccttcataatccaaa 2459279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 528
Target Start/End: Complemental strand, 2502195 - 2502147
Alignment:
Q  480 tttagtccaagaatccttatttccataatccttcataacccaaatatcc 528  Q
    |||||||||| | |||||||||||||| |||||||||| ||||| ||||    
T  2502195 tttagtccaaaactccttatttccatactccttcataatccaaacatcc 2502147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 476 - 528
Target Start/End: Original strand, 2659152 - 2659204
Alignment:
Q  476 acaatttagtccaagaatccttatttccataatccttcataacccaaatatcc 528  Q
    |||||||||||||||| || | ||||||||| |||||||||| ||||| ||||    
T  2659152 acaatttagtccaagactcttgatttccatactccttcataatccaaacatcc 2659204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 530
Target Start/End: Original strand, 9561975 - 9562039
Alignment:
Q  466 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaa 530  Q
    ||||||||| | |||||||||||||| || | ||||||||| || ||||||| ||||| ||||||    
T  9561975 ggaacactgtataatttagtccaagactcttgatttccatactcattcataatccaaacatccaa 9562039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 468 - 528
Target Start/End: Complemental strand, 12133156 - 12133096
Alignment:
Q  468 aacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatcc 528  Q
    |||| |||||||||||||||| || ||  |||||||||| ||| |||||||||||| ||||    
T  12133156 aacattgaacaatttagtccacgactctctatttccatactccctcataacccaaacatcc 12133096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 475 - 523
Target Start/End: Complemental strand, 11081865 - 11081817
Alignment:
Q  475 aacaatttagtccaagaatccttatttccataatccttcataacccaaa 523  Q
    ||||||||||||||||| || ||||||||||| ||||||||||||||||    
T  11081865 aacaatttagtccaagactctttatttccatactccttcataacccaaa 11081817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 523
Target Start/End: Original strand, 23766859 - 23766909
Alignment:
Q  473 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 523  Q
    ||||||||||||||||||| || ||||||||||| || ||||||| |||||    
T  23766859 tgaacaatttagtccaagactctttatttccatattctttcataatccaaa 23766909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 523
Target Start/End: Original strand, 23816707 - 23816757
Alignment:
Q  473 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 523  Q
    ||||||||||||||||||| || ||||||||||| || ||||||| |||||    
T  23816707 tgaacaatttagtccaagactctttatttccatattctttcataatccaaa 23816757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 530
Target Start/End: Complemental strand, 20293044 - 20292992
Alignment:
Q  478 aatttagtccaagaatccttatttccataatccttcataacccaaatatccaa 530  Q
    |||||||||||||| || ||| ||||||| |||||||||| ||||| ||||||    
T  20293044 aatttagtccaagactctttaattccatattccttcataatccaaacatccaa 20292992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 466 - 527
Target Start/End: Original strand, 51381445 - 51381506
Alignment:
Q  466 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatc 527  Q
    |||| ||||||||||||||||||||| || | ||||||||| || ||||||| |||||||||    
T  51381445 ggaatactgaacaatttagtccaagactcttcatttccatattctttcataatccaaatatc 51381506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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